Array 1 4480766-4480228 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021731.1 Azoarcus sp. DN11 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 4480765 37 100.0 34 ..................................... CGGGGCCGAGGGTTTCGTTCGCCGGGATCGACCA 4480694 37 100.0 35 ..................................... GCCAAGGGGACGCAGATGACCGCAGGGGTTGTCAT 4480622 37 100.0 35 ..................................... CATGACGCCAGATCGGAGGCGATCACGCGGCTGTC 4480550 37 100.0 35 ..................................... GATCAGGCCGGCATCACCAAGCGCATCACGGTGAC 4480478 37 100.0 35 ..................................... GTGGTCGATCCCGTGACCGGCGAGCAGATCATCTC 4480406 37 100.0 34 ..................................... CTTCTGCCGGGCACGTCCCGCTGTCGAAAGTGCT 4480335 37 100.0 34 ..................................... AACGTGGCGGCGCATGGCGCGCTCGTGTCCGCAA 4480264 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =================================== ================== 8 37 100.0 35 GCTTCTACGAAGCCCGACCATGCAGGTCGGGAACGCC # Left flank : ATTACCGCAAACGCCTTTCCGGCCCCGAGATCCGATTCCTGCGCGTCGAGATGGGAATGGCGCAGAAGCGACTCGCCGATGCGCTGGGCGTGGACGAGCAAACGGTTTCGCTGTGGGAGCGCAGCCGTCGCCGCCCGAGCGTGGCCGCTGAACGCATGTTGCGCCTGCTCTATCTTGAACACGCGGACGGCACGACGAAGCTGGCGGAATTGATCGAGCAGTGGAACGAGACCGACCGCCAGGAAGGCGAGGATCAGTCCATGACCGCGCAGCGGGATCAAGAGAAGTGGCGTATCGCCGCCTGACGGACATGCGCCAGTCGCGCCTGCGATGCCATCATGGGGCGGCAGATTCGTACCATCATGCAGGCTTTCGGTGGGCACTTGGCATGCAATGCCGAGGCGAAGGTGAAGTCGTGCCGTGGCGCGGTTTCGGTGTGCGTGATCGAACACGTCATATCGGTTGATCCGTCACCGGGAAAATTTCGCAGTTAGCCTCTC # Right flank : TCCGATACTCCAAAGGCTTGAATTCTCGGCACAAGAACCTGCCTGAGCGGGAACCCGCATTGCCAGGCGTCCGCAAAGCCGTGGCCGATCGAGAAATCGGCTGTAAGTGGTTGATTTCAATCCAGCGCGAACCTCACCGCATTTCACCGTCGCTTCAGGTTCGCGCCGCACGCCGTCCTGCTCTCATTGCGCCGTACTTGCCGAGTGCGACTCGCGGAGCGGCGTACTCGCGGAACCCGCGCAAGGGCCAGTCGAGAGACGGGTAACTTACTGCCGCGATCAGCCCGCGCACGGCGTCCAGTGGTAACGGACGGTCCCATGCGAGCCAGTGGTATTCGTCGCCCTGCCAGCCGGGCGTCTGTGCGCGACCGTTCGGAGACCTCGTGACCGGGTGTAGTGGAAATGCCTCGACGGCAAGCCAGACGCGGGCCGGATGCCTTGTGCTGGATTCCGACGAGGAGGCGATTTGAAGTGGCGTCGATTGCGCCATGTTCGACTGT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCTACGAAGCCCGACCATGCAGGTCGGGAACGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-13.80,-14.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 4538049-4542300 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021731.1 Azoarcus sp. DN11 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4538049 29 100.0 32 ............................. GACGTAGACGAAGCGGCGCGTCGCGCGCTTCT 4538110 29 100.0 32 ............................. AGTTCGAGGTTTCGTCCCACAGAGGAAACTCC 4538171 29 100.0 32 ............................. GGGCCGTGCGTTTTGGTGAGCCGGCCGTAGGG 4538232 29 100.0 32 ............................. TGACGAACTTCGAAAAGCGCGAGAGCTGGTCT 4538293 29 100.0 32 ............................. ACATGGCAATCAATTACGCAAAATTCTTCTCC 4538354 29 100.0 32 ............................. AGCTTCGGCCTGCCGGACAGCGTCGTGCATCA 4538415 29 100.0 32 ............................. CCCGTAAGCCAGCAGGAAAAACGGCTTCAGCA 4538476 29 100.0 32 ............................. GCGCCGAACTCTCGCCCCTTGCGCTTCGGGCA 4538537 29 100.0 32 ............................. GTCGTGTGGCTCGTTTGGGGCAATAAAGGGGG 4538598 29 100.0 32 ............................. GTCGAGCGGTCGCCACCGGTCAAGGTCGAGCC 4538659 29 100.0 32 ............................. AACTCGTCGTGCGTGTGGCGCGCGAATCGACC 4538720 29 100.0 32 ............................. CGCTGCTGCCAGATCGGCAGCAGGTATTCGTA 4538781 29 100.0 32 ............................. GTCCGCGAGGCCGCCGTCGCAGCCGTTCGCAA 4538842 29 100.0 32 ............................. GGCATGGGCTGGAGCCCGGATGGTGCGCGGGA 4538903 29 100.0 32 ............................. ACAACCATTCGAACACACCACACGCGGCAACG 4538964 29 100.0 32 ............................. GTGGCGTTCGGCGCGGCGGCGGTGTCGGTTTT 4539025 29 100.0 32 ............................. ATGGCCCCGGAGGAGCTATGCCGGCATGTGAA 4539086 29 100.0 32 ............................. ATCGGTTCCGCGCTCGGCCAGACCTTCAAGGG 4539147 29 100.0 32 ............................. GCGGCGTTCTTCGGGCCGCGCCGCGCGACCTT 4539208 29 100.0 32 ............................. TCCGGCGGCGCCCTCGCGTCGGCCAGCAAGGA 4539269 29 100.0 32 ............................. CACTACCTCACCCAGGCCCCGCGCCTGAGCCC 4539330 29 100.0 32 ............................. CGTGTGGGACGTGGATCCGCTCCAAGTCACCC 4539391 29 100.0 33 ............................. GCCCCGGCTACAGCCTCGAAGACCGCGCGCCCC 4539453 29 96.6 32 .............A............... GCGAGGCGTTCCGCCTCAGCGGGCGTGAGACG 4539514 29 100.0 32 ............................. AAATCCGACAGATGGAGAAAGCAGCATGAAGC 4539575 29 100.0 32 ............................. CGCGACGGGCGGCCACCCGCTCCCGCGCCGCC 4539636 29 100.0 32 ............................. GCTGATTGCTCATTGCCGGGCTCCACTCTCAA 4539697 29 100.0 32 ............................. GCGGCCTGGGCGGCGGTGCGCGATGCGCGTCA 4539758 29 100.0 32 ............................. CGCTACCACGACGAGGTGATGGCCTGGATGCG 4539819 29 100.0 33 ............................. TTAGACCGGGGCGTGCGGCCCCTGTCCCGTCCT 4539881 29 100.0 32 ............................. ACCACATCCAAGACTCGCCGCGCCGATCTCTT 4539942 29 100.0 32 ............................. GGCTCAACAACATCAACAGCCAGATGGCTGCG 4540003 29 100.0 32 ............................. GCATCGGTGATGCTGCCGCCGTTGAGCGTGAC 4540064 29 100.0 32 ............................. CTGGTCGAGTCCGGGGTTGAGGTCTCGGGCAC 4540125 29 100.0 32 ............................. CCTCTCGCACCCGCTGCACGAAGGCGCGCATA 4540186 29 100.0 33 ............................. ACCCTCGGAATGAGCCCCCGCGCCCAGTCAATC 4540248 29 100.0 32 ............................. GTCTTGTTCGTCATGAACACCCTCCCGGATGG 4540309 29 100.0 32 ............................. GCTGCGACGAAGATATCGCGTGGCGGTGCATT 4540370 29 100.0 32 ............................. CGGTTTGCCCGTCACGATTTCGCCCGCCTCGA 4540431 29 100.0 32 ............................. ACCTCCACGGAATGCACTGGTGCGACGTGCAC 4540492 29 100.0 32 ............................. CATCGAGGATGCTGGTGCGCGCAGCAACTTCG 4540553 29 100.0 32 ............................. CTTTTGCCGTTGCCCTTGCGCCCGGTAACGAG 4540614 29 100.0 32 ............................. TTTCTTCCAGCCCCCCAACTGTTGCAGCGCGT 4540675 29 100.0 32 ............................. TTGTCGACGATGAGTTCCTGCTGCAGGTCGAG 4540736 29 100.0 33 ............................. GCCGAGGACGAGGCTGGTATCGATGCCCTTCTC 4540798 29 100.0 32 ............................. TCGTCGTTCCACCGATCTGATAGACCTCGACG 4540859 29 100.0 32 ............................. GAATAGGACCTGTCGCGACACTGAGCGGATGC 4540920 29 100.0 32 ............................. ATGCGGAGCAACCTCACACCCACGTTGTTGCC 4540981 29 100.0 32 ............................. TGGCAGGCGTGGCAGCCGGCGGCGAAGATGTC 4541042 29 100.0 32 ............................. CTAAATTTCCGAGCGAAAAAAAGCCCGCTCAG 4541103 29 96.6 32 ............................T TGCCCGAGATGTACGGGATCTCGATCTCGCCT 4541164 29 100.0 32 ............................. AAGAGGGGGTGAGCATGAAAGACGCATGCCGG 4541225 29 100.0 33 ............................. TTCTTCGAGTGGCTGGCGACATGGGCGGTCATC 4541287 29 100.0 32 ............................. ACTCCTGCACAACGCTGCTTTGCCGTGGGCTC 4541348 29 100.0 32 ............................. TATCAATGCGCGACTGAGCCACAATCGCCGCC 4541409 29 100.0 32 ............................. CCGACTGCGGTTTTACCCGATAGTTCTCTTCC 4541470 29 96.6 32 .T........................... AACTCGTCGTCGCTCGCGCAATTGCCCATGTC 4541531 29 100.0 32 ............................. AGATCCGGCCCGAGCTGATCGAGGATGCGCAA 4541592 29 100.0 32 ............................. ACTATTTTCAATCAGGCCGGCATAGGATCGAA 4541653 29 100.0 33 ............................. CTCATCCGCAATTTGGGTTTTGCTGCCCGCGTC 4541715 29 100.0 33 ............................. GATTCAACAGTTACTGGCGGGACGAGCCGGTCA 4541777 29 100.0 32 ............................. GCGGGCTGATCATCTGGTGTGGTGCGTAACTA 4541838 29 100.0 32 ............................. CCAAATCTTGGTGTTCCCTCTAGTGCAGCGCG 4541899 29 100.0 32 ............................. CCAATCGGCCACGGCTTGCCGGCGGTCGGGTC 4541960 29 100.0 32 ............................. GCGCCGTGGGGTTGATCGGAGCGACCGGAGAA 4542021 29 100.0 32 ............................. AGCCCGCGAGGTAGGCCGCTGGATCGCGAAGC 4542082 29 100.0 33 ............................. CAGTTCTACTTTCCCGGCCAGCCGAGCCTCGCC 4542144 29 100.0 32 ............................. GGTACTTTTGGGAAACGTCCCATGATGGCGCT 4542205 29 100.0 33 ............................. CCTTGATCGTCATGGCCGGCGCGCTGCTCGCGC 4542267 29 86.2 0 T....................G.A...G. | GCG,TC [4542281,4542287] ========== ====== ====== ====== ============================= ================================= ================== 70 29 99.7 32 GCGTTCCCCACGGGCGTGGGGATGAACCG # Left flank : CTGGAACGCATCATCCCGGACATCGAGGAGATCCTCGCCGCCGGGGAAATCCCTCGTCCCGATCCCCCCGAAAACGCTGTCGGACCCGCCATCCCCAACCCGGAAAGCCTCGGCGATGCTGGTCATCGTGCTTGAAAACGCGCCGCCGCGCCTGCGCGGCCGGCTGGCCGTGTGGCTGCTGGAAATCCGCGCCGGCGTTTATGTCGGAAACTACTCGCGCAAAGTACGCGAACACATCTGGGCGCAAGTCGAAGACGGCATCGAGGACGGCAACGCCGTGATGGCTTGGCACACGAACAACGAAGCCGGCTTCGAATTCCAGACCCTCGGCGCCAACCGCCGCCTGCCGGCAGACTGGGACGGCGTACGGCTGGTAAGCTTTCATCCGGAAGCCGACAATCCCGATCTTTAACAACCCGAAAATTCGATCGGCATCGCAAATCGTTGGTAGAATTTTCCGCTTCGAAATTTCCATGTGAATTCATGGAGATGGAAGAAGT # Right flank : GAACGAATGTGACGAAGGTTCCCCGTACACTGGGGCGAACTCCCATCAGAGTACGATCATGGTCAACCACGTGCGATGATGCCTTCTCGAAGAATGCTCGCGCGAGTGTTACGCCCATGAATACCTTGGTAACTGCGTCACGACGCCACCGACTTCGTGAATGTCAGCCTCGGTGGGGCGCAGTCGGTGCGGTGGCTCTGACGCTTATGTCGCCCGGCCCCGCACAGGCGCAGCAGATGCCAGTCATCGCCGTCGACGTTGGCCACACCCTCGCCGCCCCCGGCGCCATCAGCGCGCGCGGCCGCACCGAATTCGCGTTCAACCGTGAGCTGGCCGGGCGCGTCGTTGAGGCGCTCGAACGCCTCGGTCTGCGCGCCGAACTGATCAACGCCGACGGGCGCATCGAATCGTTGCAGGCCCGGCCGGCCCGCGCCGCCGACGCGGATTTCCTGATTTCGATCCACCACGACTCGGTCAGCGGGCGCTACCTCACGCCGTGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCACGGGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCGTTCCCCACGGGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //