Array 1 284534-286360 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCJF01000002.1 Moraxella catarrhalis strain 96/281/2 NODE_2_length_347769_cov_63.096082, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 284534 28 100.0 32 ............................ GTCGTTGGACGCTTGCCCACCCCAAAATACAT 284594 28 100.0 32 ............................ TACTATACCTGATTCTTATTCTGTGAATTATG 284654 28 100.0 32 ............................ ATCAATGAGCCAAAGAAAATCAACATCGCTGA 284714 28 100.0 33 ............................ AAGTGATGGCGAAAACTGGACAATCATTGATGT 284775 28 100.0 32 ............................ ATCTCCGCCCATGGTGATGACCTCACTTTTTT 284835 28 100.0 32 ............................ ATTGGGCAGTAAGATACCACAGATAACATAAG 284895 28 100.0 33 ............................ ATGCGAATAAGCGGCGATAAGTCAGCTTCGCAC 284956 28 100.0 32 ............................ TAAACCCAATACGAAAAGATGCCAAATTTTAT 285016 28 100.0 32 ............................ GCCTGCATAGCTTAGGCGAGCTAGTGTACGGT 285076 28 100.0 32 ............................ TAATTGCTCCCCTAAGATTACCGAACAACGAA 285136 28 100.0 32 ............................ GTAAAAAGTCGGTAGGTAGGGCGAGTGGTGAC 285196 28 100.0 32 ............................ AGTTAAAAAAATAAGCAGTTTTAAGACTTGCT 285256 28 100.0 32 ............................ TATATAGCGATACAGCAGATTTTATTGCGATT 285316 28 100.0 32 ............................ AAAACCTTGACACGGTCAGGATTTAGCACATA 285376 28 100.0 32 ............................ AAGTTTTCAGCGATTGAGCCGAATGTCCGCCG 285436 28 100.0 32 ............................ TTTAGATGATGATGACTTTGTCAAAGAAGTGC 285496 28 100.0 32 ............................ AAGATGGTAAGATTATTAGTCTAACCAATCAA 285556 28 100.0 27 ............................ GAAGATCAGATCTATTATTGAGCGAGC 285611 28 100.0 32 ............................ AAACTTCGGTCGATTTTGACACGGTTGAACGC 285671 28 100.0 32 ............................ GTGATGATGTTGAAAAATATGGCAAGTTATTT 285731 28 100.0 32 ............................ TTATGACACGCTTGGCACTGATTTTAGTGATA 285791 28 100.0 34 ............................ CTGCGAAACTCGGTCATTCGCAAGTTTTGCAAAC 285853 28 100.0 32 ............................ AAACTGCCAGAGGTGTGCACTGGCAAGCCTTT 285913 28 100.0 32 ............................ ATGACGATGCTAACAGAAGAACAAGCAGATTT 285973 28 100.0 32 ............................ TCCAAAAACTCACACAGATAAAACGTGATTAA 286033 28 100.0 32 ............................ TTAGCAAGTCTTAAAACTGCTTATTTTTTTAA 286093 28 100.0 32 ............................ AACTGCTTATGGCTGGATTATACCAGTACCAC 286153 28 100.0 32 ............................ ACTTGATTTAGTAGCTAAGCTTGATGTGTCAA 286213 28 100.0 32 ............................ GCCCTCAAAACTGGTTTGCAGTAGCTGATGTG 286273 28 100.0 32 ............................ CCGGTTTGGGATTGCGAAAATGGATAGATGTT 286333 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 31 28 100.0 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGCGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT # Right flank : ATTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTACAGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCCGCGCGCGCCAATGCCGAAAGCTATAATGCCCAACGCCGCATGGAACAAGAAACCGATAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAATCTAGAGCGCGCCATTAAAGATACTGAAGAGACAGGTACAGATGACGCATCACTTAAAGGCATTCGCCTAACACATAAAGTACTGCTTAGCATCCTTGAGAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [81.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //