Array 1 98248-102286 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB849557.1 Acinetobacter venetianus RAG-1 = CIP 110063 acLse-supercont1.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 98248 28 100.0 32 ............................ CTACTATCAATTCGACACCACGATCATGAATA 98308 28 100.0 32 ............................ TACATACCCCGAATCGTCGGACGGACAATGGT 98368 28 100.0 32 ............................ ATCGAAGCCAATGCAGCAGGATTGAATGACTC 98428 28 100.0 32 ............................ TTTGAACGATGATTTTAATGATGGGTGGTTAA 98488 28 100.0 32 ............................ TCGATAGATCACTTGGGCAGGTTGAACAAACA 98548 28 100.0 32 ............................ AAAGCCCCTCGACCTGCTGTAGCTAATACAGA 98608 28 100.0 32 ............................ GCAAGAGTGGGCAGTAGGGCTAATTTGTACGG 98668 28 100.0 32 ............................ ATGAGCGAGTTGTTGGAAGTGCATCTAGAACA 98728 28 100.0 32 ............................ TTAATCATCAAGTTGCCCGTACGGATGACACT 98788 28 100.0 32 ............................ TCAATCCCTAACCACTTCCACGCCTTTAATTC 98848 28 100.0 32 ............................ TTGATCAGTCAGCAGGCGCTGTTGGATTACTC 98908 28 100.0 32 ............................ GACATGATCAGCGAATTGTGTGAGCCACTTCC 98968 28 100.0 32 ............................ TTTACTTGAGCATCAGAAAGCATGTTGTTATA 99028 28 100.0 32 ............................ AGCAGGGTTTACAGCTGTTGAGAATAGAGATG 99088 28 100.0 32 ............................ AACGACAATGATGATCATGCAGATTTAGTAGA 99148 28 100.0 32 ............................ TTAAACATGCTCACCTCCAATGCTTTCGTAGT 99208 28 100.0 32 ............................ ATCATGAGCCATACCAGTTAAGTTCATAGACT 99268 28 100.0 32 ............................ TCAACGGAATCGGTGGCTGCACCATCGAAGAA 99328 28 100.0 32 ............................ TTATGAAGAAGTGAAAAAGGCTGCAAATAAAC 99388 28 100.0 32 ............................ GAAATCTGCCAAGGGTGATCCTGATCCAAAAT 99448 28 100.0 32 ............................ ATCATGAGCCATACCAGTTAAGTTCATAGACT 99508 28 100.0 32 ............................ GACATAAGGAATTGCTGCAACTGAGTTATATA 99568 28 100.0 32 ............................ GCTACATCTGCAACTTGCTGAAATAATGGCTC 99628 28 100.0 32 ............................ AAAGCAATCACTGGGCAATTGAACTCTTTAGC 99688 28 100.0 32 ............................ TCAGTTTTTCTGAATTCTTCTGCAATCGCTTG 99748 28 100.0 32 ............................ AGGCATTTCGAAAGCTTGGTTTGGATGCAACG 99808 28 100.0 32 ............................ GCTGATATATATCTTTGCTCCCACGTTAAAAA 99868 28 100.0 32 ............................ ATCAACAACAGATGCAAATATTGCTTTATCAG 99928 28 100.0 32 ............................ CTACTGGGGCATTACTAATAGATGGGGTTTAA 99988 28 100.0 32 ............................ AATGCCCAAGTTCAGGAACTTTACTTGTTGTT 100048 28 100.0 32 ............................ ATTAAATCTGGATTAGTCAAAGGCCTTTCAAT 100108 28 100.0 32 ............................ AAGAGTTGAGAAGAAATTAGATAAGATCAATC 100168 28 100.0 32 ............................ AATGCACAGATACCACCCAATACAGCCATCCA 100228 28 100.0 32 ............................ TGAATTACAGAAATTCGCTAAAGGCTTATTAC 100288 28 100.0 32 ............................ TGCATTCTCTAAAGATGACTTACTAAAAACTT 100348 28 100.0 32 ............................ TATTGCAAGCACAGCCAAAATTATTGAAATTA 100408 28 100.0 32 ............................ TTGTAATGGCAGGAAGTACTGGTACAGGTAAA 100468 28 100.0 32 ............................ ACTACCTGAGCTTCTTCTAAAAACTTACCTCT 100528 28 100.0 32 ............................ CTTATGACGATGTTCATCGAGTTCAGCTATGA 100588 28 100.0 32 ............................ TCGCTAAACACGCCACCCATGGCGTTTAGTTT 100648 28 100.0 32 ............................ ATTGAAAGAACCCGATACATAACCCTCACCAC 100708 28 100.0 32 ............................ GTCATCAGTTGGGGGAGCATTTTTTATACGAT 100768 28 100.0 32 ............................ TTGAAGAAGTTTTGCAGGCGAAGCCTTAATCT 100828 28 100.0 32 ............................ CAACGATGCCAATGGTGATACCACACCTAATA 100888 28 100.0 32 ............................ GTTATGACTGACTTTCTGAATCAAGAGTTTTA 100948 28 100.0 32 ............................ ATCACTGTACCAGTCCATAAAAACAAACATGG 101008 28 100.0 32 ............................ TTTTTCTCTTATTAAGCAGTACATTGCGAACA 101068 28 100.0 32 ............................ AGAGTATGAAGGCAAGAATATGGTTTATGTAT 101128 28 100.0 32 ............................ ACTCGATTGAGTGATTTATCATATAAAAATGT 101188 28 100.0 32 ............................ GCGATCCAAGACCTACGCGGACAATTCGGTCT 101248 28 100.0 32 ............................ TAAGCAAGAGCATGATCATGATGAAAACTACA 101308 28 100.0 32 ............................ TGATGCAAAACATCATAAACGTAGTTACTTTA 101368 28 100.0 32 ............................ TATATCATTTTTTGTTATAAACATCGAATTTA 101428 28 100.0 32 ............................ TATCCGATTGAATTAGCGTAACAATTATTTAT 101488 28 100.0 32 ............................ TTCCCCAGCTCAGGACTATATCGATAAGAAGA 101548 28 100.0 32 ............................ ATCAAGCGAATGATCAAGATTATCCACTACAG 101608 28 100.0 32 ............................ ACGGTCGAACTTCTGTGATTTAAAAATGAGAC 101668 28 100.0 32 ............................ ATATGCTAAAACACAGTAGAAACCGAGCTATG 101728 28 100.0 23 ............................ TGAAAGGNNNNNNNNNNGCTATG Deletion [101779] 101779 28 100.0 32 ............................ TGAAAGGTGAGTGTGATGTCAAACAAAACTAA 101839 28 100.0 32 ............................ AATTGCATCTTGATAAATTCCTGAAGCATATC 101899 28 100.0 32 ............................ TAAAATAACGATTCTTAATTCGTCGTTTATGT 101959 28 100.0 32 ............................ TACGCTACGAGGCGTGTTTGAAGTGAATCTGT 102019 28 100.0 32 ............................ GCACTTGTTGCACTGATATAGAAATTGTGTCA 102079 28 96.4 32 ....A....................... TGATCCTGAAACGGGTGCTAAATCATTCTCTT 102139 28 100.0 32 ............................ GACTTCGGGGTTGTGAACTTCTTCTTGAATAA 102199 28 100.0 32 ............................ TTTACCATCAAATCTAAATCTGATTTGAAATG 102259 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 68 28 99.9 32 GTTCGTCATCGCTTAGATGATTTAGAAA # Left flank : TCGATGGGCAAAAGCGTTATATAAAGAGTTGGCAAAAGGTTTTAAGTTTAATTTCACTCGCGATGAGGGTAAAAATTCCCACGATACCATTACAGATATAGCCAATAATTATCTGGATCATGGTAATTATATTGCTTATGGATATTCAGCCGTTGCCCTAAATGGTATGGGAATTAGTTTTGCCTTACCTATCTTACACGGTAAAACTCGCCGTGGTGGCTTGGTATTTGATATTGCTGATTTGGTTAAAGATGCTTTTGTCATGCCACTTGCTTTTTCTTGTGCTGCGAAAGGACAAAATCAAAAAGACTTTCGTATGCAATTGATTGAAACTTGCCAAGATAGTGATCTGTTAGATTATATGTTTGGCTTTATTTCTGAGCTATGCTCTAAAATCAAATAAAATCATAATATTACAAACACAACTTCTTTTTGAAGTATTTTCATTCATTAAAAGCTTATATAATTGATTTTAGGGGTTTTGTGCTTACTTAACTCTA # Right flank : AATGAATAAACTCAGTTTTGAATGTAGTTTTAGTAAATTAATTCACCAACAATTCTCTCGCTTTACTCAACAAGTCCTGTTGATCAATCTCTGAGGGATGGAAACTAGCTTTATAAAATGCCAAATAATCAGGTAATAAACGCCACATCATTTGTGTTAGGCCGACTAGCGTTTTCGCATTTTTTATAAACTGTCTAGGTTGATACAAAGTACTTTTACGGTCTTGCCATACTAGGTGACTTGTCATGATTACAGTACTGCTAATAAACCCTAAGGTAATAGTTCTCATGCTTCGACGGCGCTGAGCTAGATTATCAAAAACCTGTTGATATACATCAAATGCCACATGTTTATGTTCAATTTCTTCAACTGCATGCCAAAGCCAAAGATTTTTCATATTTTCAGATAAACCTTTGAACATAACATCAGGATACTTAAGCATGTACCCCGCCATCATCGCAGTAAAATGTTCTAATGCAACAGTTGCAGCCAATTGGCGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGTCATCGCTTAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.29%AT] # Reference repeat match prediction: F [matched GTTCGTCATCGCTTAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 545684-545831 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB849558.1 Acinetobacter venetianus RAG-1 = CIP 110063 acLse-supercont1.3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 545684 28 100.0 32 ............................ AGAAACCCAAGCGTCGCCATAAACCTGAGCAT 545744 28 100.0 32 ............................ TTTAGAGCTAGGTCGAATCAAGACCATATTTA 545804 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 100.0 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : TTTGATGATGCAGTGCATTATCTTGAAGAAATGGAATTACATGCTAAAGCTGAGCTTGATTCTATCAAGCAACTGGATGACTTTTTGAAGAATATCGCAAGCCGTTATCCAGCCTTAAAGAACCCGATTGCACATGAAATCGCCGAGAAGATTGAAGAAAAGATGCAATTTCAGGATACCAGCGCAAGACTTGTTTATTGGGTTGTTTCTGAGGCTGGGAAAGTAATCGTTCAACCAATGTCTACTCATCATGCACCGGTCGATATTGTCAGATTGAGTGATGACTTTAGTAAGATGCACGACTATTTAACGGGTAGTGGAATTCTTGAGCGGGCAAGACATTTGAGCAAACTAGAGTTGCGTACTTTACCTTAAGTTTAGCTGTAAAAATTTAAGATAAATAATTCAGTGATTTGTGAAATATCTATAAAACTAAAGGTAGCATAACAAAAGTTATGCTACCTTAATGAAACTAGATTGATTGTTGTTTGATTTCTATA # Right flank : AAAAAGATTTCACTGAGCGCAATTTTGCGCTTTGCTTTGAAATCAGTGAGTTACAGAATGGAAAGCCTAGAAAATTTTATCGAATGACTAAAGATGGCTTGATGTTTTTAGTGATGGGCTTTACAGGCGAAAAGGCTGATGCAATCAAAGAACAATTTATCGAAGCCTTTAACTGGATGGCAACTCAACTTACACAAGTTTTCCAGTCAAAATGGGTGAGATACAATCAAGTTAGTCTTGAATATAAAACCAGAAAAGTTCATGTAAGTTGCTCTGCCCGTGATATGCGTAATTGACGAGATGAAAAGCCTATCTATGAGGGCGAAATGGCTCAGCTGGAAATAGGTTTATAGCCACAATTATTATAACGAGTTAAAAGCTCTCATTTTAAGAATCTTTTCATTTGGTCATTTCGGTAGTGTTAAAGTATTGTTTATGCGCTACAATCCGCAAAAAATTTATGTGGATTTTGCTGGATGGCAAAGAAATTTCCTGGTTTA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1136358-1138350 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB849558.1 Acinetobacter venetianus RAG-1 = CIP 110063 acLse-supercont1.3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1136358 28 100.0 32 ............................ AAAATAGTCCAGCAAGTAATTATTGGGCTTTA 1136418 28 100.0 32 ............................ TTTCCACACATCAACATCAAAAGCAGAACCAA 1136478 28 100.0 32 ............................ TAGTCAAGCAACCATGATTTGTACGGGTATAG 1136538 28 100.0 32 ............................ ATCATTGGTCATGATCATATGAGTATGAGGAA 1136598 28 100.0 32 ............................ GACGCTGATACATCTATAATTTCTATTACTAA 1136658 28 100.0 32 ............................ CGTAACAAGGTTTATTTAATTTAGCGCCTAAT 1136718 28 100.0 32 ............................ TAATACAATCACCTCGGCGAACAGTATTATCC 1136778 28 100.0 32 ............................ AATATAGGACGAACAAATATTTGCCCATTAAC 1136838 28 100.0 32 ............................ TAACGCTTGGTCAATCTCGTGTCGGCGTGGAT 1136898 28 100.0 32 ............................ AAGTGGTTATGTCTCTGGTCAAGTAAACAATA 1136958 28 100.0 32 ............................ ATCTAAATCTATATATTGTGATTCTTGTAAAT 1137018 28 100.0 32 ............................ ATGTGCGCAAATACGGTAAGGAGGATCATCAA 1137078 28 100.0 32 ............................ CAAAAAATGAACAGGGCGTTTCTAACCAAATG 1137138 28 100.0 32 ............................ ACATTAGGAAATCGGGTATGAGATCAATGGTT 1137198 28 100.0 32 ............................ GTAATTTCTCAAAATATCAGTGATAGAGGATT 1137258 28 100.0 32 ............................ TTAACCTTTGCACTTAAAGAAGTGCAATAAAT 1137318 28 96.4 32 ........C................... GTCAAGATTCATATGAACAGAACGAGAAGCCA 1137378 28 100.0 32 ............................ AAAAAAGGAAAAACGAAAAGAATTATAAATAA 1137438 28 100.0 32 ............................ ATCTTCATCAAGAACATCAATGTTCATATTTT 1137498 28 100.0 32 ............................ TAATAGAGATCCAATCGCTGCGCCTGTTACAC 1137558 28 100.0 32 ............................ ATGACCCATCCAACGCCTTCAATTAGTGCTGA 1137618 28 100.0 32 ............................ TGCAACTACGGCACCAGTTTGTGCGGCCTGAC 1137678 28 100.0 32 ............................ AACATTTAAGTGCGGTAATAAAATTCGAGATG 1137738 28 100.0 32 ............................ GTTCTGACGATGGAAAATCAGTTGATTACAGC 1137798 28 100.0 32 ............................ ATATTAGGATCAATCGCAAGTGGCTTTACTTT 1137858 28 100.0 32 ............................ TACAGTAGCCAAAGTTGATGGTATTCCTGTAA 1137918 28 100.0 32 ............................ TTCACGATACATAGCGGCAGATAGATCGTAAG 1137978 28 100.0 32 ............................ ATGACCCATCCAACGCCTTCAATTAGTGCTGA 1138038 28 100.0 17 ............................ TNNNNNNNNNNTGCTGA Deletion [1138083] 1138083 28 100.0 32 ............................ TGCAGGAACAGTTCCCGCTTGTTGAGTAATCA 1138143 28 100.0 32 ............................ AGCATCCGACATCCATTATTATCAGCTCTAAA 1138203 28 100.0 32 ............................ ATACACTATTCTAGGTGAATTAATTTAATTTA 1138263 28 100.0 32 ............................ TTTTACAGTATTAATTAATGCGATATGATAAC 1138323 28 82.1 0 ......................C.TCTG | ========== ====== ====== ====== ============================ ================================ ================== 34 28 99.4 32 GTTTGTCATCGTTTAGATGATTTAGAAA # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTTGTCATCGTTTAGATGATTTAGAAATATACAGATGAACCCACAATCATTTTCTAATT # Right flank : GACTTGTCTAATATCAAATGTTTTAGCTAAGTACTTTTAAAACAAATAGTTAGCTTTTAGCAATATTATTAAGAAACTCTGGCTCTAGCATAAAAAAATCTTTCCCAAAATTTTCTAAAGGAATTTCCGAAACATTAATTTGATATTCAATATCACCATTTAAAAAACTTTGTGATTTCTGTATCGAACGCTCCCAACCAAATTCCTTTCCGCATTGCATCAGTAAATACTGATAAACCTTTACATCATTAATTTTTAATAAGAATGTGTTATCAGATAACTGGTGAATCGAGACATTTTCAGAATATTGCACATCAATCATGATCTACCCCCTAGAATGAATAATAAATGATCAATATTTATCATTGTAGATAATTGATGTGATTTCAATTAATTTTTCATAATTATTAATAAGTTAAACCACATTTAAAACATAAATAACCACACAAGTCTCGATATGGCAAAAAATGTCACACTTTTGATTATTAATAATCGCTTAG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTCATCGTTTAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: F [matched GTTTGTCATCGTTTAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //