Array 1 150-777 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJNUE010000031.1 Lactobacillus delbrueckii subsp. lactis strain CIRM BIA 265 CIRM_BIA265-i1-1_scf31, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================ ================== 150 36 100.0 38 .................................... TGATCAAATTTATAAACAGTTGTATCTCTTCACGTTAA 224 36 97.2 37 ..................T................. TGAACGGGGGATGTATCCATGGGAAATTTTTCACGAT 297 36 100.0 36 .................................... ATGGATCGTGATTACATCCATGTTTGAGGAGTATTG 369 36 100.0 48 .................................... CCCAGGGAAGAATCGTAAAATCCATAGGGTCGGTAGCAACATAGTTGA 453 36 100.0 37 .................................... ATCATGATCAGCTTTAACAGTCACGTGGAGGCCTTAA 526 36 100.0 39 .................................... GCGGAAGTCGAATTTCTGTTTATTGATGACTTTGGGACT 601 36 100.0 33 .................................... TCGAGATTTTTGACAAGGAGGAAGAACATGTCA 670 36 100.0 36 .................................... GGAAGAAGAAAATGAATAAATCAGAAGAGATCCAAA 742 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================================ ================== 9 36 99.7 38 GTTCTCGTCTCCTTCTAGCGGAGATAAGTTGTTAGC # Left flank : GAAGATCTTAAACTACAAGACTCCAGAAGAGTACTTTGACACCGAACTTGACCGCATTTACCGGCGTAGATAGTCAAAATCTGCCAGATGTTATGGTAAGTGTTCAATTTATTCTTGCAATTGGCGAATAGAATTAAATCACAAGGAGGG # Right flank : CAGATCCTGTTTAAAACGTTATTACGTCGCGCATCCCCAAGCATTTGTCTCGTCTAAATCCTGGTCAACGCCCATCAAACAGCATCCCTCTTTGTCCTATTTTTGGACAAAAAAGGCACCTCTGCTAATTGAGAACATATAAATTATACCACACCAGATGCTACACCACGATCACCTTAGGTACTGAGACTGCCTTCATTGGTGCGTCTGGACCCAAAATGTTAATCTGCTTGTTATTCACCTCATCTGGCAACAGATATAGAGTTATCATTCCATCATCTGGAACTTCTTTTTTCAAAATCCCAATCAAATGGTCTTTCGTAGTATCTGACTCCACCTCCCGTTCATACAGGCTGTACTGCTTCATGTCAAATCCCAACTCAACCAGCCGTTTCCTGTATTCCGCGGCTTTCTTTCGCTCTTCTTTGGTATTTCTAGGCAGATCAAAGCTTAAAAGAAGTACCATCATTTTCCTCCTTGAATGAAAGTCGGCAACTTCA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCGTCTCCTTCTAGCGGAGATAAGTTGTTAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 1 18451-19745 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJNUE010000034.1 Lactobacillus delbrueckii subsp. lactis strain CIRM BIA 265 CIRM_BIA265-i1-1_scf34, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 18451 35 75.0 38 .C.T.....C...G.G.-...G...T.T........ GCATAGTGCGGATTGTAAGTAGCGACAAGCTTTGTTGC C [18464] 18525 36 80.6 35 A..T.T.C......T...................AT GTGCAAAGCAGAATGAGTCTCCGTAAGGAATAAAA C,G [18554,18557] 18598 36 94.4 41 ....C..C............................ GCAAGTGGTTACTGGGTATCTGATGACGGGAAACTGTTTGA 18675 36 100.0 41 .................................... ACATCAAGCAATTTAATAACAACTCAGTACAGATTATTGGT 18752 36 100.0 41 .................................... AGAATGAAAAGTGACTAACGAAATTATGAACTTTGAATTTG 18829 36 100.0 39 .................................... CTTGATCCGGGAGTATGAAGACTTGGTAGAGGAGGAGCT 18904 36 100.0 36 .................................... TGAACTCAAGATATATCAAAGGTTTCTGCCGTATGT 18976 36 100.0 39 .................................... GAAAAAGAGGTAAAAAGATGAAAATTTTTAAAATTTATT 19051 36 100.0 39 .................................... AAAATTGTTAGATTATATTTTGTAAAAGAAGACAACAAC 19126 36 100.0 39 .................................... GAGGAAGGCTACTGGCAATACCTGATGGACCAGATCGAT 19201 36 100.0 42 .................................... CGAAGAAGCGGTAGAGAATGTGTTGGATTACTGGCATGTCGA 19279 36 100.0 33 .................................... ATGGAAGTCGATAACCCTACCGATGACGCCCAA 19348 36 100.0 34 .................................... CATTCTAGAGGGCAAAAAATGGAAAACCTTGTAA 19418 36 100.0 40 .................................... GTACGAAGTATGAAGAAGCAATCAAGCACAATCTCATGTC 19494 36 100.0 33 .................................... AAAGAGATTTTTGGAGCTTTTTCAAAATTCAGA 19563 36 100.0 35 .................................... GGATACTGGCAGTATCTCGTGGACCAGATCGACTA 19634 36 100.0 40 .................................... ATTAAGCGAATTTGGATTGGTGAAAATGATCGATTGTTTA 19710 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 18 36 97.2 38 GTTCTCGTCTCCTTCTAGCGGAGATAAGTTGTTAGC # Left flank : ATGGTTGGCAAAAATCCGCACGCTGAAGCGTTTGATCGCCCGGCAGACTTGAACTAGATAAAGTAGCGATAATTGGATTAAACGGTTGGCCAGGATCTTATGGTTCAGCAAGTCATACAAGCCTTGGACCAGCTGCCCTTGAAAGTATGGTCCAGCGACCATGCCGATATTGTAGATCAAGCCTGAAATAGTAACGACCACAAGAATTGGCGCTTCTTACCAGAAGTAGCTGCTCATTTTCTTGGGGTCGCGGGTATTTTCTGCTTCATCTCGCTGCCTCCTCTGACTGCAATTTTGCCCGCTTCTCTGCATCCGCTATCAGCATTTCCACCTTCATCATAGCACCGATTCTTCTTCAGTCTAGTCCATTTTGGACGGAATGAAGGAGGTTTTTTATACGAAAAAACGGCCAGCAACTGGCCGTTTGGCTTATGTCTCCTTTTAACGGAGATTGTGCATTGAAAATAGATTGATTAATAATATAGCTCTTTTCTTTAAAT # Right flank : CTTGATCGATGTACAATAGAATTAAATCCGCCGATTGTAAAATTAAACTGAACACTGTTCCGATCCAGTAAGAAAAATCGTTTTCACTGGATTAGAGCACAAAAAATCCATTTCAACCATCTGGTAGAATATGAATTACCACAAACATTTCTA # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCGTCTCCTTCTAGCGGAGATAAGTTGTTAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [21-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 1 1814-2377 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJNUE010000070.1 Lactobacillus delbrueckii subsp. lactis strain CIRM BIA 265 CIRM_BIA265-i1-1_scf70, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1814 36 100.0 30 .................................... GCAGCCACTGCTGGTGCTTAATGGCCAAGT 1880 36 100.0 30 .................................... GCTCGCTTTCATTTAAAGACATTGCAAACC 1946 36 100.0 30 .................................... CTCAATTACGATTTTTCTCAGTCTCTTCCT 2012 36 100.0 30 .................................... GTTCGGGTTCAATTTCACTAGCAACATCTA 2078 36 100.0 30 .................................... AACTGGCCCTCCATGATAGATGTCGTAGAG 2144 36 100.0 30 .................................... ATAAACGATCATTTCAGTTCTCCTTTTTCG 2210 36 100.0 30 .................................... GCGGCTTGGTGTTCAAACAGCACGAGGAGC 2276 36 100.0 30 .................................... GTTGACGGTCAAGCTTTCATTGTCAAGTAA 2342 36 94.4 0 ................C...T............... | ========== ====== ====== ====== ==================================== ============================== ================== 9 36 99.4 30 GTTTTAGAAGGTTGTCTATTCAATAAGGTTTAACCC # Left flank : CAGTGAATCTTTACTTCAAAAGTACATGACCAAATTAACTAGTTATGTAGTTGATGAGCTAAGCGCAGATGGCAGAAACAGAATCATTACCTGCTATCGCGATTTACTAAATGCTGTTCAAGACGAGTTGCTTATGGAAGATTTGCCGCTTGAAATAAGTTTTGACACAGACTTGAAGAAACTCTTCAAATTTGGTGGTCTACACTTCAACAAGACACTCACTCGCGATCCATATGGTATAATCGAGACAGTACTTAGGATACATGACAGGTTAGATCTTAAGTCTACTGTTGTTTTTAGTAATGTAGCTCATTACTTAGATGCAGAACAGTTTAACGAAATATCCAAGCTGTGCTTAGAGCTAAAAAAGTCTATTATTTTTATCGAGTTTTGTAGCCATAAGGATCAGGTTGTATATGGTGATGCAAAATTCAGTTATATCGATGAAGACCTTGTTGATTGGTACTAGCCTTCTATTAAAGCCATGTTAAAAAATAACG # Right flank : CGTTGTGTAGGTTCAAATCCTGTACTCTCCTTTCATGTTTAATTCAACTCCGTCAAGTTATCTAAACATAGTGAGCCTAGAATGTTGTTAAATAAACGTTCTAGGCTCTTTTTGTTACTGTTTGCTTTTGTTGGGTTACGGATAATTTGTAAGCGCCCAATAGCGCGGTATATTAAAATCCCATCCTAGCAATGCTAAGATGGGATTAATCAGTTTATGGGGCTTTACTTACAGTGGAGCTGAACATTCTCAGCCCATGGTAAATAGGCTTCCAAACGTTGATTGTCTAATAATGACAGCTCATTGGGCAGCTTGTCTAGAAGATAGTTGATATATTTGAATTGATCCAAGCCATTTTGCTTGGCGGTTTCGAGTATGCTCATTATGATTGCCATGGATTTGGCGCCGGTACTGCTCTGTGAAAAGAGCCAGTTCTTGCGTCCCATGACGATCTCTTTGACTGCTCGTTCTGCTCTGTTGTTGGACAGTTCAAGGCGACC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGGTTGTCTATTCAATAAGGTTTAACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGAAGGTTGTCTATTCAATAAGGTTTAACCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //