Array 1 3003770-3002106 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016521.1 Salmonella enterica subsp. enterica serovar Heidelberg strain SA02DT09004001 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 3003769 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 3003708 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 3003647 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 3003586 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 3003519 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 3003458 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 3003397 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 3003336 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 3003275 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 3003214 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 3003153 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 3003092 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 3003031 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 3002970 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 3002909 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 3002848 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 3002787 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 3002726 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 3002665 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 3002562 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 3002501 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 3002440 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 3002379 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 3002318 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 3002257 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 3002196 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 3002135 29 96.6 0 A............................ | A [3002108] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3021154-3020028 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016521.1 Salmonella enterica subsp. enterica serovar Heidelberg strain SA02DT09004001 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3021153 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 3021092 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 3021031 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 3020970 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 3020909 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 3020848 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 3020787 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 3020726 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 3020665 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 3020604 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 3020543 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 3020482 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 3020421 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 3020360 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 3020299 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 3020238 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 3020177 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 3020116 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 3020055 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //