Array 1 129839-132888 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHONZ010000009.1 Alistipes shahii strain DFI.3.10 GDILKNED_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 129839 36 100.0 29 .................................... CGCTTGTGCGTGCCTTTTCCTAGCCAAAC 129904 36 100.0 30 .................................... GAACCAGGAGACAGTTCTGTTGTATTTGAA 129970 36 100.0 30 .................................... ATTCGTCGCTAAAGGTCATCGTCATAAAGA 130036 36 100.0 30 .................................... CCCTTGTCGCTGCATTCCGACCGCGTAGAA 130102 36 100.0 29 .................................... AAAACAGAATCGATCGCAGGGGCAGAGAA 130167 36 100.0 30 .................................... AAGTGGCATGGCAGGAGTACATGACCAACA 130233 36 100.0 29 .................................... GTATCAGCGTTAGCCCACTGAACAGGGGG 130298 36 100.0 30 .................................... GCGACGACCCAGACGATCGTTAAACGCAAT 130364 36 100.0 29 .................................... ACAGTAACAACGGGATAACCGTCTCCAGA 130429 36 100.0 29 .................................... TATATCCAAGATACTTACCTGTGTTACAA 130494 36 100.0 30 .................................... AAAAAGGCTATTAGAGGGAGCTGTCGTGTG 130560 36 100.0 30 .................................... AGCAAGAGCATCAAGATGAAGCGTCTCGAA 130626 36 100.0 30 .................................... GATGTAATCGACACGCACAGTATCGATGTG 130692 36 100.0 30 .................................... ACACGGTCTCGAGCATTAATAAAATCGATT 130758 36 100.0 29 .................................... GCAATAGCAGTCGGGTCACCGACAGGTGG 130823 36 100.0 30 .................................... CCACGGGCCGTTTGCATCATGCAACGTACC 130889 36 100.0 30 .................................... GCGAGCGTGCGTCTCGTTCCTGCTCACGAT 130955 36 100.0 29 .................................... TGACCGAGGGCACCAGTAATCAGGCCGGT 131020 36 100.0 30 .................................... TCCGAATAACGATTACCTCCAGCGCCAAGA 131086 36 100.0 30 .................................... AGGGCGAGGCATATAGCCAAGAAAATCACC 131152 36 100.0 29 .................................... GCCGGAAACAATCGGGGTATTGGGCGAGG 131217 36 100.0 29 .................................... CCTTGGGATGTTTCGCGCCAATGGTTAAT 131282 36 100.0 30 .................................... GAGCAGAGTTTCACAGAAGCACAGAAAGGC 131348 36 100.0 29 .................................... ACACGGAACAAGCAGCCACTGGCGGGCGA 131413 36 100.0 29 .................................... CAGTAGACGTAACATAATCGTCAGGCAAC 131478 36 100.0 29 .................................... TTGAGAGACATCGAAACTTTGAAGGATCG 131543 36 100.0 30 .................................... GACACACGTTCACGTTGTTGTTCGCCGCGT 131609 36 100.0 30 .................................... GGCGGCGCGAATGGTATTGTACAGAACATT 131675 36 100.0 30 .................................... CTCCAGCCAATCACTGTAGCGGCTACCTCC 131741 36 100.0 29 .................................... TTAAGAGACATCGAAACCTTAAAGGCGCG 131806 36 100.0 30 .................................... TTGAGTCGCAACCGGATAGCCGTCACCGGA 131872 36 100.0 29 .................................... GACGCAAGCAATCTTCACACTTCCCACAC 131937 36 100.0 29 .................................... CTCTAACAATTCACGAACTCTTGCAAGAG 132002 36 100.0 30 .................................... GCAGCGGCATTGCGACTAACAGTAGATTGG 132068 36 100.0 30 .................................... AACGCGGGCGCATCTTCGAGTAGCCAATCA 132134 36 100.0 30 .................................... TTTGAATTTTTTGTTGTTATATTTGCGCTG 132200 36 100.0 30 .................................... GCAGCGGCATTGCGACTAACCGTAGACTGG 132266 36 100.0 29 .................................... TGGAAAAGAAAGTATTTATAGTAACGCGA 132331 36 100.0 29 .................................... CAACCCATCCTTCATGGATGTGGTCATCT 132396 36 100.0 29 .................................... CGTTACGCGTAGAGATTGATTGCGAGAAA 132461 36 100.0 30 .................................... GCTTTTTTGCGTTTGTGCCGCCGCCGGGAG 132527 36 100.0 29 .................................... GCTATGGCACAGAAATCATCGAACAAAAA 132592 36 100.0 29 .................................... TTTTTTTTATTCGGCAGATAGCGTGGATT 132657 36 100.0 29 .................................... AGAGCAGAATTAGGAGTGGTCGTCCCGGC 132722 36 100.0 30 .................................... ACCTTGGGATGTGGCTCGCCAGTGGCTCAT 132788 36 100.0 29 .................................... ATAAAGTAAATTGTATACATTTGCAGTGT 132853 36 97.2 0 .......................A............ | ========== ====== ====== ====== ==================================== ============================== ================== 47 36 99.9 30 GTTGTGGTTTGATGTAGAATTTCGATAAGATACAAC # Left flank : AAAGATTGCATATCCTTTATTGGAGTAGTCGAATGTCAGAAGTACGCTTGAATGCTTATCGAATCATGTGGTTGTTTGTCTTTTTTGATTTGCCAACCAATACAAAAACGGAACGACGTCATGCGGTGCAATTTCGCAAGGCGTTGGAAAAAGATGGTTTCACAATGATGCAGTATTCAGTCTATGTGCGCCATTGTGCATCGAAGGAGAATATGCAGGTTCACATTAAGCGGGTTCGACGATCGATGCCTCCGACAGGATTTACAAGTATTCTTGCTGTAACGGACAAACAGTATGGAGACATATTAAATTTTTGGGGTAAAAGCGAACGAGCAAAACCGGAAATTCCGCAACAATTGGAATTTTTCTGATAAATCGTTATTTTCGTTCTTTGAAATACGGAAAATGCATCAAACTGGCTTCGTCGGAACACCCGATCGTATTTTTATAGTGGCAGACAGCCCGTAAGTAACACTTTATCAATCAATATGAGGCCCGAC # Right flank : CCGGCAGTATTGGAATGCTGCATAATTGCAACTGTTGTTTACATTACCCTTTTGACTCAAGAAGATTTCAAACTCCCTTAAATACGTCAAATCCAATTCATCAAAACGCATATTGACCGAGCGGAATTGCGACACAAGGACCAACGTTACCTTATGTTTGCTGGCGGAACTGTACTTTTCGACTTTTTCCAAGCGTTCGATAATCTGTTTGAAGTACTCCCCGACCGTGCAGTTGATTCGTTTGCCGTTCTGTTCAAACAGCGTATCGAATGTAACGGGAATTTCCAGCACCTCCAACTTTTTGATTTTCTTCTCGTATTCACGTATCTTGGAGGTTATTTGAAACTGTATTTCTGCTCTATCGGGGCAGTCGGCGGTAGGTTGTTGCTTGTCGAAATCCCAATGCACCAAAGCTTCCGAAATGCCCAGACCGACGAACTTACGGCGGCGGTCATGGGTAAAGACAAGAGCAAGAGGGGCTAAACGGTTTCTGTTGATAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGGTTTGATGTAGAATTTCGATAAGATACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //