Array 1 77620-80032 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHOMN010000007.1 Bifidobacterium longum strain MSK.11.57 NODE_7_length_153996_cov_332.483, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 77620 36 100.0 28 .................................... TCGGACGGCTGGCCTCGTTTCTCCATCT 77684 36 100.0 28 .................................... AGAACGCCGGAAAGCTGTTCTAGCGGCC 77748 36 100.0 28 .................................... TCCGCAGCAGCCTGCCGCGCTTGAAGAT 77812 36 100.0 29 .................................... ACTACACGCGGTGGACGCCCGGCACGAAA 77877 36 100.0 28 .................................... ATGCACGCGATGGAGTCATGTCCAATGA 77941 36 100.0 28 .................................... AGAAAATGCCCGGTCTCGATCTGATACA 78005 36 97.2 28 .................................G.. TGCTTGAGCCTGGCCCAGCCGCCCGTGG 78069 36 100.0 28 .................................... TAGAGAATGAGATTAAGAATTGCTAAAG 78133 36 100.0 29 .................................... GGGCACAACGACCCCCGCGTAACACCAAT 78198 36 100.0 29 .................................... CCACGAAAAGAAGCCGGTAACGGCATTGC 78263 36 100.0 28 .................................... GAGGCCCGCGACCTGATTTCCAGCGGCG 78327 36 100.0 28 .................................... GCCTCATGATGAAGAGTCGCAAATCATC 78391 36 100.0 29 .................................... GTGAGCTTGTCCGTGTCTTTCATCAGTGG 78456 36 100.0 28 .................................... TGTTTACGCTCAAAAAGCACATTAGATT 78520 36 97.2 28 ......A............................. CCGAGGCCGGTAGGGTTGCGTGTCTGGT 78584 36 100.0 28 .................................... GTTGTAATCGGTCATAATAGTTTTCAAT 78648 36 100.0 28 .................................... TCTCCCAGTTGCTGCCCCTTGGCGTCGA 78712 36 100.0 28 .................................... CGTATTCATCGTGGCCTCTTCGCGGTTT 78776 36 100.0 28 .................................... CGTACATGATGGGGTCCTTGACCTTGTA 78840 36 100.0 28 .................................... TTGGTGGTGTTGGGCGTCCGGCGCAGAA 78904 36 100.0 28 .................................... AGGTCGAGCGCCTCCTGCCATCCGGCCT 78968 36 100.0 28 .................................... ACAGTATTATTGTCCTGATATTCATGTC 79032 36 100.0 29 .................................... TCGTCGTCCATCTCTGTACCTCGGTTTCT 79097 36 100.0 28 .................................... TCCATGACCGCGTCCATCACCTCATGCC 79161 36 100.0 28 .................................... CGTTCCCCAGTGGGGTGAGTGTGATGCC 79225 36 100.0 29 .................................... ACCGATTGCAACGCGAATATCCCGGGTAT 79290 36 100.0 28 .................................... TCCTGCAACTCCTCCTTGCGGGCCTTCA 79354 36 100.0 28 .................................... GTTGTTCCGGGAACAACTGGGAACAACT 79418 36 100.0 28 .................................... CTTGCCTCCGTTCTGCATCCAGCTGTCG 79482 36 100.0 29 .................................... ACGCGGCGAAGAATCTTGTTATCGCGGCT 79547 36 100.0 29 .................................... GTCGCACGTGGCATGGCATGTTGGCGAAC 79612 36 100.0 28 .................................... TGGTTTCCGTGCCGCATTGGTCGCAGTA 79676 36 100.0 29 .................................... TCATGGGACTGTGAGCGGCGGCGGCGTGA 79741 36 100.0 28 .................................... TAGAAGTGCAGATTCCGTTCCTGCAAAC 79805 36 100.0 28 .................................... AGGACGTGCAACGCAAGTATTTCAAGAT 79869 36 100.0 28 .................................... TCGTCGATGTGTTCCAAGAGGTTTGGTG 79933 36 100.0 28 .................................... TATTGTTCGGGTGCGATGGTGATGATCA 79997 36 86.1 0 ..............................TTG.AT | ========== ====== ====== ====== ==================================== ============================= ================== 38 36 99.5 28 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : ATTCAACGGTTCCGGTTTGACTATACCGAGCTCATTGAATGATTTTGCGCAGCAATTTGGTTTATATTGCGAAGGCAAAATCGACAGGTTGCAGGTTCCCGAATATGTAGGCGAGTCATGAAACGCGATGAGGACAGTGGCGGCATGTGGTGCTTGGTGATGTTTGATTTGCCGGTCAAGACAAAACGGCAACGGCATGCTGCAACTGTCTTTAGAAATATGTTGCTCGACATGGGATATGGAATGGTGCAGTATTCCGTATATGTGCGGTATACGCCTACGCAATCGGGTAATAGGGCGACGGTCAAAATGATTAAAGACAATCTGCCAGCTAATGGCTTAGTTAGAATTTTGCATATTAGCGATCATCAGTGGTCCACGGCGGCCCGATTTTCTTCTGGAAAACGTGAGATTGAGGAAGAAACGCCTGACTTTCTCACGCTTTTTTGAACGTAGGAGAGTCTGAAAAGATTGAAAAATAGCCCTTCTTGATAGGCTAT # Right flank : TGCTGGAATGCTTGGGTTGATTTGGCTGATTTAGCTGTGATGGCCGCTGCGGGAATGGCCCTTGCGCGGTTGGCGGCAGAGGTTGCGGCGCGGATTGCGGCACTGATTGTTGTGCCAATTGCGTCTGCGGTGAAAAACATGGCGACGGCTGTGTCTGACTGTTTATCGGCGGATGTTCCGGCTCAGGTTGTGGCTGGAATGGAGAATATTGCGGTTGCGCCATTGTATGCCCCTGCCCCTTCATTGCCATTTCATTGGCGCATGGCGAGGGCTGAAAACCAAGATGATGAATCCTGCATGAGTTATCCGTGATTCCTGTGCGTTGGTACAGCGCGGAAGGTTGAGCAGCCGACATATGCAGGCTTGTCGGTTCACGCGAATATCTTTAAACCTATGACTTCCAATACCCTTCGTATGTCAACCATGTTCCTGCGCACCCTGCGCGAGGACCCCGCTGATGCCGATGTCGATTCAGCCAAGCTGCTGCAGCGCGCCGGCTA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //