Array 1 4868-6936 **** Predicted by CRISPRDetect 2.4 *** >NZ_ORYB01000265.1 Xanthomonas fragariae strain CFBP 4786 isolate CFBP 4786, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4868 28 100.0 32 ............................ AGACGGTACAACTGCATACGCTAGAGGTATAG 4928 28 100.0 33 ............................ GTCATCGTGACAACCGAATACCGTGGTGTCTTC 4989 28 100.0 32 ............................ TTACGGTCATGTCCTGGATATGGTGTCCAGGA 5049 28 100.0 32 ............................ TTTCAGATCCCTCGCCTGGGTGGCCTACTCGT 5109 28 100.0 32 ............................ GTCCATGCGGCCGGCAGCCAACAGGCTGCGAA 5169 28 100.0 32 ............................ TATGTCGCTGAGGGGTGATCCATACCTAACCC 5229 28 100.0 32 ............................ CTGGCTGCAACCGCTACTCCGTAATAACTAGG 5289 28 100.0 32 ............................ ACCAGGTCCCGGCCCTTCTGGGAGTTCACTGC 5349 28 100.0 32 ............................ AATGAGCAATAACTTTTGCGCTAGTGTTCATC 5409 28 100.0 32 ............................ ACATTATCTTTTCCGCGAATCAAAAGCTTAAT 5469 28 100.0 32 ............................ TTCCGGGGCAATCCCTTTACGCCTTCTTGGCC 5529 28 100.0 32 ............................ ACCAAACGAACTGGTCCAGGCTAGGATCCGTT 5589 28 100.0 32 ............................ TTCTGGGACCACACAACCTCGCCTGCGTGCAC 5649 28 100.0 32 ............................ GTTCAGGGCAGGCGAAAGGTCTCAGCGCTGCA 5709 28 100.0 32 ............................ GCATCGACCCAATGGCCGCCCTTGCCAGGCTC 5769 28 100.0 32 ............................ TGCAGATGCGCGCGACGAATATCGGACGTGTC 5829 28 100.0 32 ............................ AAACATGCGGGGATCAGCACGGCCATCGGTTC 5889 28 100.0 32 ............................ CGTAGCCGGGAACTCAGCCAACTGTGCTTGCA 5949 28 100.0 32 ............................ GATTTCACTGATTGATCTGGACACTGTGCAGC 6009 28 100.0 32 ............................ TCGAAGTAGGCATAAAGCACGTTGGGCAGCCG 6069 28 100.0 32 ............................ CAGACAAGCCAGACGCCGACCCACTGATAGTC 6129 28 100.0 32 ............................ CGTCGTTTCGCGTCGTCCACCGCAGCCAAGGT 6189 28 100.0 32 ............................ ACCTACGAGCCCCAGCCGTATGCAGAGGTTTC 6249 28 100.0 32 ............................ CATTAGGCTGCACAGTGTCCAGATCAATCAGT 6309 28 100.0 32 ............................ AGCCGCACCCTTGCAGACTGTACTCTCTGCAT 6369 28 100.0 32 ............................ TCCACGTCCTCTTGAACAACATGTTCAGGGAG 6429 28 100.0 32 ............................ TGCAGCAGGGGGAGGAACTTCCGTATCAAGAC 6489 28 100.0 32 ............................ TGTAGGAGCAGACGGGGACAATACGCAAGCAG 6549 28 100.0 32 ............................ TTTGCGCCACACCGAAACCGAATTCCGCGACA 6609 28 100.0 32 ............................ TAAGCAGCGCGTTAAGAATACATTCGTGACCT 6669 28 100.0 32 ............................ TAGATGCCCTGATTGCAGAAGTCAGGACCTCT 6729 28 100.0 32 ............................ TCTATGGGGAAATCATTTTCGAAAAGTACATC 6789 28 100.0 32 ............................ TCCCAGGGCAGTCGGTGTCGCACCTTGCTTCG 6849 28 100.0 32 ............................ TTAAACCAAAACTCATGCCAGTCGTAGCGACT 6909 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 35 28 100.0 32 GTTCACTGCCGCGTAGGCAGCTCAGAAA # Left flank : TTGCAGATGTTGATGGCGAGACCCTGGCTGCACGGGATGCTCGATCACCTGGCGGTATCGGCCATTCTCGCTGCCCCTGCCGACACCCAACATCGGCACGTCACCAGGGTGCAGGCCAAGAGCAGTCCCTCGCGCCTGCGCCGTCGTGCCATGCGCCGTCATGGGATCGATGCAGAGACAGCCGCCCAACGCATCCCGGATGCGGCAGCCGAACAGCTGCCACTGCCGTTCGTCGTACTGGGCAGCCGCAGCACGGGACAGGCGTCATTCCCGCTGTTCATCCGTCACGGCCCCCTGCTATCGGAGCCGACGAACGGCAGCTTCAACAGCTATGGCCTGAGCCAGGAAGCGACCGTGCCCTGGTTTTGACCCTTTTTCCCGGACAGAACAAAGGCTGCTTTAGAATCAACCACTTGGCAGGCACCTTGTTTCAAAGGGTGCCTGCCCTGTTTTGTCGGTATTTCTTTTATTTATCAATGGATTGATGAAGATCTGATCTT # Right flank : AATTCAAGGATGGCCATACGGGTTGGATTGACGTTTGATACGCCCAGGGTTTCCTAGACATCTCAAGGCCATGGAAAATGGTCAATTCGGAGGTGTCTATGAGCAGCAAGCGGTATACGGATGAATTCAAGATCGAGGCGGTCCGGCAAGTGACCGATCGTGGTTTCAAGGTGGCAGAAGTCGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 601-807 **** Predicted by CRISPRDetect 2.4 *** >NZ_ORYB01000282.1 Xanthomonas fragariae strain CFBP 4786 isolate CFBP 4786, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 601 28 92.9 32 .............T.C............ TTACCAAGCAGGTGCACCAGAACTGCCCGCGT 661 28 96.4 32 .............T.............. CATTTGATTTTAATGGACTCAACAAGCCTCTC 721 28 100.0 31 ............................ TATCGTCGCGCCACGCATAGCAGACCGGTGC 780 28 78.6 0 A..........TCT.......G..T... | ========== ====== ====== ====== ============================ ================================ ================== 4 28 92.0 32 GTTCACTGCCGCGCAGGCAGCTCAGAAA # Left flank : CAGCCGCGAACGAAACAACTCGTCGGCGGGTCTGTCTTCGGCAGCAGGACGGCGTGTACGCATGGGCGGAAATTGCAAGAAACCAGCCTTCAGCGTAGCGAACACTGGTAGTTCTGGCACGCCGGTGAAGACATCAAGGCCTTGCGGTCGTTGGGTGGTTGGGGTTTTTCAGGGGCGACTTTTTAGGATGTCGCGCTCCTCGGTCACTCGACGCAACTCTGCCTTCAGCCGCCGAACCTCGGCGCTCTGGTCCACCTCGGCGCGCTGCACCACGCCAGGCTTGCCGAACTTGCGCAGCCAGGCGTAGAGGCTGTGCGTGGTGAGACCCAGTCGCTCCGCGACTTCTGCCACCTTGAAACCACGATTGGTCACTTGCCGGACCGCCTCGATCTTGAATTCATCCGTATACCGCTTGCTGCTCATGGACACCTCCGAATTGACCATTTTCCATGGCCTTGAGATGTCTAGGAAACCCTGGGCGTATCATGTGTAGTAGTTAG # Right flank : ATGCGACCGGCCCGTCCACTCTCGCGCTGTATTTGCCACGACTGTCGCGTCTCATGGACAGGCGACCTGCAGTGCTCCATGCATCGGCATGTGCTGTTGAACAGGTGACGTTAACCGCGCGCGCATTGGAAAGGCATGTTTGCGCAGGCGTAGCAGTGTACGACGCGTGACGTCGTCGACGCCTTCAACAGACGTGCAACGCAGGGGAAAACCGGCGGAAGATGCACTGCGATAAAGCCACGCCGCGCGCATCACCCGCGCGTGCACTCACTTGCGCCAGTAAAACCCCAGGAACATCGCCACCGCCGATTCGGCCATCTGCGTCTGTTGCTCCGGCGACAGCGGCGGCTGGCCCGTGGCGAGCTGCGGCCAGAACGCGAAGCCCTGCACCAACGCCTGCAGCTGCTGCGCGGCGAAGTGCGGCTCCACGCTTGCGAGCCGCCCGTCGGCCAACGCAACGCGTCGCCAGGTGGTGGTTCCTTCCTCCTTGCTGCCCAACG # Questionable array : NO Score: 3.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGCAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCGCAGGCAGCTCAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //