Array 1 54975-55534 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTJB01000003.1 Thermus sp. 2.9 contig03, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 54975 36 100.0 40 .................................... CTTTGAAGCCTCGGATTTTGCGCTTGTCTTGACTCGTCAA 55051 36 100.0 41 .................................... CACTTGATGGCCCCGACAAAGGTTAGGGCCACGCCCGGATG 55128 36 100.0 39 .................................... CTAGCGCCTCCACCGCCTTCCAGAACTCATCCCACTCTT 55203 36 100.0 36 .................................... CGCGCCCTCCGGCAGTCTGATGGCGGCCTCTATCGT 55275 36 100.0 43 .................................... GACAGAAAGAACTTATGGCCTCTAAACATTCGTCCTCCCTACA 55354 36 100.0 37 .................................... GCCTTGGCCCAGCTCCGGGGGGGACGGTGAGAATCGC 55427 36 100.0 36 .................................... TCCAGGTACAGCTCACGCTCCCGCTCCCAGCGTTTT 55499 36 91.7 0 ................................A.CT | ========== ====== ====== ====== ==================================== =========================================== ================== 8 36 99.0 39 GTTGCACGAGATGCTTCCCCGCAAGGGGATTGCGAC # Left flank : CCCTCTTCCAGCGGCACATCGCCCGGCTGTACGCCGGGGATGAGGCGGGGTAGAGAAGGGCGTAGCCCGGTTCTGAAGGGAACGGGGGCCTAAGGGGGCGATTTGGCGGGTTGGGGGATGGGCCCTTACTTGCGGATGAGATAGCTACTTCCGCGGTTCGCCTAGATTTAGGCGCAAAGGCGCGTTTAACACTTTCTCATAGTGTAGTGAGCTCCGCAAGGTTTTTTCTGTCGCAAGTATATACTGAGTGCATCGTTGCGCTCATCTGCTATAATGGCCTTGTCCGAGGGTCGGACAGGGGATCTTGAAAGCCAGTTTTGCCCTTGAGGAAGGCGAATATGCGCTTTCACCTTCTCATCGCCCCTTCCGCAAGTAAGTTTTCATCGGGCTAAACCCCCAAAAACGGCCTTTATACGGCTTATGCATATTCCAAACTTCATCTTTCTCACAAACCCCCCCTCCAAGAGCAACGTCCAGGACGGGATTATGAGAGGGGTACA # Right flank : TAGTGCCGGGCGTCGCCTCAGACCCCTACCCGCCACTCCAGGGTGTAGTCCCCAATGCGGTAGGGCCTGCCGTAGGCGGCGTAGGCGTCCAGGATGCCCTCGAGGGCCATCTCCGCCCCGTAGAGGACCGCGCTTCCCAGGTCCAGCATCCGGTCCGCGCGGGTGAGGGTGAGGCCGTCCCACCCTAGGGCCTCTAGGAGGGGGAAGTCCGCCAGGAGGCGGGCGGTGAAGTAGAGGGCCAGCTCATCCCGCTGCCCCGGGCTTTCCGCCAGGAGGAGGACCTCCGCCACCGCGCGGAAGGTGGCGGTGAGGTCCCGATCCCCGAAGGCCCGCTCCGCGAGGGCGTAGCGGGCCTTGATGAGGGCTTGGGGAAGGGGCTTCTGCTCGTGCACGTGCTCTTGGAGGGCCACAAAGACCCCCCGGGCCTCCCCGTGGAAACGCAAGCGCTGGTACAGCACGCGCTTCACGTCCAGGACCAGGCGGGCCTCCGCCTCCCGCCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACGAGATGCTTCCCCGCAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 6466-6737 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTJB01000054.1 Thermus sp. 2.9 contig54, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================= ================== 6466 36 100.0 39 .................................... ACCGGATAGTCTACCAGGGTGAGCACCTTCGCTACCTCA 6541 36 100.0 45 .................................... CCACCCTCTGTATTGGCTTCCAAGCGAAGCCTGGTGAGAAGTAGT 6622 36 100.0 44 .................................... TGCCCGAGTGTCGGATACCGGCCCCTCTAGGCGAAGCTCCTTCG 6702 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================= ================== 4 36 100.0 43 GTTGCACGAGATGCTTCCCCGTAAGGGGATTGCGAC # Left flank : GGAGGAGCGCTTTTTGGAGGAGGCCACCCACCCCATGGGGTTGCGTAAGCCCTACGGGGAGCTGATAGAGATCCAGGCCCACCGCTTGAAGGCAGCCATATTGGGGCGCAAGCGGTACACGCCGTTTTACCTTTGGCGCTGATCTTTGCTATACCTATGAGCAAAATTGCGACGCAAAAAGGACACCTGACGCTTTAAAAGACATAGCTCGCTTCGGGACGGAACTTGCGCGATATCTTTGGACTGAAACAAAACTTGCTGTGCGTGCTATACTGCGCTTAGCCCGGACCCCCGGGCGGGGATCTTGAAAGCCGATTTTTCCCTTGAGGATGGGCAGTATGCGTTTTTATCTTCTCATCGGCCTTTCTTCCTGTGGCTTTTCATGGGCACAAACCCTCAGAAAGGGCCGTTATACGGCCTATGTATATTCCAAACTTCATCTTTCTCACAAACCCCCCCTCTAAGAGCGATGTCCAGGACGGGATTATGAGAGGGGTACA # Right flank : CAGGATA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACGAGATGCTTCCCCGTAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [46.7-6.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 1 2641-3339 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTJB01000061.1 Thermus sp. 2.9 contig61, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2641 29 100.0 32 ............................. TACGACATCAACCCCAATAAGAGCTACAGTAA 2702 29 100.0 31 ............................. GGGGCCAAGCCGCTGACCCTGAAGGAAAGGC 2762 29 100.0 31 ............................. GCGTGGGCGCTTCACGCCACCTGGCTGGACC 2822 29 100.0 32 ............................. GAGGCCGGTCACTTCCCCCCGAGGTCCCTGGA 2883 29 100.0 31 ............................. GACGCCAGTCCCGAAGCCGTTTACGTCCCCC 2943 29 100.0 32 ............................. CCCTGGCCGAGTAGCCCCACCTCGGAGGAAAA 3004 29 100.0 32 ............................. GTGGTGGCCCAAGGCCACCTGGCCCTGCCCCA 3065 29 100.0 32 ............................. AAAAACAAAGGCGCGCCAGCATGGAGGCCCTC 3126 29 100.0 32 ............................. GACCGCCTCCGCCTCCTCCTGGACCTCCTCCA 3187 29 100.0 33 ............................. ACAAGCCCAATCCCTAGCGCCGTCCATCCGCCC 3249 29 100.0 33 ............................. GAGGGGAGACGGCAGAGCGATAAAGCTGGGTGC 3311 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 12 29 100.0 32 GTAGTCCCCACACGCGTGGGGATGGACCG # Left flank : GAAGACCTGCGTTGGGAAGAAGACGACCCTACCCAGCCCGGAGGTCTTTGGGACCCGGAGGGTGTGGTAGAGGGGGGCGTGGCCTATGGTGGTGATGGTGCTGGAGAAAGTGCCGAGGAGCCTTAGGGGAGAGTTGACCCGTTGGCTCTTGGAAGTGGATACGGGGGTCTTTATCGGGCGCGTAAACGCCACAGTACGGGAGCTTCTTTGGGCCAAGGCGGTGGAAAAGGCCGGGGACGGGCGATGCGCCATGGCCTGGAGAACCAACACCGAGCAGGGCTTTGCCCTAAGGCTCCACGGGTACGTAGACCGGCACCTTCGGGATTTTGATGGTATACTTCTCGTGACGGTGCGCAACGCCGAGGCGATTCGTAAAGCCCAAAAGCTACAACGCCTCAAAGACGGCTTGCGCGGGGATCTTGACAAGAAAACTCCCGAATAGCTCCCTTTTTAGACACTTAGAGGGGGGTAAGGCGGGGTTTTTAGCGTCCTGGTCAAGT # Right flank : GCGTTATGAGTGGCGCATGACCCAGAAGACCTTTCTTAGTCTGGTGTTCCTGGCCGGTATCGGCGTGTGGTTCGGGCTTCAGGCGTTGCATGGAGATAGGCTGTCCCCACGTGGTGTGGATGTTCTGTCTTCCACGCAAAACCACGGGGCGTCCCAAAAGGACGTGCTGCCTCCATGTGCTGGAAAGATCGCGTGGCTGACGCGCGGCGGCCAGGAGGTGCGCTTTTCCTACGAGGGTGAGGCCCAAACCATACGGATGGAATGGCCTGGCGGGGCGTACGAGTCCAGCGTGGCAGACGCTTGCACCGGAACAGAGTGCCGGGCCATCCTGCCGCGCCCGGACTTGGGGACGTTCGGTTGCGGTTGGACTCGTGCCCGTGGGTGGAAGCGCCTTGACACCTAGACGCGTGCGATGGCGCGGTTGATGGAGTTGTCAAGGACGCCGGGTCTACGAGTTCAATACCTCAAAACTTGCACTTATCTACTCCCCCTCAAGGATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACACGCGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTAGTCCCCACACGCGTGGGGATGGCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 238-53 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTJB01000062.1 Thermus sp. 2.9 contig62, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 237 37 100.0 36 ..................................... AGACGGTACGCCCGCCCACCTCTGGTGTGATGTCGG 164 37 100.0 38 ..................................... GGCGATTACGCCACCAACGTCCCGGGGTACGGGACTTT 89 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 3 37 100.0 38 GTTGCACGAGATGCTTCCCCGTAAGGGGATTGCGACT # Left flank : GAGGCCAAGGGCAAGGAAAGGGGCCTACCCCACCACCTTCGCGCTCACCCAGTAGAAGCGAGCGCTTCAGGGCCCAAGCCCACCGCCTGAAGCGGCGAACCCGGGGCGATGGCTTACACACCCTTTTACTTACGGGCACGGTAGTTGCTTCCACTATTAGCCTTTTTGCGATGCAACTGGCCCGTTTATCACTTTTTTATAGTGAAGCGATGTCTGCAAGGGCACTGTTGCGCTAAACCTGTACTCAGATTATGCTTGCTGTCGTCTGCTATAATGGCCTTGTCCGAGGGTCGGACGGGGGATCTTGAAAGCCAGTTTTGCCCTTGAGGAAGGTGAATATGCGCTTTCACCTTCTCATCGCCCCTTCCGCAAGTAAGTTTTCATCGGGCTAAACCCCCAAAAACGGCCTTTATACGGCTTGTGCATATTCCAAACTTCATCTTTCTCACAAACCCCCCCTCTAAGAGCGATGTCCAGGACGGGATTATGAGAGGGGTACA # Right flank : TAGCTATATCCTCGGCCTTAGGGGTAGCCTCGGCCTCGGGTTGCACGAGATGC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACGAGATGCTTCCCCGTAAGGGGATTGCGACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA //