Array 1 55645-55173 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUBL01000015.1 Actinomyces dentalis DSM 19115 G446DRAFT_scaffold00013.13_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 55644 37 100.0 36 ..................................... ACGATTCCTCCTAAGGAATCTTTTTCGCTCAAAGCA 55571 37 100.0 36 ..................................... CAACCGCCTTTTTGGCGGCAGTCCCCCAGGAGCCGG 55498 37 100.0 35 ..................................... TCACTCCTCCTCGTCGTCGAGGATGTCCTCGTCGT 55426 37 97.3 35 ......................C.............. CAGCCTGACGCGCTGGGTGAACCCTTGTAGCTAAA 55354 37 97.3 36 ......................C.............. GCTGGTAAAAGCCTGCAAGGCGAGCTATTTTCGGCG 55281 37 97.3 35 ..........................C.......... GGCATCAATTTGATGGGCTGACCCTTCTTTGGAGT 55209 37 89.2 0 ...T....A.....T....................C. | ========== ====== ====== ====== ===================================== ==================================== ================== 7 37 97.3 36 GTCAGGGAGCACCACGCACCTGTAGGTGCATTGAGAC # Left flank : AATTGGTCGTTGCACAGAGGGCGGTTCCTCGAAAATCAGTCCAGACGTCCGCAGAATCCCGTAGAATGATCTTCCCGGGCGCGCGGAATATCCGACGACGGTCTTATCCGAGGCCGCCGGAATGGCCGGGGGTCGGGGTCGTCCTGGTCGGGCGCGGGGCGGTCTCGGCAGACTCGGTCGGGTGCGGAAGGCCCTCGGCGGAGTCGGTCGGGGTCGGACCGGCTGGTGCTGGAGGTGCTGCTGTGGCTGGTGGGGCGGTATAGTGAACGGGGTGTCATGTTGCACGTTTGCAGTAAGGCGTTTCAACGCCGACCTTTCCGCATGACTTCGTCAGAAGTTGGCGCGCGGAGGGCTCGAAGGGCCGTCGGTGGCGCTTGGCGTGATTCCGCCACTATGTGCTACTCTGGGCCCGGTGCTGGCCGGTCCGGAGGGGTGCTCCCGGGGCCGGTGGCGCTCCGGGCCCTCGAAGTGGCGTCATACCGCCGCTCCCGAGGGCAGGG # Right flank : TTTCTCTCCGGGAACGGCGGTGCGGAGGCCGGGATGAGTGTGGTGGGGGGTGACGACCTCCCGCGGGGCTTGGACGGGCCGGGCTCCTGGCGGGCTCCCTCTCGGGCGAGTCGAATTCTTCTCGGTCCGTGCGGGGGTGTTGCACATCGGAGAGGAGCGTCCCCACGAACCGATTCCGGGTTTTCCGCGCGATTCCGGGATTTTCCTAGAACGTCGGTTTTCAGCGGATGGGTTCCCATGTGCAGAGGGGCCCGCTCTGCACATGGGAGGATTTCAACAACGTTGAGCACTGAGGCGTTTCCGCATGATTCCGCCGATCCCCCGCCGACCGACCCCGATCGAATGTGCAGCACCACCCGGGTCGCCTCGATACCGCACATCCGAGCCTGGCGGCACCGCCCCAACACCCCGGACCCGACCCCGACATCGCCTCGCCCCCTCGCGCCGTTCCCGGCCAGCCCCGGGATCTTTCCGGTGAGAAAGACTCACTGATACGCATG # Questionable array : NO Score: 2.97 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGGGAGCACCACGCACCTGTAGGTGCATTGAGAC # Alternate repeat : GTCAGGGAGCACCACGCACCTGCAGGTGCATTGAGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.90,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [31.7-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 1 124752-124417 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUBL01000004.1 Actinomyces dentalis DSM 19115 G446DRAFT_scaffold00004.4_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 124751 29 100.0 32 ............................. GACCCGGCCGTCGGCCAGGTGGAGGTTGACCG 124690 29 100.0 32 ............................. GCCGCGGCCGCGCGCAGGTCGTCGCGCAGCCC 124629 29 100.0 32 ............................. CGGCGCCGAATTCTTCTCCTCGCCGCAGCGGT 124568 29 100.0 33 ............................. TCCAGCGACAACGGCAGCAGGATCGACTTCCAG 124506 29 100.0 32 ............................. ACCGCCCAGCTCAGGGCCCGCAAGACGGCCGC 124445 28 93.1 0 .......................-.C... | A [124419] ========== ====== ====== ====== ============================= ================================= ================== 6 29 98.9 32 GTAAACCCCGCGCGAGCGGGGATGATCCC # Left flank : | # Right flank : TATAAGTTAAGTGCGAAGAAAGAGGAGGCACCATGCCCCGAATCAATAAAGATTCTCGGTCACCGGCCGAGTTCCGAACCATGCGAGAACTCCTCGGGATCTCCGGGCCCGTCCTCGCCGACGCGCTCGACGTCAACCCCCGCTCGCAGCGGGCGTGGGATTACAAGACCACGGCCCCGGACACCGCGTGGGCCGTCATCGATCAGCGGATCGAGTGGATCGAGGAGACGGCCGGCACCATCCTGAACGAGTCGGAAGACGCGTCGAACAACGGGGAGATCATTCTCGTCGTCTATCCGAACGATGATGCGGCCCGCCGAGCGGGGTGCTCGGTGCCCGCCTCCTGGCATCGGGCCGCAATGGGGCACGTCGCCATGATTCTCCGGATGAGGGGACGCACCTGCCGGATCGAGTACCCGCCCGAGGGGTGACACGGGAGTGACCGGCAGTGGCGCCGGCCGACCCGCCGGAGGAGTGACACGGATCGACACAGATCGCCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAACCCCGCGCGAGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 29693-29968 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUBL01000048.1 Actinomyces dentalis DSM 19115 G446DRAFT_scaffold00043.43_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================= ================== 29693 28 100.0 33 ............................ TCCCCACGGCGTACTCCCGTAGGTCCACGACGG 29754 28 100.0 33 ............................ CCGCGCCAATATCGTGTGCGGGCCCGAGGGGCT 29815 28 100.0 39 ............................ CCGCCGACGCGGACCATTCCGACCGCACCCGGGCGGTCC 29882 28 78.6 25 C..............A.CT......G.G TCATGCTCCGGACCATCCCGACCGC A,T [29894,29906] 29937 28 89.3 0 ....G........T.............C | G,T,G,G [29940,29946,29962,29965] ========== ====== ====== ====== ============================ ======================================= ================== 5 28 93.6 33 GCCGCCGCCCCGCCCGCGGGGGCGCACA # Left flank : GGCGGGGGTCTGACTGCTGTCTGACACGAGCATCTCCAGTTTCATTTCGATGAACGTAGAGTCGCCGTCGTGACGACGGCGGCGGGGGCCGCCGCTCCGGCGCCCGGCGCCGGACCGAGGAGTCCGGCGACCGACGTCCGGGGCGGCACCACCTGCCCGACCTTACAACCTGCTCGCGCCCGCGCAACCCATATCCGGTGGTCGGACCCGGTCGCGACCACAACATGTTGTGGTCGCCGCACCTTCCGCCACCAAGGCCGACGGCGGCTTCCGCCGGGTTCTCGCGAGGAGGGCGACGAAAACTTCAGGTGACCAGCATCATATTTCCTTAGGCGTCGTCGTCCCGATCGGCGTGTCCCGACCGCTCACCCCGCTCACCCCGCTCACCGGCGTCGTCGCCAGGGCCGTCGCCGCCGACGATGTCCCGCGCGTCTCGACCGGCCGCGGCCACCGCCGGAACGCGACGACTTTCGGGAACAACGTCCTGCACGTCGCGACCG # Right flank : CGTCACTGCCGTCGTCGAATAAGACGCCGCATCAGATGGGGACCGCCTCGTGCATGACGAGGTCGTCGGGGTCCGGGGTCCGCTCCTCGATAAGGCCCTCCACACCCCATCCGACGACCTCCTCAGGGCTGATGAGCCCGAGGACCCACTGGTCGGCGCAAAGGGCGAAATCCCTTTCGTTGAAGGGAAGGGCGTCGTAGTCGTAGTCTCCGGGAGGATAGCTCCCCTCGTCCCACAAGCAGGACTCGAAGGGCAAGGGCGTGCCGGAGTAGTCCAGGGACATGTCACTCCCGCTGTCGTCCTCGTCGAAATAGTCGTTGCACTCGATGCACACGTAGCGATCCCAGCCGGGGGCCCTGACAAAGAACTCCACCGAACTGACAACGGTTGAGGCCCACATCGACCACACGCCAAGCCCGTCCGGTCGATGCTCCTCCGAAGAAAACCTGTACTCCAGGTTATTGAGCACGCTTCCGTCCCCGCCCAAAACAATCGTCGAC # Questionable array : NO Score: 2.60 # Score Detail : 1:0, 2:0, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCCGCCCCGCCCGCGGGGGCGCACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [2,0] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.80,-9.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [28.3-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 1 291-18 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUBL01000065.1 Actinomyces dentalis DSM 19115 G446DRAFT_scaffold00060.60_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 290 29 96.6 32 ............................C TGCTCCCGACGGGAGTCACCCGTTAGGGTGAC 229 29 96.6 32 ............................G GCGGGCGCTCCGCAACAATGCGGCCCCACACA 168 29 100.0 32 ............................. GAACGCCGATTACTACAGGTACGATATCACGC 107 29 96.6 32 ............................C GATGAACCCCCGGCCCACCCACTCCGATCCCA 46 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 98.0 32 GTAAACCCCGCGCGAGCGGGGATGATCCT # Left flank : GCGGCGCGCGGTCGCCGGCGGGGCGAACTACGCCGAAGAGGAGGCGGGCGAATGGTAGTGCTCATCCTCTCGGCGGCCCCGGCCTCGCTGCGCGGCTCCATGACGCGATGGCTGCTCGAGGTCTCCCCCGGAGTCTTCGTCGGTCACCTGTCCGCCCGGGTGCGCGAGCAGCTGTGGGAGCTGATCCGTGAGAACCTCGGGGAGGGGCGGGCGCTGCTGATCTGGTCGGTGCGCTCCGAGCAGCGGTTCGCAGTCGCGTCCCTGGGGCATGAGCGCGAACCTGTGGACATCGAGGGCTGCCTGGTGATGAGGACGCCGTACCAGCCGATCAAGGGATCTCAGGCGATCCCCGGCGCCGTCAAGCCCCCGAAGGAGTCGTGGTCCATCGCGGCACGACGACGGCGCTACCGCAACTCGGCGGAGCGGGCCCTGGGTCGGCAGTGAAGGCAGCGGGGGTCTGGTAGACTACGGGTTCGTTGGGATTCCAAGGATTCGCAAGT # Right flank : TTCCCACCGTTCCCCGCT # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAACCCCGCGCGAGCGGGGATGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [10.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 16990-15485 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUBL01000065.1 Actinomyces dentalis DSM 19115 G446DRAFT_scaffold00060.60_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================ ================== 16989 29 96.6 32 ............................T GGCGTCGTCGACACCGGCGCCCCTCTTGACGG 16928 29 100.0 32 ............................. CTTGACGGCGCCGGAGTGCTTGACGCTCATCT 16867 29 96.6 32 ............................A ACCGAGCCGCGGCGGGACGAAAAACCGCTACG 16806 29 100.0 32 ............................. GCCGCCGCGCGGCGTCGAGCCCAGTCCCTTAC 16745 29 100.0 32 ............................. ACCGGCGCCTGACCCCAGCGCCCGGCCCCGCC 16684 29 96.6 32 ............................T GCCGACCATCCCGACCCGGCCTCGAACCTGGT 16623 29 100.0 32 ............................. GGGGCCATGGTGCAGGCGCTGCCCCAGATCGA 16562 29 96.6 32 ............................G GCGGGCGGAACGAAGCTGACGTGCGCGTGGGT 16501 29 100.0 32 ............................. GGGGCCATGGTGCAGGCGCTGCCCCAGATCGA 16440 29 96.6 32 ............................G GCGGGCGGAACGAAGCTGACGTGCGCGTGGGT 16379 29 100.0 32 ............................. GCTGATGCGTCCGGGGACCCAGTACTTCAGCA 16318 29 100.0 32 ............................. ATCGCCATCGCCCGTCAGATGCGGGAGAAGGG 16257 29 100.0 32 ............................. ACCATCCCGGGAACCGAGACGATGTACTTGCG 16196 29 100.0 44 ............................. CGCCCCGTCCCCGGTGACGGTGGCGGTGGCGGTGGCGGTGATGA 16123 29 96.6 32 ............................G CGTCCGCGTCGTCAAACGGTGGCTCGCCGCCC 16062 29 96.6 32 ............................G CCTCTTGATCCGCTCCTCGATCTCTCGGATCT 16001 29 100.0 32 ............................. GGGGTCGGTCTCCCGCACCTCCTCGACAATTC 15940 29 96.6 32 ............................T CCGGGCGATCGCCTTCTTGTGCCGGTTGTTGA 15879 29 96.6 32 ............................G CTCCTCGTACTGCTCGGGCGTAATCGTCCCGG 15818 29 96.6 32 ............................G CCGCACAATAACATGCAGCCCTACGCCGCCAT 15757 29 96.6 32 ............................T CCGATCCAGCTCGCGCGGGGACCCGACGATCA 15696 29 96.6 32 ............................G CCGCCGGCCTCGGGGACCCATCCGGGGTTGCT 15635 29 96.6 32 ............................T TCGCGCATCGACTTCGAAACCGAGGACCTGGT 15574 29 100.0 32 ............................. GCCGCCAAGCACCGGCTCGATTACAAGCAGTC 15513 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= ============================================ ================== 25 29 98.1 33 GTAAACCCCGCGCGAGCGGGGATGATCCC # Left flank : CCCCGCCAGTCCGGGGGCTTTCCTGGTGAGAAAGGCTCACTGTCGAGCCGGGTCTGC # Right flank : GCGGCCGGAGTGAATCACGACGCTGGCCGCCCGCAATCCCCTGGAAGAGGGCCACCGAATGCGCCTGGCAATTGATCGATCGTTTCGGGTTGAACTCGATATCCGTGAAGGCAGCGCGGTGCTCCAGCTCGTTGACCAGTTCGGGACGCCCCGCCAGGGCGCTCACGTACAGCCAGTCGTAGAAGAATGTCCGCGGTTCCAGGCGGAAGACGCTCAGTTCCGCCCCCAGGACGAGCGGGGACCCGCCCGAGACCTCCAGCATCCGCGCGCCCGGGCGCGCGGACAGGAAGAAGCGGTGAAGGCTGTCGACGGACCGCTGCTCCTGCTTGAGGGAGAACCCCGGGTGGAGGGTGAACTCGGCGCTGACCTCGTGGACGTGGGACCTCGTCCCCAGGGGTGTGAAAACAGGCCGCCGCGCCATATCAGCTCCCGTCCCGATCCGCCCCCGTATCGATCCGCCCCGTCTCAGTGGTGGTCCCGGTCGGCGTCGGGAACCACCT # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.65, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAACCCCGCGCGAGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [30.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 7913-8184 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUBL01000076.1 Actinomyces dentalis DSM 19115 G446DRAFT_scaffold00070.70_C, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 7913 28 100.0 33 ............................ ACGCCCATCACCCCCTCACATCACGCAGACACG 7974 28 100.0 33 ............................ TTTAGCATTGAACAGGAAATAGTAAACGCAGGA 8035 28 100.0 33 ............................ ACTTGGTCAGCACCGAGTGGACGGCGTCGACAC 8096 28 100.0 33 ............................ CCGTGCTGCATCCTGCTCCAGGCCTCTTGCATG 8157 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 5 28 100.0 33 GCCCACCCCCTGTACGCCCGGGGCAGGG # Left flank : GACATAAGCGGAGTGAGAGGCGTCCCCGACGAACGAGATGCGGCGGGGCCGTGGCCGAGGGCGTGGGCGGCACGGCCCTGGCCCGGGGCATGGGCTGCCTGGGGCGCTCCACCCTCGTGGGCGGGGTCTCGGGCACCGTCGCGGGCGGCTTCGGCGGCGCCGCCGGCTACCTCACGGGACCCGGCCCGCACACGGTGGGCGGGTTCCTGGGGGCCACCGGCGGGGGCGCCGTCTTCGGCGGCTTCACCGGCGCGGGCGCCGGCGCGCTGTCGTCGGTCACGAACGTCTCCCGGTTCGGGTGCTTCCCGGCCGGCACCCGGGTGCTCATGGCCGACGGGACCGCCAGGCCCATCGAGGAGGTGGAGGCCGGGGACCGGGTCGCCTCGGCGGATCCGGACACCGGCCGCCCGGCCACCGCGACGGTCACCGCCACGTTCACCCACCGGGACGTGGACACCCTGCGGATCACCACCGATCGCGGCGAGCTGGTCGCCACCGCC # Right flank : GGCTTCGTCCCCGCCGGGGACCTGAGGCCCGGCGATGTTCTGCGCGACGCCGACGGGCCCGCCGCCCGCGTGATCCGCGTCCGGCCCGCCGGGCGCGCCCGGACGGTGCACAACATCGAGGTCGACACCACCCACGCCCACTGCGTCGCCACCACCACCGGCACCTGGAAGCTTATTCAGCGGGCGCCTGCGTGCATTTCCGGGAAACGATATTATGATGGCCCGCTCCCATGAGGTACAATGGTTTACGAAGACAATATCCACGACCTCATGAGGAACGGACCATCGCCATAGTATACCACGGGACTGCCCACACCCAAGTTCGCCGATCTGCTCATCCGCCTGCGCGAGGAGGGCGTCGAGGGGTATCCGCCGAGCATGGGGCTGAGAGACTCCCTGCGGGCGGCGCTGATCCGCATGCGTCACAACATTCCGCAGGCGGTGATCGGCGAGCAGCCGGGTGTGTCCCAGCCCACTATCTCGCGGGCCATCAAGGCCAT # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCCACCCCCTGTACGCCCGGGGCAGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [26.7-21.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 1 1266-17 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE386865.1 Actinomyces dentalis DSM 19115 G446DRAFT_scaffold00007.7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1265 29 100.0 32 ............................. CTCACGCCCCACGCGCTGAGCGTCAAGGCGCT 1204 29 100.0 32 ............................. CCGAACCCCGCCGACCGGCCCACCTACTCCGA 1143 29 100.0 32 ............................. GCGGAGCGCCCCGACGACGCGGACTACGCCGC 1082 29 96.6 32 ............................G AGTCGGCGCTCCAACGACCCCCTGAAGGCCAG 1021 29 96.6 32 ............................G GCGAAATCGGATGCTCTCACAGACGGGGCGTG 960 29 96.6 32 ............................T AGATGATAGACGATGACTATATTTGGTAAATG 899 29 100.0 32 ............................. CTCACGCTGCCCCAAGTGGTCTCCCTGGTCTC 838 29 96.6 32 ............................G GTGCCGATAAGTACCGTTATGACAATTTACTT 777 29 100.0 32 ............................. CCGGGTGCTCCCCTCATCATCGACCCGTACGG 716 29 96.6 32 ............................G AGACGCAGAACACAGATTTAAGGCTTGAGATT 655 29 96.6 32 ............................G GCCCTGGGGTGCAGCATCACCCTCCAGGAGCA 594 29 96.6 32 ............................A CATACGGTCGAATGCATAAAATGACAATAGAT 533 29 100.0 32 ............................. ACAGCACCAACCGAGAGGAACCGAGAGGAACC 472 29 96.6 32 ............................A TATTGTGAATTGTGGCCCAGGACACACCCAAA 411 29 100.0 32 ............................. AACGTTATGTTCAATACTTCCCCCACGTGATC 350 29 100.0 32 ............................. CGACTCTATGAGGACGCCTACGCGGTCCTCAC 289 29 96.6 32 ............................T GCAATAGACGGTTAAAAATTGCCGCGGGCGGC 228 29 100.0 32 ............................. TAAATATCCGCGGCAATGCAATAGACGGTTAA 167 29 100.0 32 ............................. GCGCGAGCACTGACCAACCGTCCGCCCCGCGG 106 29 100.0 32 ............................. GTGACCGAGGGGCGCATGTCACTCGTGCGGTT 45 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.5 32 GTAAACCCCGCGCGAGCGGGGATGATCCC # Left flank : CCCGCCGTCCGTAAACCCCGCGCGAGCGGGGATGATCCCGTCACCCGTGAGGCCCTCCGCGAGGCCCTCCGGTAAACCCCGCGCGAGCGGGGATGATCCGAGCACAGTGAGTGTAGCAGGATGTAGCGTTTCGTAAACCCCGCGCGAGCGGGGATGATCCGATGGAGATCTCCTCCGTCCGCGTGTCATAGGGGTAAACCCCGCGCGAGCGGGGATGATCCTCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGGTAAACCCCGCGCGAGCGGGGATGATCCGAATCGGGCGATGGCGTCCCGGTCCCCGATCGG # Right flank : CTCGTAGGGGGTGAACG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.97, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAACCCCGCGCGAGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [10.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2366-1544 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE386865.1 Actinomyces dentalis DSM 19115 G446DRAFT_scaffold00007.7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2365 29 96.6 32 ............................C CGAGAGGAACCGAACAATGAACCCCCGCCCCG 2304 29 100.0 32 ............................. ATAACGCTGTTATGTGCATGCGTGAGTAGCAA 2243 29 96.6 32 ............................C GCTGTTATGTGCATGCGTGAGTAGCAAACCCG 2182 29 100.0 32 ............................. TTTCGGCTGGCCGAAACATACTGTGTGTGACG 2121 29 96.6 32 ............................T CGTCTGTACGAGGACGCCCACGCGGTCCTCAC 2060 29 96.6 32 ............................C CCGCGCGAGGGTGGGTTGGGAGTATGGAAATT 1999 29 100.0 32 ............................. TCAAAAATAGATAACGTAACCTACGCCACATT 1938 29 96.6 32 ............................C GCTTGTCTAGTGAGTACCAATCCGAAGCCGAC 1877 29 100.0 32 ............................. ACAGACCTCGGAGGGTTGACAGGGTTGCGGAG 1816 29 96.6 32 ............................T TAACCCCCACTATCAGCCCGGCCCCGCCGTCC 1755 29 96.6 32 ............................C GTCACCCGTGAGGCCCTCCGCGAGGCCCTCCG 1694 29 100.0 32 ............................. AGCACAGTGAGTGTAGCAGGATGTAGCGTTTC 1633 29 100.0 32 ............................. ATGGAGATCTCCTCCGTCCGCGTGTCATAGGG 1572 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.1 32 GTAAACCCCGCGCGAGCGGGGATGATCCG # Left flank : CGCGACGAGCCGCCGGATCTTCTTCTCGATCATGCTGGAGTCGGTGGTGGCGACGGTCGTGGCCGGCATCGTCGGCGTCGGCATCGCGGTGGTGGCCCTGCGGGTGGTGCCACTGAGCGCCATTCTGGATATCCCGGTGCCGGACAACCCGCCCTTCCCCATGTCCGCCGCGCTCATCGGACTGGTGGCGGCATCCGGGGTCGGAGCCCTGGCGGGGATCATCCCCGCGTTCGTGGCGGTGCGGATCCGCCCGATCGACGCGATCCGCTTCTAGCCGGATGACGCTGCCACTCGTCTGGGCGTGTCGGAGCGGTTCCCGGACCGGGGCCGGGAAGACCCGCGGTGGCCGAGTCGCGTCCAGCACGTCCGGCAGTGGAGAGGCGCCGCCCCGAACGACGGCGACGCTACGGCGACCCGGCGGAGCGGGCCCTGGGTCGGCAGTGAAGGCGGCGGGGGTCTGATAGACTACGGGTTCGTTGGGATACCAACGATCCGCAAGC # Right flank : CAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGGTAAACCCCGCGCGAGCGGGGATGATCCGAATCGGGCGATGGCGTCCCGGTCCCCGATCGGGTAAACCCCGCGCGAGCGGGGATGATCCCCTCACGCCCCACGCGCTGAGCGTCAAGGCGCTGTAAACCCCGCGCGAGCGGGGATGATCCCCCGAACCCCGCCGACCGGCCCACCTACTCCGAGTAAACCCCGCGCGAGCGGGGATGATCCCGCGGAGCGCCCCGACGACGCGGACTACGCCGCGTAAACCCCGCGCGAGCGGGGATGATCCGAGTCGGCGCT # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAACCCCGCGCGAGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [5.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 12299-12153 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUBL01000011.1 Actinomyces dentalis DSM 19115 G446DRAFT_scaffold00009.9_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ===================================== ================== 12298 24 100.0 37 ........................ AACAGGCCCACGACCATGAAGGCGACGATGAGCGGCG 12237 24 100.0 37 ........................ GCTACCTCACCGACGCCGCCCTGCGCACCCTGGGAAC 12176 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ===================================== ================== 3 24 100.0 38 GGGCCGCGCGTATGCGGACGCCGG # Left flank : AGCACACGCCGCACAACTACTGGTTCACCCGCTACCCGGCGGGCCGCGAGGCCACCCTGTGGACCGGCAACCTGGACGTCAAGTTCGGCAACTCCACGCCCACCGCCGTCATGGTCCAGGCCTGGGCGGTCGACGGCGAGGTGCACGTGCGCCTGTGGGGCACCCCGTACTACCAGGTGAGCATCGACAACGGCACTCCCCACAACTACCGCGCCTACCAGACCCAGCGCCAGAGCGGCGGGAACTGCGTCCCCTACGGGGGCGGCGCGCAGGGGTTCGACATCACCGTCACCCGCTCGCGGACCAAGCCGGACGGCCAGAAGCTGCCCGACGACGTCCTGAGCACCTCCTACGACTCGGACAATCCCGTCGTCTGCGGCTGAGCCGGGGGCCGCGCTTGCCGTCGGGCGGGCCCGCCCGGGAGGGCCCGGCTGAGTCGGCCGCGGGCGGGCCGCGCGGCGAATGCCGGCGGGGACCGGGCGCCGGGCGGCGGCATGGCG # Right flank : TCGTGACGAAAAGACGCGCGCGTCCCGACCGGCGGACCGCGTGCCCAGGCCCACGTTGGCGCCGTCTTGGGCGGCGGGCGCCGGCGGACGATACTGGGGCCGTGCATGCGGCCGCGCCTGCGGCTTGACCGGCGAGGAGAGGAGATGCGCATGACCTACGTCATCGCCCAGCCCTGTGTCGACGTCAAGGACCGTGCGTGCGTGGACGAGTGTCCGGTGGACTGCATCTACGAGGGCGAACGCAGCCTGTACATCAACGCCGATGAGTGCGTGGACTGCGGCGCCTGCGAGCCGGTGTGCCCCACGGAGGCGATCTTCTACGAGGACGACGTCCCCGACGAGTGGGCCGACTACACCCGCGCCAATATCGACTTCTTCGACCTCAAGGGCCTGGGGTCGCCGGGCGGCGCCCAGGCGGTCGGCCCGCAGCCCTATGACGACCCCATGGTCGCCGCGCTGCCGCCCCAGAACGAGGAGTGGAAGGAAGCCAACGGCTACGA # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGGCCGCGCGTATGCGGACGCCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [2,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.40,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [26.7-10.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA //