Array 1 279088-280641 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHVMR010000002.1 Shigella sonnei strain HECS8 NODE_2_length_391820_cov_91.1905, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 279088 29 100.0 32 ............................. GATACGCTTCATCGCCCGACGTGGGGAGCATA 279149 29 100.0 32 ............................. ATATTGTCAGAAACTGGCTGGAGCATGGTGAC 279210 29 100.0 32 ............................. GTGGCTGAACTTCCGATGCGATGAATGTTATT 279271 29 100.0 32 ............................. GCGAATGCCCCATCTGTAAACGCCGGGGAAAA 279332 29 100.0 32 ............................. GGTTGCCATCGCTGACGCAACGTCATTAAGGC 279393 29 100.0 32 ............................. GGAATAATTACCGCGCTGATTAAATTAATTAA 279454 29 100.0 32 ............................. GCGGCAGCGCCCGCCGGGTACGACGGCAGCAC 279515 29 100.0 32 ............................. CGCTTTTGCTCAGTAGTGAGTGTGATTTCATC 279576 29 100.0 32 ............................. CAGGTACAGCCGTTTCGGTGTTTTGTTTTTGT 279637 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 279698 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 279759 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 279820 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 279881 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 279942 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 280003 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 280064 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 280125 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 280186 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 280247 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 280308 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 280369 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 280430 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 280491 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 280552 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 280613 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 296143-297146 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHVMR010000002.1 Shigella sonnei strain HECS8 NODE_2_length_391820_cov_91.1905, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 296143 29 100.0 32 ............................. CCCCTTGACCTTAACGCCGCGTTTAGCGTCAC 296204 29 100.0 32 ............................. GGTATTTTCAGCAGATTAACCACCGCGATCGC 296265 29 100.0 32 ............................. ATTACATCCGGCAATATCATGCTGATGCCTCG 296326 29 100.0 32 ............................. GGCGGGCCGTTGGCTAAACGCTGCGATCTGCC 296387 29 100.0 32 ............................. GGACGCCCAGGAAAAGGACATTGCAGCGTCAT 296448 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 296509 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAATCGTTATCCCC 296570 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 296631 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 296692 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 296753 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 296814 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 296874 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 296935 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 296996 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 297057 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 297118 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //