Array 1 1718856-1717819 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP017542.1 Mannheimia haemolytica strain 1405 chromosome, complete genome		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                      	Insertion/Deletion
==========	======	======	======	================================	=====================================	==================
   1718855	    32	  93.8	    36	C....................C..........	CCTATAACGAGCAATGGCATTTTGATCTACGGTAAA 	
   1718787	    32	  93.8	    34	C....................C..........	TTCTTGAATACCTCCGGAGTCAGTTAAGATAAGG   	
   1718721	    32	  93.8	    36	C....................C..........	CACCGCTGCTACTTCGGTTATCGGAGTAGTTTGCAC 	
   1718653	    32	  93.8	    35	C....................C..........	GTGGCACAGTAACACGAGCAGATGCTGATAAACGC  	
   1718586	    32	  93.8	    34	C....................C..........	CAGCAGCCGTTGTTACCGTGGTGCAATGCTTGCG   	
   1718520	    32	  93.8	    36	C....................C..........	TACACTTATTGCCATAGGGTAGTAGTAATCTTTTAC 	
   1718452	    32	  93.8	    34	C....................C..........	TGCGATTTTTGGATTTTTCGGGCGATAAATGATA   	
   1718386	    32	  96.9	    34	C...............................	TCGTGGCTGGTTATACAAAGAAAAGCATTGTTGG   	
   1718320	    32	 100.0	    35	................................	TTAAATCTAAAGCTAAAGCTATTTTATTAATTAAA  	
   1718253	    32	 100.0	    34	................................	TTTACCGTTTACCGATTGGATTTTAATGCTAGAG   	
   1718187	    32	 100.0	    35	................................	CCTAAATTGCCGTAAAAATCTGCCATTAGCTACGC  	
   1718120	    32	 100.0	    35	................................	CTCATAACGAATCCAATCCTGTTCGGTTAATCCCC  	
   1718053	    32	 100.0	    37	................................	AGGGGCGTGTACCGCAATCAATTTTAATTATAACCAA	
   1717984	    32	 100.0	    35	................................	TTTATCTGTTGCGGTCAATTGTATATCTTGAATTT  	
   1717917	    32	 100.0	    35	................................	CTCGTCTTGAATTGGAAAATCAAGGGCGACAATAG  	
   1717850	    32	  93.8	     0	..........T............T........	|                                    	
==========	======	======	======	================================	=====================================	==================
        16	    32	  96.7	    35	GCAGCCACCTACGCGTGGCTGTGAATTGAAAC	                                     	       

# Left flank :   TGAGGAATTAGCAACTATGCTGATGTTGATTACCTACGACATTTCATTTGATGACCCCGAAGGGCAGGCTCGCCTACGCCGTATTGCTAAGCATTGTTTGGATTATGGTGTGCGGGCGCAATATTCTGTGTTTGAGTGTGATGTTACTCCTGCTCAGTGGGTAACATTGAAAAATAAATTATTGGCAACTTACAACCCAGACTGTGATAGTTTGCGCTTTTACCATTTAGGCAGTAAATGGAGGAATAAAGTTGAGCACCATGGCGCAAAACCTTCAGTGGATATTTTTAAAGATACGCTGATTTTATAAATCGCTAGCCTGTAGTTCTCATAAAAATGTAGCAAGGTTAGCGAATCTATATTGTTCTTTAATAATCAAGGAATTAGAAAAAATAAGGCACAATATATTGGCGATATGCTATACTTTATCCACTCTCTACAAAACGTTAGCGAATAAAGGGCTAAAAAGCCTGATATTTCAATACGTTATCTTATAGGGA
# Right flank :  GGTGTACCCACAAATCCTATGTTTTCGCCATTGGCTGCTACCTTCGCATCAATATATATTGAAATATCAATGGCAAATTTGTATGTTGTTAATTAGACTGATTGCATCTGCTATGTATCATAGTAATGACGAAAATATTCTATTTTGCAAAAAATAATCAGAAATTACCCGCTTGTTCGAACTGAGTTTTTGTTTTCTAAGATGTGAAATGATACACTTTAGATAGTTTTAAAATATAGAGACAGTAAGATGAGTAGTACGGAATTATTAGTGAATGTTACCCCAAGCGAAACAAGGGTAGCGTTGGTAGAAAACGGAATATTGAAAGAATTACATATTGAGCGGGAAGCTAAACGCGGGATTGTTGGTAATATTTATAAGGGAAGGGTGACAAGGGTATTACCAGGTATGCAATCTGCTTTTGTGGATATCGGCTTGGAGAAGGCTGCTTTTTTGCACGCTTCTGACATCGTTTCGCATACGGAATGTGTTGATGAAAA

# Questionable array : NO	 Score: 8.79
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GCAGCCACCTACGCGTGGCTGTGAATTGAAAC
# Alternate repeat :   CAGCCACCTACGCGTGGCTGCGAATTGAAAC

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         R Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     R [6,8] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GCAGCCACCTCCGCGTGGCTGTGAGTTGAAAC with 94% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-1.30,-1.10] Score: 0/0.37
# 	Array degeneracy analysis prediction:      R [2-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,9.78   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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