Array 1 5188-2411 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRNE01000080.1 Corynebacterium freneyi DNF00450 contig80, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5187 29 100.0 32 ............................. CCGGCGCATCCGGTGGCAGTGTCGATCGAGTC 5126 29 96.6 32 ............................G TGAGGGCGTCACTCTAGCAAGTGAGGGCGTCA 5065 29 100.0 32 ............................. CCGGCCCGCGCCGCATGCCTGGATAGCGATGC 5004 29 100.0 32 ............................. ATCGACCATTTGATCGCGGTCGATTCCGGCGC 4943 29 96.6 32 ............................T GGGTCGATCCCCGTGGTGCCCCGACCGTCGAG 4882 29 100.0 32 ............................. GTCGCTGCGGATGGTGGGCTGGAGTCCATCGA 4821 29 100.0 32 ............................. TCGATGTCCTCCTCCGGATGATCGGGGCTGGA 4760 29 100.0 32 ............................. TGCACCTTGCAATCCTCGATGGCATCGCCTGC 4699 29 100.0 32 ............................. CCCCATGCCGCGTTATCTTCGTCAATGAGCCA 4638 29 100.0 32 ............................. GGAGTTGTTCGTCCGGTTCATTGGCCCTGACC 4577 29 96.6 32 ............................G GATCTGCTCACGGGTAGCGGTGCCGTTGACCG 4516 29 100.0 32 ............................. CATGGTCGGCACACTCGTCAACGACGAACAGT 4455 29 100.0 32 ............................. GTCTTGGAACGCTCGCGGCCGGCGGGGTCGCG 4394 29 96.6 32 ............................T TGGTCGAGATTCCCGCCGCTGTGGTGGATCGG 4333 29 96.6 33 ............................T CCAAACATTCGGCGCGTCGGAGCCGAGTATTCC 4271 29 96.6 32 ............................G GTTTCGACCCCAGAATTAACCAAGTCGTCGCG 4210 29 100.0 32 ............................. TGATCTGACCCGCAGACGCCATCTTCGACGCC 4149 29 100.0 32 ............................. CAAGCGATGGCGACGTTCGGGCGCAGCGCGGC 4088 29 96.6 32 ............................G GCGGCTTGCGGGACCAGTGCGGGACCGGGCCA 4027 29 100.0 32 ............................. CAATCGTCCATTTTCTTTCCTTCTCTCTCGGT 3966 29 100.0 32 ............................. CCACGCGCCAGACCTGCCGCCCGCGCCATCGG 3905 29 100.0 32 ............................. GCGTGGGCGTTGTTCCAGGCGTACGTGAATCT 3844 29 100.0 32 ............................. CATGGCCCAATCCATCATCGCCGTCCTCGTCG 3783 29 100.0 32 ............................. ATGCACCCGAACTGCAGCGCGAGCAGAGCCTT 3722 29 100.0 32 ............................. GCCCACTGCGCCACCGATGCGCCCTTGATCGC 3661 29 96.6 32 ............................G TCCATGACGACGACGATAATGCGCGATGTATC 3600 29 100.0 33 ............................. AGAGCGTCGAAGGGCACTCCGAAGCTCAGGCAT 3538 29 96.6 32 ............................A TCCCCGGCAGCAGCGGGGCCGGCAGGATCATC 3477 29 100.0 32 ............................. GGTGTCGTGATCGCCCCTCACGTCTACGTCGT 3416 29 100.0 32 ............................. CCCCATTGTGCGTCGTCTTCGTCAATGAGCCA 3355 29 100.0 32 ............................. TGATCGAGATTCCCGCCGCTGTGGTGGATCGG 3294 29 96.6 33 ............................G TAAGGACTCGTGCACCTCGCTCACAAACGCGCG 3232 29 100.0 32 ............................. CCGAGGTAGGCCATGAGGACGGTGAGGGCGGC 3171 29 100.0 32 ............................. TGATCGTCCACAACCCCGCCTCATCCATGACA 3110 29 100.0 32 ............................. TACGCCACCGGCCAGATGCGCGCCACCGCGTG 3049 29 96.6 32 ............................T GCGCGCGCCGCGCCCGACCGCCAGCGACCCGA 2988 29 100.0 32 ............................. GCGCGGGCCTCGTCAACCTCTGCGGCATCCGC 2927 29 100.0 32 ............................. TGCTCGGTGGGCTTCGGCGCCGGGCCAGTCGG 2866 29 96.6 32 ............................G TTATGGGCACGCTTGGACTGCGTGGAGGCTGA 2805 29 100.0 32 ............................. ACCCGCACGTGGCCGCTGATGACATCGACCTG 2744 29 100.0 32 ............................. TCAAGGGAAAAGACTTCCAGCCACTCCAGCGG 2683 29 100.0 32 ............................. GGTGACAGGCTCGCCCAGCTCGAATGCCCCCG 2622 29 100.0 32 ............................. GCCTTAGGGCCCTCTCCGGTAAAACGGTATTG 2561 29 100.0 32 ............................. GTGATCGTCGAAGGGACGATGTGGGAAAGATA 2500 29 100.0 32 ............................. CCGGGGCGGGCACTCACGTAGATGGGTAAGGA 2439 29 96.6 0 ...........................T. | ========== ====== ====== ====== ============================= ================================= ================== 46 29 99.0 32 GTCTTCCCCGCGCGAGCGGGGCTGTTCCC # Left flank : CGTCGAGTTGTGGGACTACCAGCAGAATAATATTGAGGCGGGAAAGAATTATGCTTCCGGCGGCGCAATATGGTGACGATCGTTCTTACCGCTTGCCCTGCTGGCTTGCGGGGCCACTTGACTCGGTGGCTCGACGAAGTCGCCCCCGGTGTGTTCGTAGGCCGTGTGAGCGCACGCTTGCGTGATCGATTGTGGGGCTTGGTCCTGGAACTCGTTGGCCCCGGCAAAGCGTTGATGGTCTATTCGAGCCGAGAGTCTGAGAAAGGCTACTCATTTCGGTCGCACCGGCATGGTTGGGAGTTGGTGGATTACGAAGGTCTGGAACTCGTACAGCGGCCGGCGGCACCGGCAGTGGAGAAGCCTCGAACAGGATGGTCGAACGCGTCTCATCGCCGGCGTGCCCGTCGGCGGAAGTCCGGGTAGGTAGCCCCTTGCCTACCTATCGAAGTGAACTGAAGGTAATCTAGGTCCGGGCTTCGGGTTTTTCCAGGTCAACAAGT # Right flank : GCCTACCGAGTGGACTCAGCTAAGTGTTCTGCCCCGGCAGATTCCGAAAGCTGTAGGACAAGCCATGAGTACGAACGGCTTCAGGCACCAAAAAGGCCCCACCTTGCAAAAACAGGTAGGGCCGATTGTGGAACAGTCGGGCATGAAATCCGGCTCAGTCGCAGCGGTGACCGGGCGCCGCCCGACGGCGTACCCCGGCGGTCGGCGTCGGCCAACCTACCGGGGCATGACGGTTAGTTCTGGTCCGGGACCGGCAGCAGGCGCGGCACGACCTTGCCGGTGGCGTTGCGGGGCAGGTCGTCGACGAAGTGGATGTGCTCCGGCACCGAGTGCTCGGCGAGGTTGTCGCGGACGATCTGGCGCATCTCATCCGGATCCAGCGCCTCGCCGGCCTCGTTCTTCTTGCGGATGACGAACGTGTGCAGCTCCGCCAGCAGCGTCTTGGTGTTGTTCACGCCGACGGTGTGCAGGTCCTCGACGCCATCCAGGGCACCGAGCAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCGAGCGGGGCTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGCTGTTCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-12.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //