Array 1 178824-184739 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEUS010000005.1 Erwinia amylovora strain EaG5 Ea_G5_contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================================== ================== 178824 29 100.0 32 ............................. GCGCTGGAGTCGTACAGAAAAGAGTGGGACGA 178885 29 100.0 32 ............................. GTGTAGGTCTGGATCATCAGGTCACTGCCCTC 178946 29 100.0 32 ............................. CTGGGTAAATACGGTCTGGTTGCTGCCCGCCA 179007 29 100.0 32 ............................. ACCGCGAACAGCTCAATCTTCGTTATCAGCAG 179068 29 100.0 32 ............................. CTGGAAGATGATATTCAGGCCATCACGCAGGG 179129 29 100.0 32 ............................. ATGGTGTCGCAAAGTGTCGGGCCGTGAAGGTA 179190 29 100.0 32 ............................. TTTTTGTACTGTGAGAAAACGCTGTCAGAGGA 179251 29 100.0 32 ............................. CGGCGCTGTCTATCCCCTGCGCGATCCCCTTT 179312 29 100.0 32 ............................. ACCCAGCTAGGGAATGTAGGTCTAGTCATGAA 179373 29 100.0 32 ............................. TGTGTCCCTATGGGATGTGTTGCTTCAGATTC 179434 29 100.0 32 ............................. GACGCTATAAGCCAGGCAAAAAGCCAGTATGA 179495 29 100.0 32 ............................. CCAGGATAGTCCGTTTTGATACCGTTAATCAG 179556 29 100.0 32 ............................. CGAAAAACATTGCACAAACCGAGCAGGTGGGG 179617 29 100.0 32 ............................. GTATTTATTTTTGCTCTACTTGCCGGGATGTC 179678 29 100.0 32 ............................. CCGGTTAACGTGCTTAAGGGCATCACTGAGAT 179739 29 100.0 32 ............................. CAATATCTTTTGTTTGCGTATAGATATCCTGC 179800 29 100.0 32 ............................. GTCAGGGAACTGACCAAAACCAGCTTTGAAAT 179861 29 100.0 32 ............................. TCCTCCTGCAGGCGGAGCATGAGGATAAAGTC 179922 29 100.0 32 ............................. TTATCACATTGATTTTATGAAATTATTTAATG 179983 29 100.0 32 ............................. AGCGGGACAGGTATATCGCATTAACACTGGCA 180044 29 100.0 32 ............................. TCAGTTCATTGGGCAACAGAACGCATCAACAT 180105 29 96.6 32 ............................T GAGGTATGTACTGCATCGTGCCCTGAACAAAT 180166 29 96.6 32 ............................C TTTTACGAATATGTCTTGTATCCCGGCTCTGG 180227 29 100.0 32 ............................. GGAAAAATTATCGAGCTGGCAAATAATAAAGG 180288 29 100.0 32 ............................. GATAATGCGGAGTTTTCGGGCACGCTAGAGGC 180349 29 100.0 32 ............................. GTGCAGAGATGCCGATATTGACAGATCCAATT 180410 29 100.0 32 ............................. CGCGATTGAAAGGGCTGTGGTTTATCGTGATG 180471 29 100.0 32 ............................. TTCCCATACCTTCACGGCCCGACACTTTGCGA 180532 29 100.0 32 ............................. CGCTTAATCAGCTCAACGCAGCGAAGGACGCT 180593 29 100.0 32 ............................. TCGCGGCAAAGCGCCTTTTGCCGCTGTATGGC 180654 29 100.0 32 ............................. GTGTTCTTCATCTGTATCCACTTCACCCACGC 180715 29 100.0 32 ............................. CAGGGTGTGTGGCTCACGCGCTTTCATCACGT 180776 29 100.0 32 ............................. CATAACGCTTCTTTTCTTTGGTTCTTCTGTCA 180837 29 100.0 32 ............................. TTCCCGCGTTTCGTGGGATACCCCTTTTATGC 180898 29 100.0 32 ............................. CGAACCTATGCGGCATTAGCGGATGCCGCCGG 180959 29 100.0 32 ............................. GTGTTCCGCCTGGCTGGGAGAATGTGGATGGC 181020 29 100.0 32 ............................. CTGAAAATGAGTGGTGGGCAGCCGGGAGTTAG 181081 29 100.0 32 ............................. AACTTACGGTGGCCTGGCTTGAACTTCCGGAC 181142 29 100.0 32 ............................. CCGGGCGAATGCGGGGATTGCAGGGGCAATGG 181203 29 100.0 32 ............................. GTATTTATAAACGATTCATTAATACGCTTATA 181264 29 100.0 32 ............................. CAGCAACCGGTGGTATTTTTCCGGGTCGGTTA 181325 29 96.6 32 ............................C ATTACTGGTAGTAACTCAGCAGTATTCGGTAC 181386 29 100.0 32 ............................. GTGATAAGCGTACCCTGCAGACGGCAAATAAC 181447 29 100.0 32 ............................. CCAGCTCCAGTGCTACCGCAACGCCAGATTCA 181508 29 100.0 32 ............................. AGTAATTAATGATTCTGAAATCTCTCTTAATA 181569 29 100.0 32 ............................. TGCTGAATACCGGTAAGCCTGGCTCTATCACC 181630 29 100.0 32 ............................. AACGTAATCAGTGGGCTGATATGCACGGTCTG 181691 29 100.0 32 ............................. CAGGTATTTCGGATAGCCGGTTGTCTCGGCGG 181752 29 100.0 32 ............................. TGAACGAGCGCGAGGCACCTGACGGTGCAGAC 181813 29 100.0 32 ............................. GTGGTGACCTCTTTGTGGGCGGCGTTTCTGGG 181874 29 100.0 32 ............................. ACTGAAATTTAAAATCACCGCTAACCCGCCAG 181935 29 100.0 32 ............................. GGCGATGAGGGAGTACGCGGAGCGGCAGGGTA 181996 29 100.0 32 ............................. AAAAGCCAACCGCCCGCCCGTAATAAACCTGA 182057 29 100.0 32 ............................. GTTGCAGAGACTTAAAGATCGTCTGCTAGTTA 182118 29 100.0 32 ............................. TAAATGGTTGTCCGTTCTTGGCGCAGACGGCT 182179 29 100.0 32 ............................. TAAAGGAGCATGCTTATACAACTGACAAAATC 182240 29 96.6 32 ...........A................. CGCAATTTTTAGACAATGCAGAATTTTATTTT 182301 29 100.0 32 ............................. GATAGGAGCAAGGCAACGCAAAATCCCGTGAA 182362 29 100.0 32 ............................. AATGTTTGTGTTAATTGGCTTTTCTGCCTCAA 182423 29 100.0 32 ............................. TTATAAAAGCGTTTATTTGTAATAATCGTAAT 182484 29 100.0 32 ............................. ATAATAAAAAGGCCGCGCATAGCGACCTGTTG 182545 29 100.0 32 ............................. GGAGAACGGCGGTCAGATTCCGGTAAACTGCA 182606 29 100.0 32 ............................. CCGGAGACAGTGTTGAAGCCGCAGTCACTCTA 182667 29 100.0 32 ............................. AGTGCTGAGTGTGTTAGTAGACAACCGGCCTT 182728 29 100.0 32 ............................. CTTCGAGATTAGAATATGACTCAGTACCACTA 182789 29 100.0 32 ............................. CTGTGTCAGGTTTCGCCACTTCTGACAGATTC 182850 29 100.0 32 ............................. GACTCTTAACTCATTCTGCCGCTTTCACGGTC 182911 29 100.0 32 ............................. AAAATGTTATAAGCCGTATTCCTTGCGGAACA 182972 29 100.0 32 ............................. GGTTGAATACCTTCAGGGATTTAGAGCTACCA 183033 29 100.0 32 ............................. ATAGTGCTCGACGTTAACGCGTGCGCCGTACA 183094 29 100.0 32 ............................. TACCAACTAGTACGGGTGATGCAGATCCGGTT 183155 29 100.0 32 ............................. CCAATGACGCCGCAAAACTGCGCTCTATTTCA 183216 29 100.0 32 ............................. TTAATTTTATATTCATTTCTGCAGTCTCCAGC 183277 29 100.0 32 ............................. GCTCATCTGCGCACGATGAAAGTCAAAGGGTA 183338 29 100.0 32 ............................. GGGTTAAAAATGAACAAATCAACGCTTTTCAC 183399 29 100.0 32 ............................. CAAAATCGCCGCATAGCAAACCGCTCTTTAAA 183460 29 100.0 32 ............................. CAACAGTACGCGGGGTGCTGTTTATTCTGTCC 183521 29 100.0 32 ............................. CGATCAATGACTTTATGTTAGCCAGGGAAAAT 183582 29 100.0 32 ............................. CCAACCAGCCGGCATTCAGTAGCCAGAATGCT 183643 29 100.0 32 ............................. CGGCGGCTCACAGCCCCTACGGACGTCTGTTT 183704 29 100.0 32 ............................. TTCACGCGCTCTTGTCTGCCACTCGTCAAGAC 183765 29 100.0 32 ............................. CCATCGCAGATGTGGCAATCAACAACAGGCGA 183826 29 100.0 32 ............................. GCAGAGCGAGGCGAGTCTGTTTACTTCACACA 183887 29 100.0 32 ............................. GGGCATGCGCAGAGATTAAACGCTGGGTTTAT 183948 29 100.0 32 ............................. GCCCGCAGGCAGGACGAGGAACGAACACGCAT 184009 29 100.0 32 ............................. ATGTCGAACCTGTCGGCGTATCAACCGGGCTG 184070 29 100.0 32 ............................. GTTGTCCTGTGGCTTGCTAAATTTGGATTCTC 184131 29 100.0 32 ............................. ATATAAAATGAATGAATGGATCAGGGCCTATG 184192 29 100.0 63 ............................. CCCTCGGGGAGGGCTTTACGTTGTTACTCAGAGTGTTCCCGCTCTTTTGCGGCTTAGTGCGAA 184284 29 100.0 32 ............................. GTCAATTATGGACGTACAGGTAGCAGCTACCC 184345 29 100.0 32 ............................. CCGCGAAAATCCGCAGTGAGCTGGCAATGAGC 184406 29 100.0 32 ............................. CCCAAAGGAACAACGAGAGCTATCCAAACCAA 184467 29 100.0 32 ............................. ACCAAAGGCGACCATCAGGTAGAACTGGCCTT 184528 29 93.1 32 .C...............A........... AGCTCAAATGCTACGCATCAGCACTGATTAAA 184589 29 96.6 32 .................A........... TGTCTCCAAGTTAGCAATTTAGTCTCTAAACC 184650 29 93.1 32 .............T...A........... TCATATGCGATTTTCAGCCTTTTAAGACCTTC 184711 29 86.2 0 ..........A.......A.A.....T.. | ========== ====== ====== ====== ============================= =============================================================== ================== 97 29 99.5 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TTCCGCTAAGCATTGGCAGAGAGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGTCCACGAAAAAGGCAGGGGCGGTTAACTCCCGGCCTTATTCGGGTGACTTCAACCCTTAAGGCGTCCGGTCGGTTGCTTAATAGCAACGATAATCAGCAAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCACTAGTATTGCCTTGATATAAGAGCGTGCGCGCAGCCTGTAAGTGCGAGCACGTAATGGTCGACAAAAATCAATCCGGTTTACAGGCCGGTTTTTTTCCGCCGCCACGCTGCCATTTCCGCTATATTCAAGAAGTTCACTTAGTCGATTACCCTTGTATTTGGCCGAGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAAAGTGGAAAAAAGTTGGTAGAATTGTAGGGGGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : GCATGCGCTGACGAAGATGGCCTTATCACAGTCACCATCCGTAATTTGTGCCGGGAAGCGTCGACGTGACCACGATCGGCATTCTGCACCAAACCCGCCGACCATCGGCATTAAACAAGCGTGAAATTTACATCATATCATCATGGGGTTCCGCATAAGCAGGGTTAGCCTTTATTCACTACTTTCAACTGACCAGATATTTCAAATCATCTATTTTACGATAAATGCTGAGAACCATTGATATGTCAGAAGACCAAAGTCAATATGGCTGGGGATTTTTAAAAAGGGGCCGAAACCTTGAACTTATATAAATGATGGATAAATTAATGAATTTCAGGTTGATAATGGTTCTGATTATTATATTCACGTTGCTGCTGTTGTTTTTTTCTAATATCACGATGCTTAATTCAACTATCAATATCAGAATTTTTTTTAGATTAAAGTCATTATTTCCCCATTTATGGGGATAAACCTGGGCCAATGTCTTGAACCTAATGTTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 193810-197073 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEUS010000005.1 Erwinia amylovora strain EaG5 Ea_G5_contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 193810 29 100.0 32 ............................. GGAACCATATTCTTCATAGCCTAGCTTTTCAT 193871 29 100.0 32 ............................. CGGGCGAGTTTTTCAGGATGCGTCTCATTGAA 193932 29 100.0 32 ............................. CAATTTGTATACAGTCGAGAACGTGCCTTATG 193993 29 100.0 32 ............................. AACCTTTTACCATTGTCATAACAATATCTTCA 194054 29 100.0 32 ............................. CCAGGGGAGTTTCTTATTTTCCGGAGAGAATG 194115 29 100.0 32 ............................. TACGTCAGCGGCATTATAAGGATTTACACGGA 194176 29 100.0 32 ............................. CCTTCAGGCCGCTGGATAGATGCTAACCCACC 194237 29 100.0 32 ............................. CCGGCACCAAATGCTTATCACTGCCAGCGGCG 194298 29 100.0 32 ............................. ATTTCTGGATTAACACTCAGGCGGCTCATGAC 194359 29 100.0 32 ............................. GTCATTCATACGGGCTATACCGTCCTCCAGAT 194420 29 100.0 32 ............................. GTCAGCAGCTGTAATAATGCGCACCTTTTCCC 194481 29 100.0 32 ............................. CGGGCATTAGCGGCTTTGAAACGAGAACTGGA 194542 29 100.0 32 ............................. CACGATCACACTGTCAGCTAGATTTTATGATG 194603 29 100.0 32 ............................. AATATCTAGTGTTTATGCGTGCCTTTTCTGGC 194664 29 100.0 32 ............................. CAACTGAGCAACTCCGCTTTGCCCCATACCAA 194725 29 100.0 32 ............................. CCATTCCCGAGCCATCGTCGCGACATCCAGGC 194786 29 100.0 32 ............................. AAAGAAACTACCCCCAACCCCCTAACGGGTGT 194847 29 100.0 32 ............................. CGACTATTCGGCGAACTGAAAGAGCCAACCGT 194908 29 100.0 32 ............................. ACGCCGCCATTCGGATCCGGGGAGGATTCGGA 194969 29 100.0 32 ............................. AATGCCTCATACCTGGCGGCCAGCCTTCAGCG 195030 29 100.0 32 ............................. TAACTACGTCAGCGGTGTCCAGCATGACGGAA 195091 29 100.0 32 ............................. TTGAGCACGGTAACCCTCGCCACCCGGCAGCT 195152 29 100.0 32 ............................. GAGAGCAACAACAAACTCCGACCGGAGAAACC 195213 29 100.0 32 ............................. TACACTGCAGGCAGTACGGGAATGGTTAACCC 195274 29 100.0 32 ............................. GTTTCGGCGAGCGCGTATATGGTCACGTTCAC 195335 29 100.0 32 ............................. ACTTGACTGTTTATGCAGTGGTTGTATTTCTT 195396 29 100.0 32 ............................. GTTGATACGGCTGATTACAATAAAATGTCACT 195457 29 100.0 32 ............................. TAAAAAATGCCGCCATCGAATCAGCAAAATCG 195518 29 100.0 32 ............................. CTGCGGAGCGTCAAACGGGCGTTAACTCTCGA 195579 29 100.0 32 ............................. CCCTTCTGGTGTTTTGATTCTCCTAGGTGATT 195640 29 100.0 32 ............................. ATGGCCCGCTAAATGTTGACATGTCTGGTCGG 195701 29 96.6 32 ............................T AATGGACGAGATTTCACAGAAAATATCTGTTC 195762 29 100.0 32 ............................. TCTTTATGACGCAAAGCAAGCCTCAGCCGAAC 195823 29 100.0 32 ............................. GCTACTACGTGTACGCACAGCCGCTGGCCAGT 195884 29 100.0 32 ............................. CAGATGAGGCTGCAAATTCCAGGCACTTTTTA 195945 29 100.0 32 ............................. GATGGTCGTACCGATGTTTGCGAAAGATTCGC 196006 29 100.0 32 ............................. ACGGTCAGATGGTGGCGCTGGTTGCGCTGGCA 196067 29 100.0 32 ............................. CTGTTTATGAAAAATGCCAACAAACAGGAAGC 196128 29 100.0 33 ............................. ATTTTTCAGGAACGGGCCGACACGAAAATTTAT 196190 29 100.0 32 ............................. ATATTTACTAGCATTTCCCCATGCTGTATCAC 196251 29 100.0 32 ............................. CTGGAGCATGAGACGAAATCGGGGGTAGTGCT 196312 29 100.0 32 ............................. CCGGTTCAGGTTTGATAGGTTCTGCCTAACTC 196373 29 100.0 32 ............................. TTCGCATACGACAATCTCCCGGCACTGATTAA 196434 29 100.0 32 ............................. CGCGAGTACCCATCCATCCCCGCAGAGGCATT 196495 29 100.0 32 ............................. GCAGGGCCGGTTTACGTTGCGCAATCGGAGAT 196556 29 100.0 33 ............................. CACCAGTGTGTACATTCCAGACTCAGAAACCAC 196618 29 100.0 32 ............................. CCTCGAGGTGTTCTAAGCACTCCGGGGCTTTT 196679 29 100.0 32 ............................. GACGCTCAAATCAGTGGCGGCGAAACCCGACA 196740 29 100.0 32 ............................. CCAGAGGGGATTTAGCAAACGTCATTTCTGAC 196801 29 100.0 32 ............................. TCATCTGCGGGTCGGGTAGGCTGCTTACGGGT 196862 29 100.0 32 ............................. CAGCTATTCCCCGCATCGGTCAGTACTGCGCT 196923 29 100.0 32 ............................. TGGCCCACAATGGTAAAACCGGCGGCTTTCCA 196984 29 100.0 32 ............................. ATGATGGAGCTGATAGTTTTATTAGATGTCGA 197045 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================= ================== 54 29 99.6 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : GAGAGATCTCCCCACCCCCACCCNNCCCCCACCCCCGCCGGATGCCCAGCCGGTTGCCATCCCTGAACCACAGTCTTTTGGCGATGTCGGGCACCGGAGTGCGTAATATGAGTATGCTGGTGGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGACGTTTCGCGCCGCGTGCGGGAAATGATTTGGCAGCAGCTTAATCAGCTTTACGAGAATGGCAATGTGGCGATGGTATGGGCCACTAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCCGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAATCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGAGTGTTCCCCGCGTATGCGNN # Right flank : AATGATATGTTTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCTGGCTACATTACCGGTAAAAGAGGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTGAAACCAGCAAGGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAACCCCTCTTTGGCTTGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCAC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 206537-206865 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEUS010000005.1 Erwinia amylovora strain EaG5 Ea_G5_contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 206537 28 100.0 32 ............................ TTTACGTTTGCGTTAACAGTAAGCTCTGCAAC 206597 28 100.0 32 ............................ ATCGCACCCCACTGATTGAAGAGCAGCACACT 206657 28 89.3 32 ......C..T..........T....... TAGCAATAAATTCGATAGACGCTGATTTGCGT 206717 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 206777 28 96.4 33 ..........................G. GCCAACGTTCACTGTCATTTAGCCACGCTTCCG 206838 28 78.6 0 .....A........G.....T...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 93.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGTGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGACTGGCGTTATAGGATGGTTTTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTTAATGCGATAAGCCAGTTAGCCCGGTAATGTAACG # Right flank : AGGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCTTCACGGGCTTCTCATGCTGTGGACATTACGCTGACAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGCTAAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAAGTGGGGGTTTTTCACGGTTTTTTTACAATAAAAAAAGAAAGATCTTATATTTTTTTTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTGAAATTTTTTTACTCAATAATTTCCAGAACTTTCATTTTGAGTTAGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGTATTGAATGAAATGCA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //