Array 1 49405-50733 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXLW010000012.1 Listeria monocytogenes strain F4233 NODE_1_length_628391_cov_37.9161_ID_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 49405 29 100.0 37 ............................. CAATGCTTAAACCGAGAGCATCAAATTGTTCCCATGC 49471 29 100.0 36 ............................. ATTACAGTACAAGCAAGGGTTATTGAGTTAAATATT 49536 29 100.0 35 ............................. ATTAATGATAAGAGCGGAAAGAAAACTTTCAAGGG 49600 29 100.0 37 ............................. TCCCCCTTAAGATACAAACTCGATTTGACAGGTGCAG 49666 29 100.0 36 ............................. TCGTTTATGACCTTATGAAAGAGTTAACACCTCGAC ACT [49678] 49734 29 100.0 36 ............................. CTTCCTACTTTTTGACATAAAAAATAAGCCGAGTTG 49799 29 100.0 36 ............................. AAGTTCAAAACCTCCCACACCCGCTATGAATAAATT 49864 29 100.0 37 ............................. TTCGTAATTTTACGATTATACTTTTTAGTCAAATTAC 49930 29 100.0 35 ............................. GTAACAAGTAGTGTTATACCTGCAACAATACCAGT 49994 29 100.0 36 ............................. TGGAAATGGGAAGAAAGAAATGCACTGATTGTAGAG 50059 29 100.0 36 ............................. GTCCACATCGACAATAAAAAACACATTGTATCACTT 50124 29 100.0 36 ............................. CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT 50189 29 100.0 34 ............................. TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG 50252 29 100.0 34 ............................. AGAAAAAAAACATCTTTCCAATTTGTTGTTTTGC 50315 29 100.0 37 ............................. ACAAGTGCTAGAACAGAAGTTATAATTTGAACATTAC 50381 29 100.0 34 ............................. AGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTA 50444 29 100.0 36 ............................. TATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGA 50509 29 100.0 37 ............................. AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG 50575 29 100.0 36 ............................. GTGTAATTCTTAATTCCGTATTGATTCGCTAGTTTT 50640 29 100.0 35 ............................. TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT 50704 29 93.1 0 .......................A....C | C [50727] ========== ====== ====== ====== ============================= ===================================== ================== 21 29 99.7 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : CGTCTTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACTCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTCTCCGCCATTCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGTGTCTGTACTTTCTTATTCGCAAGTAGTTCTTTCTCCACACCAAACGTCTTGGCTGCAAGGTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTCCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 551731-554279 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXLW010000011.1 Listeria monocytogenes strain F4233 NODE_3_length_559656_cov_44.1683_ID_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 551731 36 100.0 30 .................................... GCAATAGACCAGTTAGGTGTCACAGGTGCG 551797 36 100.0 30 .................................... GATAGTAGTATAATAACTGTGCTAATATGG 551863 36 100.0 30 .................................... TTCGTACCATAGTATACACATGCAGGGGCG 551929 36 100.0 30 .................................... CATATAGATGTTTCCTTTCTACTCGTATAT 551995 36 100.0 30 .................................... AAATATTATTCAATGCTGTAACTGTAAAAG 552061 36 100.0 30 .................................... TACTTTTATTGTCTGCTAAGAATACTACTA 552127 36 100.0 30 .................................... ATTGTACAAATTCCAAGTAACTCATCATTA 552193 36 100.0 30 .................................... TTTTTCACGTTTGTACTGTCTCTCCTCGTA 552259 36 100.0 30 .................................... TAACTTTAGATACTGCTAAAGAATTAGCAA 552325 36 100.0 30 .................................... CTTCAGTTTCACCTGTGAATACGCCGTTTA 552391 36 100.0 30 .................................... GCGCTTCAGTTTCAGCATTGGTCTTCTTAG 552457 36 100.0 31 .................................... TCTCTTGCATTTGGTTCTGAATAATCTCGTA 552524 36 100.0 30 .................................... AGAGCAATGTAGTCATTCAGCCAATGCCCT 552590 36 100.0 30 .................................... ATATGGGGGCTTATTGTATGGCTAATATAC 552656 36 100.0 30 .................................... ACGGGGCATTTAATGTTGGCAAGCGCAATT 552722 36 100.0 30 .................................... TCCTCAGATAAGGTTTAGTACGCAAGACTC 552788 36 100.0 30 .................................... TCCACTTCGACGCTGGACGGGCTCTCCTCA 552854 36 100.0 30 .................................... CAATGCTTGGGGCTATGATGGCATGGATAA 552920 36 100.0 30 .................................... CTCTTTTCGATATTCCGGAAGAGGTACTCC 552986 36 100.0 30 .................................... CTTTTGTGTCTTCGGTAGCTTTGTCCATTA 553052 36 100.0 30 .................................... CCAGAGTCGCTTTTTCTTCCGGCCAGTCTG 553118 36 100.0 30 .................................... GTGTGTTATCTATTTGTAGCGTGGGTGTAT 553184 36 100.0 30 .................................... ATATACAATGTCTAAGCTTAATCTTTCGGT 553250 36 100.0 30 .................................... GAAATAATATTGATAATATCGCTCTTGCTA 553316 36 100.0 30 .................................... AGTATTTATTATCTCTATTACTTTTGTATA 553382 36 100.0 30 .................................... CGTATTCAAAAGTATATCCGCTAGCCTCAA 553448 36 100.0 30 .................................... TAGGTTTAGGGAGTAAATTAGCTCCTTTGG 553514 36 100.0 30 .................................... GGTAAAACAAGCATCGGCGAAGCAGTAACA 553580 36 100.0 30 .................................... TCCTAAATCTGAAAACAAAAACTACGAGTT 553646 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 553712 36 100.0 30 .................................... AAAGCAATAAATCAGATCATAAAGGAGCCT 553778 36 100.0 30 .................................... CGACGGAAAAATTAGACGACGCTAATGTGC 553844 36 100.0 30 .................................... GGGCAACGATATTTGTAGATAACAGGGAGT 553910 36 100.0 30 .................................... TACGATGTTAAGCGGTGGAGTAGATCAGTA 553976 36 100.0 31 .................................... TATAGTCTGTTTTTTCGTAAGTGAGCAGCGC 554043 36 100.0 30 .................................... TTGGGCAAAATGACCGTAATAAATCCATTC 554109 36 100.0 30 .................................... TTAGCACTTATATAGAAGCCCCGCCCCTAC 554175 36 100.0 30 .................................... AGTGATGGGGAAGAGATTGAACTTATGTTT 554241 36 86.1 0 .............A.....C.....T.A.......G | A,A,C [554266,554272,554275] ========== ====== ====== ====== ==================================== =============================== ================== 39 36 99.6 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACAGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATGTAAGTAAAGAGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAGAAATGAAAACCGATATAACTTTTAGCACCATTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //