Array 1 515043-514368 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP063311.1 Anabaenopsis elenkinii CCIBt3563 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 515042 37 100.0 40 ..................................... TCTTTTTTGCAATGCACTTAAACCTCTTACAGCGTGTATG 514965 37 100.0 31 ..................................... AATTCCTCCTAGGAGCGCCAGCCATTTATGG 514897 37 100.0 35 ..................................... AAAAATGGTAGGCGATGCTGGGATTAACGCCTGTT 514825 37 100.0 34 ..................................... ACACTGGGGTCATCCTGTAGCCAGAAGTCTAATT 514754 37 100.0 36 ..................................... GGTTACTCATCAAAGGTGAAAGTTGCACCTGTTTGG 514681 37 100.0 39 ..................................... GAGTATGGCACTAGGTTGATCGCCGATTGCATTCAGCTT 514605 37 100.0 38 ..................................... TTTCAATCATGAATACCGTTGTGATTATAAACCTGAGT 514530 37 91.9 34 A..............................G....G ATAAATAATGAGAATTGCGATCGCCCTAAACCCC 514459 37 83.8 18 C.G.....C...C..................G....A GGCGATCGCACGCTGTGG Deletion [514405] 514404 36 78.4 0 ..G.-.G.....C...........T.......CC..G | T [514395] ========== ====== ====== ====== ===================================== ======================================== ================== 10 37 95.4 34 GTCACAATTACCTATAATCCCTATCAGGGATTGAAAC # Left flank : GTTTTTACGGCTCGGTCAATTTAGACCCCCAGCGGGTGATTAGGGATGCGGAACAGATAACTAATGAGGTTCTGCAACATATGGGGGGTTTAGTGGGTGCTGATGTCACGGTCACTCTAGATATTCAAGTCCAATTACCCGATGGTGTCCCAGATTATATAATTCGCACAGTTACTGAAAATTGCCGGACTCTCAAATTTAAAAGTTACAATTTTGAGCAAGAGTAACCAAACCTTCTTTGGCTGCTGTTGTGCGTCAACCACTAGGTGTTAAAATTAAATCGAGAATTTCCAGGCTCAGAACCTTTGTATACTCTAGGTTTCGAGTGTTTTTACTCGTTTTGAGGTTGACGCATTCTCGGCAAGTTTGACCAGATAAGGGTTTGAGGGATTTTTTTTGATGCTACTGTTGACAGCAGGATGTCCGAAAGGTTATATTGTCTCTAGGTTGACGGAACAGAACCTTGAAAACCAAATATATCAATGTTTCCCAGGGTGGCG # Right flank : TTTTTACAACTCGTCCTTGGAGTTGTTGACCAAGCCAAGGTGTATTACTAGAAAGTGTATAGAGGTTCTGGGGTTCCACCTTCCAGGTTTTCCGTGGGTCAAATAAGATCAGTTCAGCTTTTGCGCCGGGGGTAATTGTACTGGGTTGCTGTTGTAAACATTTTGCTGGGTGAGTACTCAGAGCACCCCATAATTCTAAAGCTGTAAGCTTCTTAGTTTCGACTAAATTTTGCCAGAGTAGGGGTAATGCTAACTCATAACCGATAGCCCCTGGGGGTGAAGAGGCGAAGGCTTGCATTTTTTCCTCATAGGTGTAAGGTGCATGGTCTATGGCGATCGCATCTATCACACCTGTTTTCACCCCTGCTTGTAAAGCCTCCACATCCTTGGGGTTACCTAGGGGAGGTTCTAATTTCAGACTTGAATTATAACTGATTATCGCGCTGGTGTCAAGTAACAAGTGCATCCAAGTAGTGCTGGCGGTGATGGGTAAACCCCCC # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:0, 3:3, 4:0.77, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACAATTACCTATAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [18-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 2 1320887-1318180 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP063311.1 Anabaenopsis elenkinii CCIBt3563 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 1320886 37 100.0 39 ..................................... TTTGACAACACGGATTTGAAATTTGATTTGGTTGATTTG 1320810 37 100.0 40 ..................................... AAACAAATATTGGTGGGTGTCCATCTTGATGTCAGGGAGG 1320733 37 100.0 38 ..................................... CAGGTGAAGATGGAATACCTTCGTATATAGGCTTAATC 1320658 37 100.0 36 ..................................... TTCCCCGTCAAAACATAGCAATATAGTCTTCCTTTC 1320585 37 100.0 36 ..................................... AAGCAATCTGATTAAGCTTGCTCCTACCTACGTCAA 1320512 37 100.0 33 ..................................... CTAGAGGTGAGGTATGGAGGAAATACAAGCAAA 1320442 37 100.0 38 ..................................... GTCTTTCATTGCCGTAGAAAAGAACATTTTATCAATGG 1320367 37 100.0 38 ..................................... AAACTGTATTTGCTGCTAGCACAGATGAGGTGAAACAA 1320292 37 100.0 35 ..................................... ATCCCGCTTCTTGTAGATTATCCATGGTGATTTGA 1320220 37 100.0 39 ..................................... TCAAGGGCTGGACGGGTAAAATCACCCATATCAACGCCA 1320144 37 100.0 37 ..................................... TCTTTGATCGTGTGTCCTGGGAACAGTCTAAAGGTTA 1320070 37 100.0 36 ..................................... AATATCCATCAAGGTTTACTAAGTCTGCTAATACCT 1319997 37 100.0 37 ..................................... GGTCACAGTAGAAGAGGGTTTGAGGTGAATCCCATCG 1319923 37 100.0 36 ..................................... GCTAACAGTAGTAGTTACATTTCTGGGGTTGCTTCG 1319850 37 100.0 36 ..................................... ATGATGTAAACAAAACGAAGGAAGTCCACATGATTA 1319777 37 100.0 39 ..................................... TCACGGACTCAAGAATACAGTCCAGAGAGACGTACTTGT 1319701 37 100.0 36 ..................................... GGGGTAATCGATTGTTACACGGTTAAAATTCTTGAG 1319628 37 100.0 37 ..................................... ACTTTCCCTAGTTTATTTAGTCCGCAGAAGCTGTCAT 1319554 37 100.0 37 ..................................... AACTTGTTGAGTTACCTGTCTTTAGATTCCATACCTG 1319480 37 100.0 34 ..................................... TAGCAGATGGGCATGGGTTTCAATTTGCCCTACA 1319409 37 100.0 37 ..................................... CATTCTGGCGGCCAGTTATCAGTCCTTTGCCTTTGCC 1319335 37 100.0 37 ..................................... TTTAACTCAAATCTTACCAAGTGGCGCTTGCCTCTGT 1319261 37 100.0 37 ..................................... AGTTTAAAAGAGCTATTATGGTTTCTGAAAGAGTATG 1319187 37 100.0 38 ..................................... AAGGCAGAAGTTGCTAATCCCCACAATGCAAGTGATTC 1319112 37 100.0 41 ..................................... TTTACCCAATGGTGGGTTTAACTCGTTCTGAATTTAGAGCT 1319034 37 100.0 40 ..................................... AATGTCTGAGATTGCTGCTACTAGGCAACCGCTACCAGAA 1318957 37 100.0 41 ..................................... AATTTTTGACCAGGATACTTTACGTAGCACTGCCTAGCTTT 1318879 37 100.0 39 ..................................... TGGTCGCAATTTAGCTTCTGTGTTGCGTTCTACCAACTT 1318803 37 100.0 39 ..................................... TACAGGCATTGATTCTGCCCATTCGATAAATGGCAAAGA 1318727 37 100.0 35 ..................................... GTTCAATTAACCGTGGCAACCCCTACGCTAGATAA 1318655 37 100.0 37 ..................................... ATTTTTGTAGGCTTAAAATCGTGGGAATACCATTTCT 1318581 37 100.0 33 ..................................... TAGTGCCATAGCGATCGCTCTCGCCACCTCTAA 1318511 37 100.0 37 ..................................... ACTGCCATTTGATTCGACTGTGTAGTGAAATTCTTTG 1318437 37 100.0 37 ..................................... TAGTTATATACGGTTCTTTCACTTACACCCAGAAATG 1318363 37 100.0 36 ..................................... CTGCCAAAGAAATCTATAAAGTTGTGGATCTGGCAG 1318290 37 100.0 37 ..................................... TAGCACGGGTGCAAGCAAAAAGCAAGCAAGAAGAAGG 1318216 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 37 37 100.0 37 CTTTCAAATTAATGAATCCCGTTCGCGGGATTGAAAC # Left flank : ATTTTACCTAATAATTTACGATTTGCCAGATAATAAAGCAGCTAATAAGCGACGGACAAAACTGCATAAAATGCTCTCTGGCTACGGAACTTGGACGCAGTACAGTGTGTTTGAATGTTTTTTAAATGCTGTGCAGTTTGCTAAACTGAAGGTGCAGTTAGAGAATTTAATTAAACCTGCTGAAGATTCCGTGCGTATCTATGTTCTGGATGCTGGAGCAGTACGTAAAACCATTACCTACGGTTCCGAACAACCCCGAAAACAAGAAACAATTATATTGTAATCTTGATGTGATGGTGATATGATTTTTTTGGCATGGGAAAGCATGGTCAAAAACCCCCCACCTCCCGCCAAAACCTCAGAACCTTGACAAGTTAATAGTTTCGGACTTTTCATAATGGATGTAGAGCCTATTAGTGAACGCTGAAAACGGACTTTTAAAGTAGTCCCGCCAAAATTGGCTGGGAAAATGGCTCTACTACTAGCTTCTGGCTGGCGGA # Right flank : ATCTTATGTTTGACATTAAATTGTTTAGCTTTGAATCCTGAAATATTTATGGCGACTAATGAAATTTTTTCTATGGTGTGCGATCGCCTCCTCCCTCGTCTCATCTCAGGAAAACTTTCCGTAGAAGACTTAGACGAAAAAAGTTAAAATTTATCTAGGAGGTAAGCTATATGTAAAAAACAATTCCAGAAATTTATTTACAGAATAGTTGCCTTATTCAATCATCAGGAAAAATCATCATGGTAAAATCAGCCCCAAAGCTAATCACGGTTGATGAATTTATTGCTGAATACGGCGATCAAGAAAATTATGAACTAATTGATGGGGAATTAATGGAAATGGAACCAACCGGACCCCATGAGCAGGTATCATCCTTAGTTGGGCGCAAACTTAATGTAGAAATTGATCATCAGGACTTACCATACTTTATCCCCCATCGCTGCTTAATTAAACTATTAGGAACAAATACAGCATTTCGTCCCGATGTTATTGTTCTAGAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAAATTAATGAATCCCGTTCGCGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.90,-9.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 3 1792638-1793266 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP063311.1 Anabaenopsis elenkinii CCIBt3563 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================ ================== 1792638 35 100.0 38 ................................... TCGCTAAACTATACTCACAGCATGAGTATAACCCGTGC 1792711 34 97.1 33 .....-............................. GAGCTTGTATTGTGTCTGGTGTAATGCTTCTGC 1792778 35 100.0 41 ................................... GTTGGGATTTTTTTTTACAGGCGTGGGACTTGGATATAAGC 1792854 35 100.0 44 ................................... AAGAATCTGGATGATGTACTCTTTGATGATTTGTCGTCACAAGC 1792933 35 100.0 40 ................................... TATAAATATAGACTGGTTTATCCATGCTTCGTGGTAGTGT 1793008 35 100.0 40 ................................... TATAAATATAGACTGGTTTATCCATGCTTCGTGGTAGTGT 1793083 35 100.0 40 ................................... TATAAATATAGACTGGTTTATCCATGCTTCGTGGTAGTGT 1793158 35 100.0 39 ................................... AAATGGTACTTTTTATTATGTAAAAGATTTACCGCAAGC 1793232 34 97.1 0 ......................-............ | G [1793252] ========== ====== ====== ====== =================================== ============================================ ================== 9 35 99.4 40 TACAATTACCTATAATCCCTATCAGGGATTGAAAC # Left flank : AGATAATCGCCGCAATAAAATTCACAAAATTCTTAAATCCTATGGACAGTGGATGCAGTATTCTGTATTTGAGTGCGATTTAACCCAAACTCAGTATGCTAAACTGCGATCGCGTTTATCTAAACTCATCAAACCAGACCAAGACAGCATCCGGTTTTATGTTCTTTGCGCTTGCTGTCAGGGAAAAGTCGAGCGCATTGGCGGTGAACTCCCCAGGGACAACACAGTCTTTTTTGCTTGAGTTTTGCGTCAACCAGTAGATGTTTTAACAAGATGGGGAAATTTTCAGGCTGAAATCCTTACCTCATCTGCTTTTGAACCCTCTCATCTTTAAATTAAGGTTGACGCACCCCAGTGAAACCTTTGCTGTCGCGTGTTTTGAGGTTAATTTCTCAAATGTTACTCTTGACAACCCAACTCCTGAAAAGCTATAGTTGTTTTAGATTGACGCAACAGAACCTTGAAAACTACATATATCAATGCTTTCACCTCCGGGCGGC # Right flank : CTTGTCCCCTCCCATCACAAGGGGAGGGCTGGGGTCGGTTTATGTTATAATCACCTACAATCGGTGACCAGAAGGTTACAAAAAACCGGAGAAAATCAGATACTCCAGATTAAAAACTACTTTCAACAATCGGAACTATAGGCTCAAATGGTGGAGGCTCAGGATTAAGTAACTGCTGCCAATTCTTAATTTGCTGTTGCGCTGCATTATAAGCAGAACTACCTCGGGGAATTAACCTCGCCGTCTCAATCGCCCTAGGAAGATTAGAATTACTCTGAGAATTAGCAATGGTTAATAACTGCTGACTCCATTGGTTAACGGCAAAATTCACATCCATCCGTAAGGTGCTACTTCTGGGAACACGGTTCGCTATGGCGATCGCTTGAGACAAAGCCTCTGGCGTACCCGCACCTGCTACCTGTTGCGCCCTAGTCCAGTTTTCGCGGGCGCGGATTTGCCTTTGCCAATTACTTATCTCATTCCTAGCTTCCCCAGAAAGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TACAATTACCTATAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 4 2110325-2112126 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP063311.1 Anabaenopsis elenkinii CCIBt3563 chromosome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 2110325 36 100.0 37 .................................... TTAACACGGGCTTGCCCTGTTCTAAATAGTCCTTTGC 2110398 36 100.0 35 .................................... ATAAGCCTTTAATAAGTGTTGTTAAAGGTTAAAGC 2110469 36 100.0 38 .................................... CAGTGTTTTCTATATTGTTCTTGCTTCTTATTATGTGT 2110543 36 100.0 39 .................................... CTTGTATGCATTGCGCTGCATCAGTTCAAACTCTTTGTA 2110618 36 100.0 37 .................................... TTGTCTGATTGGTCTGTAGAATCCCAAAATCCTTCAA 2110691 36 100.0 38 .................................... GCTACACCACCCTTACTGTTTGAAACTGCTATTACTTT 2110765 36 100.0 35 .................................... AATCAATAAGGTTTAGAAACATGGCTGAAGAAAAC 2110836 36 100.0 36 .................................... TAATATACAGAAGTCACAAAATAATGCTGCTAGAGA 2110908 36 100.0 36 .................................... TAGAAGCTGAACAAGCTTTTTCTCTTCAGCCTTGCA 2110980 36 100.0 38 .................................... TCTACCGCGATAAATAACAAGAGCTGGTAGCATATGAA 2111054 36 100.0 36 .................................... TGACAATTTGTAGAAGGAGAGACCCCGCTATAAGTT 2111126 36 100.0 40 .................................... TTGGTGCGCTCATTCTCCCCTATCCAGCCAATGACACCAG 2111202 36 100.0 38 .................................... GCGAAATCGCACAAACTCAGCTTTAAATGCCTTCTTAG 2111276 36 100.0 36 .................................... CTCAACCCCTCTTTCCACGGAGGTGAATTCGGAAAT 2111348 36 100.0 37 .................................... GTGATGTGCAGGCAGCTACCCTTAAAAGGATGTTAGA 2111421 36 100.0 36 .................................... TTAGATTTAAGGTCTTCAAAAATTAGTCTTAACGTT 2111493 36 100.0 44 .................................... TCATTCCGTAGCTGGTTGTTAACAACTAAGGAGTTGTTAAACCG 2111573 36 100.0 38 .................................... TCAGAGACAAACCTAAGTCCTCAAGCCGATCCCTTAGC 2111647 36 100.0 38 .................................... AATGTGAGACAAAAGAGCCGAGAATTGACCATAGGGGC 2111721 36 100.0 35 .................................... GCACACACGCATATCCCTTGGGATTTCTTCAAGCA 2111792 36 100.0 38 .................................... CTGGAAAGGCTGAACTCTTTTTTTCCTGATGGAGAAAA 2111866 36 100.0 38 .................................... TTTCAGCGGCAGGGGTCTTTCCACTAAATGGGATTGAT 2111940 36 100.0 39 .................................... TAAGCGCAGGGTTGTTAACAACCTGCTGCTATGGGACTA 2112015 36 100.0 40 .................................... GACATCGTAGGCTTCGTAGCCTAGATATACACACAATGCA 2112091 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================ ================== 25 36 100.0 38 GACCGCTTCCCTCTGGGAAGTGGAATTAATGGAAAC # Left flank : CTACCTGGGCTGATGTGATCAACCGCGCTAACCTGGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCCTTAGACTTGGCTGCTGGTGAAGTTGCTCCTGTTGCTTTGACTGCTCCTGCAATCAACGGTTAAGAGATTAAGGTTAAGGAACTTAAATAATACTTTCTCTGCTTGATCAAAGCGCCCTTCCTACGGGATGGGCGCTTTTGGTTTTGGTAGAGTAGTATTGACCCCTCACCTTACAAAAGGTTGGGGTATATGGCTTACAGCAGCGCTTCGCCTAAATGCTGTTGTAATGCACTAGTTAACTATTACGGAAGTTCAATCAAAATAGCTGAAATAGTGATTCTAATGTATTGAACCTCGGTCGCTTGCTGGGTAAGGGTTTCAGGAGTTTTGTTAGTATGCTAAAGTCCATTTCAGCCGTTAAGTTTATTGAACCTCGGAAAGTGCCTCTAGACTTCTTACTGGGACTGTGTTTAAAATGGAGGG # Right flank : CACACTAATCGAATGGAAACTTCAGGAGTTGCAGGAGTTGCAGGAGTTTCAGCGGCAGGTCCCCACTCGCTGGGGACACTAATCGAATGGAAACGCTAAGTAAACGTTGTTAAGGGAGTCTTGTTAACAAGACTCCCTTAAGTCCCCACTCGCTGGGGACACTAATCGAATGGAAACCGCTGTCTTTTCAACCACCGGTGCTTCAACAGCCTGAGTCCCCACTCGCTGGGGACACTAATCGAATGGAAACTCAACCAGCGGGAAAAATTGAACAAAAAGCATATCTACGTCCCCACTCGCTGGGGACACTAATCGAATGGAAACGGGCAGCCCCTGAAGACCAACCCTTTGTGGGCAGGTTGTCCCCACTCGCTGGGGACACTAATCGAATGGAAACAAGCAAGAGCTTATTTGACTTTTAACGTACGGGGTTTTTCGGCGTCCCCACTCGCTGGGGACACTAATCGAATGGAAACAATGCAGGGAACTCCCTCCTGTAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GACCGCTTCCCTCTGGGAAGTGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.30,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 5 2112184-2112674 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP063311.1 Anabaenopsis elenkinii CCIBt3563 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================================== ================== 2112184 36 100.0 47 .................................... GCTAAGTAAACGTTGTTAAGGGAGTCTTGTTAACAAGACTCCCTTAA 2112267 36 100.0 37 .................................... CGCTGTCTTTTCAACCACCGGTGCTTCAACAGCCTGA 2112340 36 100.0 38 .................................... TCAACCAGCGGGAAAAATTGAACAAAAAGCATATCTAC 2112414 36 100.0 37 .................................... GGGCAGCCCCTGAAGACCAACCCTTTGTGGGCAGGTT 2112487 36 100.0 43 .................................... AAGCAAGAGCTTATTTGACTTTTAACGTACGGGGTTTTTCGGC 2112566 36 100.0 37 .................................... AATGCAGGGAACTCCCTCCTGTAGTCTTCTGTGGTGT 2112639 36 97.2 0 .........................T.......... | ========== ====== ====== ====== ==================================== =============================================== ================== 7 36 99.6 40 GTCCCCACTCGCTGGGGACACTAATCGAATGGAAAC # Left flank : ATGTGAGACAAAAGAGCCGAGAATTGACCATAGGGGCGACCGCTTCCCTCTGGGAAGTGGAATTAATGGAAACGCACACACGCATATCCCTTGGGATTTCTTCAAGCAGACCGCTTCCCTCTGGGAAGTGGAATTAATGGAAACCTGGAAAGGCTGAACTCTTTTTTTCCTGATGGAGAAAAGACCGCTTCCCTCTGGGAAGTGGAATTAATGGAAACTTTCAGCGGCAGGGGTCTTTCCACTAAATGGGATTGATGACCGCTTCCCTCTGGGAAGTGGAATTAATGGAAACTAAGCGCAGGGTTGTTAACAACCTGCTGCTATGGGACTAGACCGCTTCCCTCTGGGAAGTGGAATTAATGGAAACGACATCGTAGGCTTCGTAGCCTAGATATACACACAATGCAGACCGCTTCCCTCTGGGAAGTGGAATTAATGGAAACACACTAATCGAATGGAAACTTCAGGAGTTGCAGGAGTTGCAGGAGTTTCAGCGGCAG # Right flank : CTCGCATCTGACCCCGTCTCCGCAGGCAAGCATAAGCTGATGTCATCAACCGCGCTAACCTGGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCCTTAGACTTGGCTGCTGGTGATGTTGCTCCTGTTGCTTTGACTGCTCCTGCAATCAACGGCTAATTAATGGCTAATTAATCAAGTTTAGCTGAATCAAAATCGCCTCTCAGAAATGAGGGGCGTTTTTTGGTTTGGGTTTTTTGGTTTGGGTGATGTTACTGTATTCCTACTTCTCGACCTCCAGAACCGAAAATAATTTCACAAGTCTATAGGCAAAACATAGTAAGATTAGGGGTAATAAAAAATTAACCTTGCCCCTAAAAAAAATTAGTGTAAAGTGGTAAGATTTAATTATTCGCTGTTTAAACGCCGAAAATCCCAAGGCATCTGAGGACGGCGTTGATTCCAAAAACCTAATTTCTGACTCTTGGCAGATTTCTCTGCCTGCAATAAACT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCCACTCGCTGGGGACACTAATCGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 6 2264640-2266006 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP063311.1 Anabaenopsis elenkinii CCIBt3563 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================= ================== 2264640 36 100.0 36 .................................... GTTGCCACCCCGTTCTCCCTTTACAGTCTTTAACGT 2264712 36 100.0 37 .................................... TAGCCTGACTGATATCGGACTGCAACTGCTCTAATCT 2264785 36 100.0 45 .................................... TTCTCATACTGACTGATTGATCATTTACAACAAATAGCAGCACTT 2264866 36 100.0 36 .................................... TATGTTGCTGCGTAACTTACCGACCCGCTCAACCGT 2264938 36 100.0 38 .................................... TGTTATTACGACACTTAACAAAAGACAAATACCTGTAA 2265012 36 100.0 36 .................................... GACGTCGATTTTTGAAGCAATGGTTAATAGAACTTG 2265084 36 100.0 38 .................................... GTATAGTTGCTGATGTTTGTTAGTTTGTCTCATCAGTA 2265158 36 100.0 39 .................................... ATATGGCAATTCCCAATTCCACATATCTTGGTCATTTAC 2265233 36 100.0 38 .................................... GCAGCTTGGGTATATGCATTGAAATCCATTCGACGTTT 2265307 36 100.0 38 .................................... ATAGATTGCGTGGGAAGGGATACAATTAGGATGTCCTC 2265381 36 100.0 36 .................................... CTTTAGGAGGACATTATCATATGAACTTTCACTTAC 2265453 36 100.0 39 .................................... AAACCGTCGGACTTTAGTTGGGCTGCGATCGCATTTACC 2265528 36 100.0 36 .................................... CAGAAAGGTCTGGAAGCGGTCTACTTGATAGATTAC 2265600 36 97.2 36 .........C.......................... AACTATATCTACTAAATGGGGTATCCCATCTTTGTC 2265672 36 97.2 40 .........C.......................... GGCCGGCGTTCGTGCATGAGCAGACGGGCAGTCTGCCACA 2265748 36 97.2 37 .........C.......................... TCTTCTTGCCAGAGGTAATCATTGGATATATATTGAA 2265821 36 97.2 39 .........C.......................... TCCCTGATTAAAGAGCATATTGTGGGGGTTTGCAGAAAT 2265896 36 97.2 39 .........C.......................... AATTTAACAAAAGCGAGTTTAACAAAACTCACCAAAAGC 2265971 36 91.7 0 .........C.....................A.T.. | ========== ====== ====== ====== ==================================== ============================================= ================== 19 36 98.8 38 GTCCCCACTAGCTGGGGACACTAATCGAATGGAAAC # Left flank : ATTCCCTCTTAACCATGTTTTTGTATGTCATTGCTTACGACATCCCGGAGGATAAACGGCGGAAAAAGGTAGCTGATTTGTTGGAGGGTTATGGACAGCGTGTACAGTATTCTGTATTTGAGTGTCAGTTAAATACCCAGAAATACCAAGACTTACAGCGGAGGTTAAGGAAAATTATCAAGTTAGAGGAGGATAACATCAGGTTTTATCCCCTGTCTCGACATACTTTATTTCAAGTAGAAACTTGGGGTGTGGGTATACCGGTGATTAAACCCCCCAGTTCCGTGATTATTTGATTTTACCAATGGCTCCCCAGGCGTGGCGGTAGTTCAGGTAAAATGGCTGAAATATTGATTCTGGTGTTTTGAACCTCGGTTCCTTGCTGCATAAGGGTTTCAGCCTTTGACAGACAGGGGTAAAGTCCATTTCAGCCATCGCTTTTTCTGAACCTCGGAAACTGCCTCTAGACTTCTTACAGGGTAATGGTTTAAAATGCAGGG # Right flank : CGGTTGACGGTTGACGGTTGACTGTTGACTGTTGACGGTTGACGGTTGACTGTTAACGGTTGACACAAGATACCCAACTTGTCGGGTATCTTTCCCAGTGGAAGAGTGAGAAGAGAAACGCGATCGCATTGAGAATTGTATGGATTGATTGATGTTTCCCTGGGGATATCAATTGACTGTTGACGGTTGACTGTTAACGGTTGACACAAGATACCCAACTTGTCGGGGATCTTTCCCACTCGAAGAGTGAGAAGAGAAACGCGATCGCATTATTTGGAAGGCTAAAAATGGTCAAGTCCCCACTCCCCGGGGACATCAATAATGATTGTGTATAATATATTATTGTAACTTTTTATTGTATATAGTCAAATGGAAGATACACGCAATAAAATTATAAATTTTGTCGAATATGCTACTAATTTGAAAGGAGATGAAAAAGGGGAAGCACAAGTTTTTTGCGATCGCCTTTTTCAAGCATTTAATCACAAAGGCTATAAAGA # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCCACTAGCTGGGGACACTAATCGAATGGAAAC # Alternate repeat : GTCCCCACTCGCTGGGGACACTAATCGAATGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.30,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 7 3321066-3321829 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP063311.1 Anabaenopsis elenkinii CCIBt3563 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 3321066 36 100.0 35 .................................... GGTGTGAACGACTTGACCACAGAAGCTCCTGTAGA 3321137 36 100.0 34 .................................... CTTGTTGTTGTGTTTGAGTTTTCATGCTATTTTC 3321207 36 100.0 37 .................................... TGACCTCTTGATGAGCTTTTGGGTATCTGCCCAAATA 3321280 36 100.0 36 .................................... CTTTCACCTTCTACCATGGGGCAGAACTGTAGTGCA 3321352 36 100.0 37 .................................... ATTCTCCAGTGATGGACGTAGTTCGCCCACTCCACTA 3321425 36 100.0 39 .................................... TTCTTGATGCTGTAGTGATCAGCGATATACGTACCTACC 3321500 36 100.0 43 .................................... GTATGCCCGGACGAGATCACGAATATTCATGCTTAGTCCTCTA 3321579 36 100.0 37 .................................... GAGCTTGTCAGCTTGTGGAATAACTTTGAAAGAATAG 3321652 36 100.0 34 .................................... AAGGTCTTCTTGGCTGACCACGACACTTATCCTT 3321722 36 97.2 36 ..................G................. GTCAAAAGTTAAGCTCATTTGCTTTTTTCCTCTGTT 3321794 36 88.9 0 T...................TC........A..... | ========== ====== ====== ====== ==================================== =========================================== ================== 11 36 98.7 37 GTCCCCACTCGCTGGGGACACTAATCGAATGGAAAC # Left flank : ACTAGTTAGATAATCTTGTCATCTGTCTAAAGATAGATTGTTTAAAAAATAAATTTTTTACTACTGGAAACAGCAAATAGGCATGAACTTGCTAGTTGAAATACCTTTCCACTCCCTGGGGACACCAATCAAATAACAACAAACAGGCTACGCGCCTGTACATCCCCAACCGCCCGGAAATCAATTTCCGGGCTAATAGCGGAAATCGGTTGAAACCGATGAGAAATTGTCTGAATATTTTCATCAATCCTCTTGGGAGGATTTTCGCTTTCAGACGGGGAATTCATTCCCCGGATTGCTAGAATGCACTAGCAACCCGCCACGGAGGTTCAATCAAAATCGCTGAAATGATTATTTTCCCGTTCCGAACCTCGGTCGCTTGCTATGTAAGAGTTTCAGCCGTTTAATTACTATGCTAAATCCCATTTCAGCCGTTAAGTTTCTTGAACCTCGGAAAGTGCCTCTAGACTTCTTACTGGGACTGTGTTTAAAATGGAAGG # Right flank : CTAAAGCCAAGCGTTTGAACATTTTCATCAATCCTCTTGGGAGGATTTTTGCTTTCAGACGGGGAATTTATTCCCCGGATTGCTTACCAAAAGATGTATAATAATCTTCTGTTTATTATCGCGAGAATTTTTCTCGCTTTTTTTTTGTATAAACAGCACGTGGAGGTTACCAAAAGCCAGTGACTGACCTTGCAGCAGGGGAAATCGTCCGGGTGCGATCGCGCCAATACCTAATAAATTTATCCCCAGAAATTACAGAACGTTGGAAAGCAACTAAAAATGTGCTTAACCAAGGTGTTGACTCAATAGCTAACTCAAAACAGCAGTTTAGTGAGTCTTTAAAAGCAACAGCAAGTAAACAGACAGGTGAAGTAGTTGATACAGTTATTAATACTTTCCAAAAAGTTAAAGACTCTGTAGACGAAACCTTGCAAAGTGCTGAACAAATCAAAAATACTACATCATCAGCATTGCAAACTGTTGTGACTGATTCTGTAAAT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCCACTCGCTGGGGACACTAATCGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 8 3926757-3925465 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP063311.1 Anabaenopsis elenkinii CCIBt3563 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 3926756 36 100.0 38 .................................... AAATCTCTATCCTCTAGACTACCAACAGTTAACATGAG 3926682 36 100.0 35 .................................... AGAAAAAGGAAAAAGAAAGGCAAGGTTGCTGTGAC 3926611 36 100.0 37 .................................... ATATTTCTATCAATAACTCTAAGTAGTCGTCTGATTC 3926538 36 100.0 36 .................................... TTAGTCTTTCTTTAGCCTCTTTTTCTGCCTTAGCTC 3926466 36 100.0 34 .................................... GAAGAGGTGAAGAGTCTGCGGTGTAGTCTAAAAT 3926396 36 100.0 44 .................................... CTGTGTAGGCTCCTATAGCCCCGTAAAAGTCATTGGATAGATAT 3926316 36 100.0 40 .................................... GTAAGAGTTATAACCCACCGGCTCGACCAGACCTGACTCA 3926240 36 100.0 38 .................................... CACGTATAAATGTTCTTTTAAACCTACAGACTCTGCTA 3926166 36 100.0 40 .................................... AAAATGGGACTAGCCAGCACCTTTATGTAAAGTGCTGGTT 3926090 36 100.0 42 .................................... GCATTCCTTGTTCTATGCCGGTCGAAACTCCGGCTTCCCAGG 3926012 36 100.0 40 .................................... ACGCTCGAGCGTGTTGATAAGCCGAGTCTTGTCAGCTTGT 3925936 36 100.0 39 .................................... GTTTCCACAGCCTTTGCTGCTCTACCCTCCATTCAGTAT 3925861 36 100.0 34 .................................... CATCTACTAGCATGGCTCCCAATTTTTTATATCT 3925791 36 100.0 36 .................................... AATTTAAGTCCTTTAAAACTTCAGCAACTGAAACTC 3925719 36 100.0 32 .................................... ATCAAGGTTAACCCAAACGGTCTAAGAAGACT 3925651 36 100.0 37 .................................... TCGTCTTCTATGGTGTAAATTCCTGGAGTAGCTGGAA 3925578 36 97.2 37 ................................C... TATTCATCGCGATCGCTCGATTAATGTCAAAAATCGC 3925505 36 83.3 0 .AC..................C..G....A..C... | T,GGC,G [3925467,3925471,3925477] ========== ====== ====== ====== ==================================== ============================================ ================== 18 36 98.9 38 GTACGCTTCCCTCTGGGAAGTGGAATTAATGGAAAC # Left flank : AATAAATCTGTGATTGCCTTGAAAATACTAGATTCATCAGCATTTCCTGAGTGGTGTACCCAGTTACCTCCAGAATGACTATCTGTAATAGCGATCGCACTAAACCACCGGAATCACTATCTGTAATACCGATCGCATTCACCCACCGGAATTACCATTTGTAATAGCGCTCGCATTCAACCACCGGAATCACCATCTGTAATAGCGCTCGCATTAGTTGCACTCATGACTACCGTTTCAGCTGACATAATAAATATAAGGTCATCAGGCTATATTACCACTGGGTTACCTACCGGATCGAGGTATGGCTAACTCCATAGGACGGAAGGTCAGGTAAAATGGCTGGAATAATGATTCTTCTGTTTTGAACCTCGGTCGCTTACTGGGTAAGGGTTTCAGAGTTTTTACTACTATGCCAAAGTCCATTTCAGCCGTTAACTTTTTTGAACCTCGGAAAGTGCCTCTAGACTTCTTACGAGGTAAGGGTTTAGAATGGAGGG # Right flank : CTTTTTCCTCACTGCAAAACTCCCATAGTGTTTATGGAAAAGCAGATTTTCAACACAAATTAATATCCCAGGTTGTGGAATGTGTTAAACCAAAGGACAAGCATTAAATATCCATTTATGATAATTTTACAGAGTCACCGGTTTTAAAAATATATTTTCCCCAAAACTCTGGTATTATTGCACCGGAAACACCAGTTTCAATTTTTCAATCTCTGATTATGAGAGGATCTTTGGAAAGTATTAAACAGGTAATTTTTATATTAGGGAACAGGGAACAGGGAACAGGGAGCAGGGAGCACCGAAGCACCGAAGCACCGAAGCAGGGAATGGGGGACACTCCGAAACAATAAAATCCAGTCCCCTCCCCTGACAAGGACAAGACTTGGTGGACAAGGTGGACAAGGTGACAAGGGAGAAAAACAGTACAAAGTCTGTATTTTTAGTAAGAAAAATAGCCCCTTAAAAGACCATTGTCCGTATAAAATCTTCCTTGTCCACTT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTACGCTTCCCTCTGGGAAGTGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //