Array 1 54910-55569 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHOCY010000029.1 Parabacteroides distasonis strain MSK.22.22 NODE_29_length_62276_cov_145.396, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 54910 47 91.5 30 A......C.......................GA.............. TTCTCTGCGTTTTGGTTCAATGCGATTGCA 54987 47 100.0 30 ............................................... TGGGTCGTAGGGTCTCCTGATGGCACGTAT 55064 47 100.0 30 ............................................... CGGCATCATACTGGCTAAGGTAAAGCTCCT 55141 47 100.0 30 ............................................... CTTTCTTCAGCGTGTATGAGTTTACGGAGT 55218 47 100.0 30 ............................................... TCACGCTTGCGGAGCGAGTATGCAATATTA 55295 47 100.0 29 ............................................... CATCCATAAGGATATCAATGTCATGTCCC 55371 47 100.0 29 ............................................... AGGTGAGTAACTCGAATTACAATATCGCT 55447 47 100.0 29 ............................................... TTTTAGAATGAGTTAGGTAATATGTGATG 55523 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 9 47 99.1 30 GTTGTGATTTGCTTTCATTTTAGTAACTTTGAGCCATTGGAAACAGC # Left flank : TCTAAACGCTTGGAGAATCGATTATTTCGAGGCAAGGTACGACTTGCTTCCAAATTCGAAAATATTTTTTCACAATAATCTATTGAACAACGCATTACAAATTTTCACTGATTTATTCTAGCGAAAGATTTCGTCTTCTGTCAACCTCAGTCGGACAAACAAGCGACTTTTTATCTGAAAACAATAAGCTTTTCATCCGAAAACAATCGGATTTCCGGTCGGAAACAATAAGGATCGCAGTCGAAAACAGCATACAACGCCGTTATAAACACCTTACTATTGGATCATAATCCCTCTACAAAGCCTATTCATACACTAAAAAATGGCGAAATACGCTGTTTCCGCCTTCCTTTTCTCTCTATTTTCGCATTTCCATAAAAAGCCTTTATCAGCTAAAAGTCTCCATTTTGAGCAAAATGACAGAAAAAGAGATATTTTGATGACATAAAAGAGAATGGCTTACTTTTTGGTGTAGCTGCCCCAATATTTTGCAATATTTT # Right flank : CATATTATCTATTAAAAACTATTAATCAATGGATTACAAAGCACATCAGAATAAAAAAAACAGATATTGTTTCCATTAAAAATCCCGCTTGACAGCGGGATTTTTCTTTTAGAACAACTCCAATTGCTGTCCAGGAGTATTCACTTCCACCGTTTTCTTTCCATAAAAAAGTTCAATATTCCCAAACTGCTTATCCGTAATACACATGATTCCGACATTCCCATGCTCCGGAAGAAAAGATTTAACTCTTTTTACATGTACGGCCGCATTCTCGCTACTAGCACAATGGCGGACATAAATAGAAAACTGAAACATCGTAAATCCATCTCTTTGTAGATTTTTCCTGAAATCCACATACGCCTTTTTCTCCTTCTTCGTCTCGGTAGGCAAATCAAACAACACAAGTACCCACATAACACGATATTCGCTAAACCGATCCATATTACATTTCCGGATAGGAGATTCTACGCAATTCGCCACTAAAGCACTTATACAGAGAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCATTTTAGTAACTTTGAGCCATTGGAAACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.83%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.10,-0.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.68 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 172359-177639 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHOCY010000002.1 Parabacteroides distasonis strain MSK.22.22 NODE_2_length_297029_cov_133.071, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 172359 33 97.0 32 ................................T TTCAACGCCTTTTCTTGGTTCCGCTTTGCCAA 172424 33 97.0 34 ................................G ATAAGGCATTGTTGCAAATCGTAATAAACCATTT 172491 33 97.0 33 ................................T GAAAATGCGGTTGTTTTATGACAACGCCGCCGC 172557 33 100.0 34 ................................. ACTCCAATATTTTTTGCAACCGTGCCTTTTCTTG 172624 33 100.0 32 ................................. TTCCGAACCCGGACAATTTGCCGGAAATAGAC 172689 33 100.0 34 ................................. TGGTATAACAACCGAACGGGCAATTGCCGAGGGC 172756 33 100.0 32 ................................. AAACGTGGGTTGAAAAATCCGATTACGGCACG 172821 33 97.0 36 ................................T TTTCCATGTAGTTAATCAACCAAAGAAAAACAACGC 172890 33 97.0 36 ................................C AAAACCCGGAACAAAGGGACGATTGGGAGTATTACC 172959 33 97.0 34 ................................G GCAAAAAGGGTTATGAAAATAGCATTGCCGACAA 173026 33 97.0 33 ................................T AAATAACAAATTATATAACACTTATTTTTAATA 173092 33 97.0 32 ................................C TCATCCGCGCTCTCTTGCAATCCGGATGCCAT 173157 33 97.0 32 ................................G AGTTGGCGGCGAAATAAACCTCAGCCCCATCC 173222 33 100.0 35 ................................. AAAAAGAAGATAGACGAATTTGAATCCTTCTTGTT 173290 33 97.0 35 ................................T TGAGCACGATGATGCAATATTAAAAGTGACGGGCA 173358 33 100.0 36 ................................. CGTAACCGTGGCGGCTTGTTCGGCGGTGGCTGGGGA 173427 33 100.0 34 ................................. TTCTAGTGCTCAAAGATACGGTACATTTATCGAT 173494 33 100.0 34 ................................. TCATCTTCGTATTGAAATCACGCTGTGCGCCGAT 173561 33 97.0 33 ................................T CCGGGGGCAACTCGATAAATGGAGTGTATGGTA 173627 33 97.0 33 ................................G TTCCCCCAAAACAGAAATATACAATATTATCGC 173693 33 97.0 32 ................................G TGTTAAATGATGCTTATCCAATCTATAGCGTG 173758 33 100.0 32 ................................. CCCTATCAATTTGAATATTATAATGGAATTGA 173823 33 100.0 32 ................................. CTGTTTGTGTTAGTATAAAATATTGCCATATC 173888 33 97.0 33 ................................C GGCGATAGTACCACCGCCGCCGCCGTCAATGAT 173954 33 97.0 32 ................................T AGCTTGTTCTTTAGACTTTCGTTTTCCGCTTT 174019 33 97.0 33 ................................T GACAGGTTGGAGGCTATCAGGCAAAGATACGGG 174085 33 97.0 36 ................................C ACGCTAGCGGAGAATATAACGGATAAGATAACTGGT 174154 33 97.0 34 ................................T CCAAAGGAGAATGAGACCCCATTGGACTATGCCG 174221 33 97.0 32 ................................T CCAAGGTGTTAGGAATGTACTTTCTTATACCG 174286 33 97.0 33 ................................C GATGTCAATCGGGGCCATGGCCGCTACAATGGC 174352 33 97.0 33 ................................C ATCTTTTTGCTCGCCGTCCGTATATCGCCCGGA 174418 33 100.0 33 ................................. TGAATACTTGGGTAGGAGACGCTATACAGAAAC 174484 33 97.0 32 ................................T CGGAAACGAATACCACTATCCGGCCTTATCTC 174549 33 100.0 34 ................................. TATCTTAAAATTAATCTTTACATTTGCGATCAGA 174616 33 100.0 34 ................................. AGACGTTAGGAAAGGAAAAGGCGCAAGAGGCTAT 174683 33 100.0 33 ................................. TTTACAGGCTCGAAAAACATACCGAATTTTTTA 174749 33 97.0 35 ................................C AAAGATCGGTGAAATCCTTGCCATTGTATCTGTTT 174817 33 97.0 32 ................................T GATGCGGATAGAGATATTTATTATATCCGTAA 174882 33 97.0 32 ................................C TTTTTCTTTACATGCCCTTTATTTTTAAGCCT 174947 33 97.0 32 ................................C GTCCTTGGACTCTTCCACGATCGGGCGCATGA 175012 33 97.0 33 ................................T ATCAACTACACGAGACAGCTTGATTGTCGTAAC 175078 33 97.0 34 ................................T TTTTACTCGGACAAGAGGAAGGTTTCCGATATCT 175145 33 97.0 33 ................................C TTGTCATACCCTACGTATAATAAACCAAAAGGA 175211 33 97.0 34 ................................G GGAAAGACAGGGCGCTTGTCATGATCAAGGAGAA 175278 33 97.0 34 ................................C TCGTGAATCTGCCTTATCCTCGTTATATCCCCGG 175345 33 100.0 33 ................................. TGAGGGATAGATATGGAAGAGGAAATAAAAAAA 175411 33 100.0 31 ................................. TCTTGGCCTCGATTTCCTCTATGTCGTTATA 175475 33 97.0 32 ................................C GTGATCGGTATTATCTGCCCCTTGCGCTGTAG 175540 33 97.0 33 ................................C AACAGGAAGGCTTGGGCCGCTGAGAAAGACTTG 175606 33 100.0 33 ................................. TGGATGATGACGCTCCTGAAGGCAAGGTCTGGA 175672 33 97.0 32 ................................C ACGCCTTCGACCCCGCCAAGCATAAGGGCAAG 175737 33 97.0 34 ................................T CTCAAGGAACATTTATATCCTAAAGACCAGCAAA 175804 33 97.0 34 ................................C CGCCGTTACGGGTGCCTTCCCCATGGCGGAAAGC 175871 33 100.0 35 ................................. CTGTTCGTTGGCATAAAACTGTTGAAATTTGAGTT 175939 33 97.0 33 ................................T TGAAATTTGGATTACCTCCTTTTTTACCAGACT 176005 33 100.0 35 ................................. CCGCTCTTCTCGAGGAGAAGAAAAATTCCTTTGAC 176073 33 100.0 34 ................................. AGTCTGATCTCCGAAGGATAATCCACTAGCACCT 176140 33 97.0 34 ................................T CTGCGTTTGGATATTTTAAGTTATCATCTGCGAA 176207 33 97.0 32 ................................G AGAGTCTAACGGACAAGGAGAAGTCGGCTATC 176272 33 100.0 33 ................................. GTCAAGGGTAAGGGAACTGCAAGAGGAGCAGAA 176338 33 97.0 36 ................................C TCGGTAGACATATCGTAAACCAACTTGTCATACAAG 176407 33 97.0 35 ................................T AATTGATAATTGCCGCCCGCTATCCTGCTAGCCAA 176475 33 97.0 34 ................................T ATAGTCTTTTGTTGACTTTCAATAATTCTCAAAA 176542 33 97.0 35 ................................T CCAATCCGGCGATAAACAAAGCGGATAGTAGATAG 176610 33 97.0 34 ................................C GCTATGTCATTAAAAGCACCTCCGAACGAATCTC 176677 33 97.0 33 ................................C TTGTTTTATACGGGCGATGTGGTCTTGGTATAC 176743 33 100.0 33 ................................. TTTTAGATATGATGGCCTTGGCGCTCTCGGGCG 176809 33 97.0 33 ................................C TTGAAAGTAAAGATGCCTGAGCGTTTTGACCGA 176875 33 100.0 34 ................................. GACCAATCATCAGAATATACACGTCCATCTGAGC 176942 33 100.0 35 ................................. TGTCAATATAGCCGTCCCTGATCTGGACGAGAAAG 177010 33 97.0 33 ................................T AATATGTGAGGAGCGTAATACATATCAATAATC 177076 33 100.0 33 ................................. AGATCCTCCTTGCCCGATGTTGTCTTATCAATA 177142 33 97.0 33 ................................T AGTAGTGTCTACCTCGTAGGTATAAGGAGTGCC 177208 33 97.0 33 ................................G TGACAACAGGTAGAATGTCACGAATTACCCCTA 177274 33 97.0 34 ................................C ACAAGTGGGAACGGCTTACTACCCATGTCGCAAG 177341 33 97.0 34 ................................C TCCGAGGGCTATCTCCTTGAACCACTCATATAGG 177408 33 97.0 33 ................................C TATGCCAAGCATGTGGCGTTAGGGCTTGACTTT 177474 33 97.0 33 ................................T CCTCCAGTACCTTTTTAAGCTGATATAGGCTCA 177540 33 97.0 34 ................................G AGTACAGTCTTGTTGTTAATACTTTTCCTAGAAG 177607 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 80 33 98.0 33 GTCGCACCCCGTGTGGGTGCGTGGATTGAAACA # Left flank : TGATAATTATCCGGTATTTCTAATAAAATGATTTACGATTATGCATATTCTTGTGACTTATGATGTGGATACTACGAGCAAAGAAGGAGCTCGCCGCCTACGACATGTGGCTAAGGCTTGCATAGATTATGGCCAAAGGGTACAGAATTCTGTCTTTGAGTGTGAGGTGACAGAAGCACAATATTGTCTCTTGATTGAACGAATCAAGCGTATTATTGATATGTCTCTTGATAGCGTTAGATTTTATATTCTCAATAAAAACGAAAATAAAAGGGTAAAAGTGATAGGTGTTGAAACTGCTTACAAAGTTAATAATGCTCTTATCATATAATTTATGCGAATGTGGAGTATTACGAAAAAAGTAGTATTTTCGCACCCCTTAATAATTAGCAGATTAACCCGTCTATAAGGCGATTGCAGCCATTAAGCTGAAATAAAAATGAGAATTCGCATATTAATAGGTCTAATTTATTGACTTATAATATGTAACTTTGCACACT # Right flank : ATTTGTAAAGCGCAAGCTTTTTCATAAAAGATATACTTACGTGATGAAGTATATCTTCTATGGGACTTGAAGTGTTCTTCTGCGACGAAGGGATTAGTACTTCGTAAAAATAACTTTTTAAAGTCACTGACACTGACATATAATTTCGCTTAGTTATTTCTGCAAAAATCATTCATATGTAAACAAGTTTCGTATATTCGCAACCTTATAATAGTTTAAATATGGCAGAGGAACTACGGATTAAAAATGGTGATAAACAGGAAATGTATGAGACGTTGCTCCCGCAAATCGCCTCATTGGTAGGTAACGAGACCGACCTAATCGCTAACATGGCGAACATCGCCGCAGCACTCAAGCAGACTTTCGGTTTCTTTTGGGTAGGTTTCTACCGGGTCATAGACAATCAGTTGGTATTAGCGCCTTTTCAAGGCCCTATCGCCTGTACACGAATCAAATACGGAAAAGGGGTATGCGGCACGGCTTGGAAGGAGACCCGTACG # Questionable array : NO Score: 5.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCGTGTGGGTGCGTGGATTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.20,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //