Array 1 376455-375957 **** Predicted by CRISPRDetect 2.4 *** >NC_002950.2 Porphyromonas gingivalis W83, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 376454 36 100.0 30 .................................... AAGACGTGTCGGCGGACGAGCTAATCGACT 376388 36 100.0 30 .................................... AAGACGGAGTACAGGGACGTTGTCCGCATC 376322 36 100.0 30 .................................... GGTAGCACATTCCTTGAACAAACCTTTATA 376256 36 100.0 30 .................................... TGGAGGTAAGGTCAAGAACCCGACCCTTGA 376190 36 100.0 30 .................................... AGAATTTGGTTATATAAGATATAGTCTTAT 376124 36 100.0 30 .................................... AGATCGAAACGGGTATGCCTTACGTCTATG 376058 36 100.0 30 .................................... TGGAGGCAAGATGTTTTACTTCGACAAGAA 375992 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 100.0 30 GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC # Left flank : ATCGTTTTCATTTTGTATATAAATCATTTTTAATTTATATATAAATCGATTGCGATAAATATATAGATTGTAAGCCCGATTTGATATAAATCGGACACCTCGAAAGGCCTTTAGGGGAGGTATAAATAAAGAGGCACCCACCGAGTTCCTGCAGGAACTCGGTGGGTGCCTCATCTATTTCGAAGGGGTACGAAACGGCTCTCAAGCTCTACCGCTCATACAGCAGGCTTGTATCAGCCATACGCGCCGGCATATAACCACACAGGCCGAACGAAACCGGCCGAATAAGAATGCAGGAAAGAGAAGGATCGGAGCACATATCTATCATTCATTTAGTCGTTTACAAAGTCATTCCATAGAAAGGGAAAGCTCTCCCCGGTACAAATTCACCGAAGAGGGGAGCACCTCGTCCGCCTGCAAATTTAGCGAAAAAGCCCCAACGAGGAAGAATCCCCACACTACTGCACATTCCAACGCCCAAGCCACCAATCAAGAATCAT # Right flank : CTACCCCCATCGAATTTGAAACCGATTGAGAAGTCATCATTCCACAGAAAGTGAGTGACGGTAAGGCTTTGGAGCCACTGCAAGCCGGCGAAAAACAGTCTGTCATCATCATTTTAGTGGGATATTAGGATTGAAAAAATGACTCTCTACAGTCGGGTTTATGCTATTTTCTCTCAAAAAATCATTCCTATGCTCCTGGCGGTTCGCACTCAAAAGTTCAACGTTCGCTTCTTCAGTGCGATGGCTTCTCTAACGGTTTGGGTAAGCTCCTGATGAATGCTGATCATCCGTTCGGCCGTTTCGGGCTTGTTCATCACAACCCTCTCATCCGAGTTCTGCCTCTCCGAAAGCAAAAGGCCGTAAACGATACTCCTATACTCAAAGATACGGGAAATAATCTCTTTAGACAAGAAAATACCGTTCCCATTCTTATAAAATTCGGCCGTCAGTTCGGACAGGAATCCACGGATGCAGGCCGGCCTGAAATAATAGGTTTTCGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.10,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 1244190-1243692 **** Predicted by CRISPRDetect 2.4 *** >NC_002950.2 Porphyromonas gingivalis W83, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1244189 36 100.0 30 .................................... TCCCATTTTTGAGCCAAATCTGATACAAAT 1244123 36 100.0 30 .................................... TACAACATCTTTAGTAATTTCTTTAGTAAT 1244057 36 100.0 30 .................................... GTTGTCCCAAGCCTGAACGGTAGCGTTGTC 1243991 36 100.0 30 .................................... AAACGCATCGTTATAAGTTTTTGTGATTGC 1243925 36 100.0 30 .................................... GTTGTCCCAAGCCTGAACGGTAGCGTTGTC 1243859 36 100.0 30 .................................... AAACGCATCGTTATAAGTTTTTGTGATTGC 1243793 36 100.0 30 .................................... ACCTTTTCTTCCACATCCTCAGGAGCAGGA 1243727 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 100.0 30 GTTGGGAATACCCTTAGTTAGAAGGGTGGAGACAAC # Left flank : CAAAGCTACGTTGGATGAAGTCAAGACTTTGTTGGGCGAATATGATCGCTGCCGCATCAAAATCTTCGATTGGGCATTTGCACTCGAAGGAGCCATCATGTCTGATCGCGACTTGAAGCCGTATTTGCACGAGTCGTCGAGCAGGGAGGGTAAGAGCGGAGAGCATTCTACACTGGTGAAGATGCTGGTGGAGAAGAAAGGCTGTCTGACTCCTGACGAAAGCCAATACCTGATTCTGATTCGCAACAAGGCTGCTCACAACCAATTTCCCTGCGCTGCAGAAATGCCTCTTATTTACCGAGATGTGAGTGCAAAGGTCGGTAGCATTGAGGGATCTTCTGCCAAAGATCTGCCGGAAGGTAGTTCTCTGGTAGATTCATTATGGAAAAAATACGAAATGATAATTCGGAAAATTCTTCCGATTCTCGACCCTGAAAATAGATTTTTTGGAAAGCTTTTGAATAATATGTCTCAACCTATCAATGACTTATAAAGGGTCG # Right flank : TATTATTCCGAAAGGAGAAAGAGGGGAGGTTGTGCTATTGATGGGGAAGTATTCCTAAATTAGCGATTGCTAAAGTGATGGAAGATGGATAGGAGGATCGTGTTCGGAGGAGAGGGCTGTAGCCGACAGTGTTTGTGTGCAGCTATCCATTCGATCGGGAGGCCTTTCGTTCTCTTCCTTGGCTTTTGTCTGTAAATCTCGATTCTTTTAACTCATATAATTGTCTGTTCCTATCATACGCTCTCATCTCCTTATCAGTGCTGCTTCATCGGGTGGTGGAAAGACTACTTTCACGCTCGGATTGCTACGATTGCTTCGAAGGCGCGGTCTCAAAGTGCAGCCTTTCAAATGCGGTCCCGACTATATCGATCCTAAGTATCACCGCCTTGCATGCGGAACGGAAACGGTGAATCTGGATGCTTTCATGATGAGTCGGGAGCATATCGCCCGACTCTATGATCGCTACGGCAGTGAAGCCGATGTTTCTATTGTGGAGGGAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGGAATACCCTTAGTTAGAAGGGTGGAGACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 3 2068905-2068360 **** Predicted by CRISPRDetect 2.4 *** >NC_002950.2 Porphyromonas gingivalis W83, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 2068904 37 100.0 36 ..................................... TCACTGACCATGAGGTAAAGTACCCATTCTATCGGA 2068831 37 100.0 37 ..................................... TGTTTCGCCATGACTTAATAAGTTTTACAATTTTTGA 2068757 37 100.0 38 ..................................... TTGTGAGTATAGGGCTTTTCTACTCCTTCTTCCTCAAT 2068682 37 100.0 34 ..................................... GACAGCGGGGTTTTTGCTGAACCAACTCCCTGCA 2068611 37 100.0 36 ..................................... TTTGATAAGTTTGGTATCCAATTGGAGAGTCTAATT 2068538 37 100.0 34 ..................................... AGATTAAGAACATTTTATAAGTTCAATTAATTTT 2068467 37 97.3 34 ....................T................ ACAAATGCTTGTTTTTCTGCTTTAGTAATACGTT 2068396 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 8 37 99.7 36 CTCACTATACATACACAGTCCGTAAGGCTATTAAGAC # Left flank : TTTTCTTCCTCTCTGTCAGCATTGTTACACCGCTGCTTGGATGAGCGGACATCCGACCCTCCCTAAGAGCCGGAGAAAAAGGAAAAGTATTGTGGTTTAGTTTTTCGAAAAAAATCGAACCTCACATCGCTCTTTGACGTATTGATTATCAGTCGGTTGCAAGAACAACTCTTTTCTCCTGTTTTTCGAAAATAGGAGAAAAGGAGAATTGGGACTTTTATTTTCGAAAAATAGAGGCTTTTCGCTATTTGTAAGTGTTTGATTATCAAACGGTGTCTTTCTCTATTTTTCGAAAATCTAAAAAACGAAGGCTCCCTCTTTCTTATTTTCGAAAACGGAAAATCAAGAAATCTCATTGTATATCAATGAGATATAATCAACTCAACTGCAAAAATAGTGTTGTAGCTGCATTTCTCAACTTGTATTTTCGAAAAAAATAGAATCGTTCTCTGCCAATGCGTTACGTTTGGGATTATTCGTAACTTGCAGTCGCTCAAGTA # Right flank : ATTGATTACCGAGGGTTAGAACGAACGCATACACAGAGTGTTCTGGAAGCGATGGCCTACAATCTTAAGCGCATGCCCCCGGGCTTCTGTGCTCTATGGCGTGAAATAGACGAAAAATCTCCCCATTCGGAGGCTTAAACCTCCGAATGGGGAGTAAAGGGAGAGTCCAACCGATAGAAAAACAACAGCAAACAACTCAAAACTTCCTTCGTATTCACACATCTACGAGGATGCCAAACGCACAAGCGAGTTGTGTAGCGGTCTTATAAAAGTGGATAACGGACTCTTTGGAGAAGACTATCCACGCTCTGAAAAACGTGGCGCGGGAACTTTTTCGTTTTGGTTCGGGAAGTGAAAAATTCTCGCGCCACAGCGAAAAAATTCTCGCGCCGCTTTTCCCGAAAACACGCTCCGCAATCCGAGCATTTCCGGTCTGTGAACTTCGGAGAGGCGGATTTGTCCGAAAAGGAAAGTTCGGTCGTTTTCGGGGGAGGGGACAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCACTATACATACACAGTCCGTAAGGCTATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.80,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 4 2102526-2104069 **** Predicted by CRISPRDetect 2.4 *** >NC_002950.2 Porphyromonas gingivalis W83, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 2102526 30 96.7 36 A............................. CTTCGATTGGCCCGTAAGGGAATTCGCAGCCAAAGC 2102592 30 100.0 35 .............................. GATCCGATTCGTCTGCGTCGTCGAGCATAAAGGCG 2102657 30 100.0 35 .............................. AAAAACGACAGCGTGAAGTCGCCGGAGAGGCTGAT 2102722 30 100.0 35 .............................. AATAAAGCAGATTGGGAAAATCCTATATGTACTTT 2102787 30 100.0 37 .............................. TAGGTTAGTAAAATAGAGGTGTTCGCCGTAATATACT 2102854 30 100.0 37 .............................. CTGCAAACTCGTACCTATCCACTGCAGGCTTGGCTTC 2102921 30 100.0 37 .............................. AGCTATAACCCTCGATGAGTACTACGAGGGAAATGGC 2102988 30 100.0 36 .............................. GAAGTAGTTCTCGCTCGCTACCGAGAACGCTTCTTC 2103054 30 100.0 34 .............................. TTTTCAGTCGGTAGCGAAAACTACTTTTTATTTC 2103118 30 100.0 35 .............................. AACGCATTTTATGTGCGCCAAGATAATTGGGGCAT 2103183 30 100.0 37 .............................. TTACGGCAAAAGGGTTTAGATACCTAATGGAAAAATC 2103250 30 100.0 35 .............................. CATTTTTACAATGGATGCCGAAACCGACAGTCTAA 2103315 30 100.0 36 .............................. AAGAAAGAAGAAAGAATAAGTAGAAATAAAGATGAT 2103381 30 100.0 37 .............................. TAATGTTACACAATGGTATACTGATGATGGTAAACTT 2103448 30 100.0 37 .............................. TTACGAATATCTAACGATGATACTATAGTGCAGTTTT 2103515 30 100.0 37 .............................. TAAATCAATCAGACAGTATCAAATGAAGTGCGGATAC 2103582 30 100.0 35 .............................. CTATAAAAGAAATTCCAAGAGAGCATGATTCTGAG 2103647 30 100.0 35 .............................. TTAGCAGACGAAGACGATTTTTTCAATGTAGTAAA 2103712 30 100.0 36 .............................. ACAAGATGGTAAAATGTTTGCTAATCTTAAAACTTT 2103778 30 100.0 36 .............................. GATTCTCTATATGTTCAGTTCAATACAATGCTGAAA 2103844 30 100.0 36 .............................. AGCGTATTTCGGTCTATCTCGTAGCGTTCGAAAAGC 2103910 30 100.0 35 .............................. ATGATAGAGGAGATAGGACTCGCGCTCACCGATAC 2103975 30 100.0 35 .............................. CTCCCGGGTTGGGCAGCACGGCTTTGAGGAATTGG 2104040 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 24 30 99.9 36 GTTTTAATTCCTGTATGGTGCAATTGAAAT # Left flank : GTGGTCGGGAGATACCTCTTCCATAGCCCCAAGAATCGGGAAAAGGTGATTGAATCATTGATGCGCTCCTCCAAAGCACAATCACTGAGGTTGTACCATGTCTCCAAAAGCAACATCTTGAATAAGAGAATCACGTCATAAGCCGGGGCGCCGATGGCATTTTGTCGCTTCGTGTATTTCTTGTTGATCAGCGTCCTGATCGGACGCCAATCGATAAGCCTGTCAACCTGATTGAGGAAGTCGTTTTGTGCTTTGCGATAACGCTTTGAAAGGAGTGCGTCTGCAAATGTTACATGCTCATCGGTATTCTTGGATTGGTATGCCATGGGAGGAATATTATGCTGTTTTTAATACTCAAATATACAAAATAACTCCCTACTATACAATCAATTAACAAACAAAATATACGCCAATCGCCGTGCAAAGGTCTCTATACCTAAAAAACAAGCCAAATAACCCCGAAACTAGTTGTCAGTTTTTGGGAGTAGTATAATGGATAC # Right flank : TCCGTTACAAATATAGGCTTTTCTGTTTGAATGTGAGGAGTTTACGAAAAGGTGAAACCCAAAATTCAGACATTCATAGTTGTCGATGTCTGATTCTATGAAAAACCAAGGGGTGTGACGACTGATATATTTTATTGATTATCAATCATTTCAAAGATCGCCGGAGGTTAATCATGGCAAAAGGCTTGATGAATTTGCTCGAGCCGACGCTTCAAAAGATAGATAGCGGGAGCTGTATCGTGCTGTATTATAGAAATATATCCGTTGCAGAACGCTCTTTGCCAATTATTTCTTTTTCCAACCAACGTTCTTGTCTGGAAGAAAATATGATCAGACTATCTTCTTCTTTTTCCATAATTCCGGCTGCTCTGCTCTTCAGCTCTAAGAGCTTGACTTCCGATATTTCCCCCTCGAACACAGAGTTCTGAATCCAATTCAGATATTTTCTGCACAGTTTTAACATTTTGCCAACACGCTTTTCACCGATATCGTACACTAAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTCCTGTATGGTGCAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : NA //