Array 1 10994-12537 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZDI010000069.1 Salmonella enterica isolate 2408_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 10994 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 11055 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 11116 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 11177 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 11239 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 11306 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 11367 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 11428 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 11489 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 11550 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 11611 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 11672 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 11733 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 11794 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 11856 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 11959 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 12020 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 12081 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 12142 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 12203 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 12264 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 12325 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 12386 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 12447 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 12508 29 96.6 0 A............................ | A [12534] ========== ====== ====== ====== ============================= ========================================================================== ================== 25 29 99.7 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 317385-319365 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZDI010000044.1 Salmonella enterica isolate 2408_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 317385 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 317446 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 317507 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 317568 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 317629 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 317690 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 317751 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 317812 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 317873 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 317934 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 317995 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 318056 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 318117 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 318178 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 318239 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 318300 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 318361 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 318422 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 318483 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 318544 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 318605 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 318666 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 318727 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 318788 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 318850 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 318911 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 318972 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 319033 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 319094 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 319155 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 319216 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 319277 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 319338 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //