Array 1 36817-38104 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLPV01000015.1 Pseudomonas aeruginosa strain WH-SGI-V-07489 WH-SGI-V-07489_contig22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 36817 28 100.0 32 ............................ AGCGGCATATCCGTTACCACGTAACCGATATC 36877 28 100.0 32 ............................ ATCTAGCGTCATACCCCAACTCGGTAAGGTCA 36937 28 100.0 32 ............................ TGTCAGAAGGGATTACCGCGGACCTGGTCGCA 36997 28 100.0 32 ............................ TCAGGCTCATTTCGTTGTCCTCGATGCCCCGG 37057 28 100.0 32 ............................ GGGAGGGCATGTGATGCGAGCAGACGAGTACC 37117 28 100.0 32 ............................ GGGCCCGACGGCTAGTAATTCGCGGAGGATGG 37177 28 100.0 32 ............................ TGTCCGCAGCAGGCCGGTAATCCGGATAACTG 37237 28 100.0 32 ............................ TGTCCGACAACCCGCATAGCATCCCTGAGCAA 37297 28 100.0 32 ............................ AAGGACTCTGATCTCTTGACTCACCATTTCCT 37357 28 100.0 32 ............................ CGCTGCCATCCGGCGCATTTCCCTCTCATAGC 37417 28 100.0 32 ............................ AACATCCAGCCCGAGCTGAGCGATATCCCCCG 37477 28 100.0 32 ............................ TGCTCGCTGATGACCAGCCGCAGCGCATGGTT 37537 28 96.4 32 .......................G.... CGCAAAGCCCCGCAGGACAATGACTTGATATC 37597 28 100.0 32 ............................ AATCCGAGGCGGAGTTCAGCCACTTGGCATAG 37657 28 96.4 32 .....................C...... GCAGTGATCGAGCGCGCACGGTCGCGCAAGAC 37717 28 100.0 32 ............................ AGAAGCGCATCCAGCGATACGAAGATGCACTC 37777 28 100.0 32 ............................ AACCAGCGTGTCGATGCCGAAGCGAAGGCCCG 37837 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 37897 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 37957 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 38017 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 38077 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 22 28 98.4 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 48937-46629 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLPV01000015.1 Pseudomonas aeruginosa strain WH-SGI-V-07489 WH-SGI-V-07489_contig22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 48936 28 100.0 32 ............................ TGGGGCGAAACCCCTAGGCGCCGGGCTAGCTC 48876 28 100.0 32 ............................ TCCTCAAGTTTTGTCAGCCGAGCCAGCATTTC 48816 28 100.0 32 ............................ TCGATGCCCCGGCGAACCGGGGCGGGGTGGTT 48756 28 100.0 32 ............................ TGATTGCTGCGGCACCTGAACTGCTCTCCATT 48696 28 100.0 32 ............................ TACCCCTCATTAGCCCGGCAAGTCCGGGCATT 48636 28 100.0 32 ............................ ACTCTGCGCCTCGACGTCGGGATCTACGAAAA 48576 28 100.0 32 ............................ AAAATGAAACGGATCAGCTCGCCGACAATCTC 48516 28 100.0 32 ............................ TGGAGCGCTGCACCATTACCCGCGCAGCCCGA 48456 28 100.0 32 ............................ ACCCGAATGCATCACCAACCCACGGCGTGCCC 48396 28 100.0 32 ............................ CTCCAGAGCGGGTCCGACAATAGTCAAAACCC 48336 28 100.0 32 ............................ AGGACTCAGCGAGCCTTCACAAGACGCCTCCA 48276 28 100.0 32 ............................ ATCGAGCAGTGCATCGCCGTCTACAACCAGCT 48216 28 100.0 32 ............................ TGATCGACATCAGGAACGCCCACAGAGGCCGC 48156 28 100.0 32 ............................ ATCACGCCCCAGCCACTTTTCAACCCCGCACT 48096 28 100.0 32 ............................ GGTGTGTGCGGCCAGCTCGGACCCGAACTTGA 48036 28 100.0 32 ............................ AGTCACAGCCGCCGCAGCAGCCAGACCGCCCG 47976 28 100.0 32 ............................ TTAGCGAGTCACCGGGACAAAGGTGACCACGG 47916 28 100.0 32 ............................ TGTCCGAACTCCCATCTGTTGCCCTGATCAAC 47856 28 100.0 32 ............................ AGAAACTGCGGAACCGGAAGTGCATTGATCAA 47796 28 100.0 32 ............................ AAGTTCGTGACTGAGCACCGGCACCTGGGCAT 47736 28 100.0 32 ............................ ATCACGTGTGATTTTCGATGAACGTGATTTTT 47676 28 100.0 32 ............................ GGAACGAAGCGGGTGCGACACGTCGCAACTGC 47616 28 100.0 32 ............................ AGACCATCACACCGGTGACGCTGCACATCGTC 47556 28 100.0 32 ............................ GCATAAAAGTGCCAACGTCGACTTTGTAGCGT 47496 28 100.0 32 ............................ AGGAGGTTCTGGTCCGTCGCCCAGTTCCCGGT 47436 28 100.0 32 ............................ TCGCCCGTCACGGAGCCCGCCGCCTTGGTCAC 47376 28 100.0 32 ............................ AGAATGGACTGCCGAGCGCCGGCCGCCAGTTG 47316 28 100.0 32 ............................ CGGCATTGCTGAATGCCATAGCGGATCTGCTC 47256 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 47196 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 47136 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 47076 28 100.0 32 ............................ GATACCTGACGGCCTGGTGCTGGATCACCTGT 47016 28 100.0 32 ............................ TGTCCTTTCAACTCGGTCTGCTCGTAGAGGTT 46956 28 100.0 32 ............................ TTGAGAAGCCGCGGGTGTCTAAGAAACTGGTA 46896 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 46836 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 46776 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 46716 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 46656 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================ ================== 39 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //