Array 1 222590-221584 **** Predicted by CRISPRDetect 2.4 *** >NZ_QBVA01000002.1 Salmonella enterica subsp. enterica strain CFSAN058608 CFSAN058608_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 222589 29 100.0 32 ............................. TGAACGAAATCTGGATCACCGAGGGCATTTTC 222528 29 100.0 32 ............................. ATTTGCGGATCACCTGTCATAACCGCATTCTC 222467 29 96.6 32 ............................T TACGGGTGGCATACGACAGCACAGCGCGTACC 222406 29 100.0 32 ............................. CCCGTCCACTGCTGGATGAAATGATGGAATGT 222345 29 100.0 32 ............................. GGCACGACGCACCTGCTAAAAAATACTACCGC 222284 29 100.0 32 ............................. GGTTACGCGGGCGTCTGTTAAAGAGTCCTCGT 222223 29 100.0 32 ............................. CGCCAGCGCTGAGGTGAATTTTAACGGTGTCA 222162 29 100.0 32 ............................. AAACAACTCTGTCTATTTTATGAATAGTTAAA 222101 29 100.0 32 ............................. CGCGCAACATTCATTACTGCCCACTATTCAGA 222040 29 100.0 32 ............................. AACGCGCCGCCTTAGAAAAACAGCGAGGGGAT 221979 29 100.0 32 ............................. CGTCCTGTACGTGGTAGCGATAATCGTAATAA 221918 29 100.0 32 ............................. ACGCTGAAAAACGATATTTCGCTGACCTATGC 221857 29 100.0 32 ............................. GCTGATACGCAGACGATCACAAACTATATGGG 221796 29 93.1 32 ...........................TT TAATCATTTTGTTTAAATCCCGGATCACCTCC 221735 29 100.0 32 ............................. GAGTTATTGTCACTCGTCAGTGATAATTTTCT 221674 29 100.0 32 ............................. CAAAAGGCCGACAGTGTGTACACCTCTAAAAA 221613 29 96.6 0 ............T................ | A [221586] ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTATTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGAAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAATTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGTTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTAGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 240354-239350 **** Predicted by CRISPRDetect 2.4 *** >NZ_QBVA01000002.1 Salmonella enterica subsp. enterica strain CFSAN058608 CFSAN058608_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 240353 29 96.6 32 ..A.......................... GCCTCAGCATTGTCATAACCCCACGCCTGGCA 240292 29 96.6 32 ..A.......................... TCCGGGGAAAGAACTCGCCTCGTCCAGCGTCA 240231 29 96.6 32 ..A.......................... GCAATATGAATAACAACGTACCACTCATCGCA 240170 29 96.6 32 ..A.......................... GAGCACTTTTACTGTAGGACTTGTATGAATCT 240109 29 96.6 32 ..A.......................... CAATTGCGTTCTTGCTTATGCCCAGCGACTTA 240048 29 96.6 32 ............T................ ATTTCAAACACTCCGGGTCTGCCAGCGCCTCA 239987 29 100.0 32 ............................. CGGCGGCGGACGCCGCTCAGATAGCCAAAACC 239926 29 100.0 32 ............................. CGTTTTTTTTATTTGTACTATTGTCAGTACCC 239865 29 100.0 32 ............................. CGGAAACAAACAAAGTTTTGCGCGATTCCACC 239804 29 100.0 32 ............................. CACCAGGTAACAATATCGTCCCCGACCTTTAT 239743 29 100.0 32 ............................. GCGAAATTCCCCAGATACCGCGCATCGGCACT 239682 29 96.6 32 ............T................ CAAAATTAATGTCCAGGACCTTATTAAGTTAC 239621 29 96.6 32 ............T................ CTCGGGGATTTTGTGCCACCCAAAACGCTCGC 239560 29 96.6 32 ............T................ TTGCCACAACCACAATGGATCAGGAGCAATTA 239499 29 96.6 32 ............T................ GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 239438 29 96.6 32 .............T............... CCGGATGAAAACGCCTACCCGGAAGACTACGA 239377 28 89.7 0 ............T...........G-... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 97.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATGCATTACTAATTTTACGGACGGCCTGCCGATGCCGTCTGTGAGTCATCCATTACCTCGCCTTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATTATAGTCTGTGTACCAGTAATGGCTGGTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCATTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGACAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAAGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.44, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : TTCCCCGCGTCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.30,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //