Array 1 16643-15090 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYGX01000011.1 Salmonella enterica strain BCW_5899 NODE_11_length_104916_cov_1.86147, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 16642 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 16581 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 16520 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 16459 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 16398 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 16337 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 16276 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 16215 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 16154 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 16093 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 16032 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 15971 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 15910 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 15849 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 15788 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 15727 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 15666 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 15605 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 15544 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 15483 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 15422 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 15361 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 15300 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 15239 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 15178 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 15117 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 26 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1043-1682 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYGX01000059.1 Salmonella enterica strain BCW_5899 NODE_59_length_22335_cov_1.76951, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1043 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 1104 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 1165 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 1226 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 1287 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 1348 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 1409 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 1470 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 1531 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 1592 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 1653 29 96.6 0 A............................ | A [1679] ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //