Array 1 210-3677 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJHT01000227.1 Cylindrospermopsis raciborskii C04 NODE_436, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 210 36 100.0 35 .................................... TTTCTGGAGTCCACGGAAACTTATTTCCGTGAAAA 281 36 100.0 35 .................................... CAACTGGCAAGTAAAGAGAAGAGTTGCCCGTTTAA 352 36 100.0 38 .................................... GAGGAACTCCATTACCCAGAATCGGAGGGGTGGATAGT 426 36 100.0 37 .................................... CAATTCAACCAAATCTATGTTGGGGACATTGACAACA 499 36 100.0 40 .................................... AAAGCTCCCATAAGTTTGACTCACGGGAGCATCAAAATAA 575 36 100.0 35 .................................... TTCTACTTCGCACTGGTCTAGGAGAATCTGATTCT 646 36 100.0 39 .................................... CAGCTTAATATAGTCGCATCAATAGATTGCATTAGTATA 721 36 100.0 39 .................................... CTACAGAAAGAGTGGCCACCGTAGGGGATCCGGTCTACT 796 36 100.0 35 .................................... TCTGTCGAAGACGTAAACTATATTATTTTCATCAC 867 36 100.0 39 .................................... AATTCACTTTTTTTGAAGTTTGTTTTGTTAACTCTAAAT 942 36 100.0 39 .................................... TGGTAGGTATGATAGGAGAGAAAGAATCTATTCTATAAA 1017 36 100.0 36 .................................... TAAGTGGAGTAGCCAGAGGAATAGACATTAATTGGA 1089 36 100.0 35 .................................... TATAGGCTTAAGGACTTTTTGTACAGGTCTATCGC 1160 36 100.0 38 .................................... CACCAGGGAGCGGTTTGATCCTGGTAGGGAGGAAGCCA 1234 36 100.0 35 .................................... CACTCTTAAAAGTGGCGATAAGCACCTAATATCTT 1305 36 100.0 38 .................................... TCGCGGTAGAATTGGTACACGTGAGTAGAACTGAAATT 1379 36 100.0 39 .................................... TCTATCCCAAAAACCACCAAAAATGATAGGGGTTGTGTG 1454 36 100.0 37 .................................... GCAAGAGAATATTTCTAATTCTGTTTCCAGGTATTAG 1527 36 100.0 40 .................................... TGACTCGACTTGACTCGACTTAGTTCGACTTGACTTAGTT 1603 36 100.0 40 .................................... GGCTGTAGTCTTCAACTACAGGAGCTTCTTTAGCCTCTAA 1679 36 100.0 36 .................................... ATTGTCCATCAGATAGAGAATGATGGCTTGTCTTTA 1751 36 100.0 39 .................................... TTTTGCGGTTGACACTCTCTTCCGCTCTTAAGCCCAAAA 1826 36 100.0 38 .................................... CTCTGGTAGATCTTTGGTGTACTGGGAGAGAATCCTGT 1900 36 100.0 36 .................................... TTGTTCATAATCATAATTAACCTTGTTCATAGACAA 1972 36 100.0 39 .................................... GTATTTATCTCCTATCTCGTCAGGATTGAGGATCCTGAT 2047 36 100.0 37 .................................... CCATGAATAATAACCCCACCAACACCACCAACCCCAA 2120 36 100.0 35 .................................... AGTATAACGATGGTTTGAGTCTATGTCTAATCAGT 2191 36 100.0 38 .................................... ATTGCGTATACAAAAGGACTTAAAGCAAAGCCGGAGCA 2265 36 100.0 35 .................................... GTGTCAGTGTCATTGGTTAATTCGTATTGATACAA 2336 36 100.0 40 .................................... TCTCCAAAATGTGGATATGTATCTGGTCTTTCCTCCTCTT 2412 36 100.0 35 .................................... TTCAACTGAGTCAGGGTTGACGGATATCCTAAACC 2483 36 100.0 37 .................................... GGCAAATTTACCTGCCTCAATCCTAAATCTTTCATCC 2556 36 100.0 36 .................................... TTCTTTTTTAGAAAATATTGACAAAGAGGAAGTTTA 2628 36 100.0 38 .................................... TTTGGTTTCTTCAACCTCGCCTCCTCTAACGTGAACCA 2702 36 100.0 36 .................................... ACATTATGGGTTCCACTCCATTTCTAGAAGGAATGA 2774 36 100.0 34 .................................... TCAAGTCGAGTGTAGGCGTGGGCATCGCGGTTAA 2844 36 100.0 39 .................................... ATGATATATTAATAATGGGGAGGCATGCCATAAATTTCC 2919 36 100.0 38 .................................... TAAGGTAAATAAAAAAGAATGGGCTGAGTACAGGCAGC 2993 36 100.0 38 .................................... CTTAATTAAGCCTATGCTCCCAACTTGTATTAAATCTT 3067 36 100.0 37 .................................... GAGTCAGTAGCGACGTTTACGTCGTTCTCCCTTAACC 3140 36 100.0 35 .................................... GAATCACAGGGGATTCCTGTGGTAGAATCACAGAA 3211 36 100.0 35 .................................... TGGATACCTTCAGTAATTTAAACTATAAAATAAAA 3282 36 100.0 35 .................................... TTCACGGCACAAGGAAGAATCCTTCTCATTGAAGG 3353 36 100.0 33 .................................... CTATTATCATTCAAATTTAACTAGAGTTCCCCC 3422 36 100.0 35 .................................... TTGTTTTCTATAATACTACCTACTCTGACCAACTT 3493 36 100.0 36 .................................... TTGAACTTGATTGCTTCCTTTTCAAAAGGAGCAAAA 3565 36 100.0 38 .................................... TTCCTCTTCCTCTGCCTGACGGTAGAGGAGGAGGGCTG 3639 36 83.3 0 .......................CT..CGG.....A | A,T,C [3665,3671,3674] ========== ====== ====== ====== ==================================== ======================================== ================== 48 36 99.7 37 ACCCGCTTCCCTCTGGGAAGTGGAATCAATGGAAAC # Left flank : GACAAAAAAAACAGTAATTAACGAAGAGATTGCGAAGGTCAAGAAAAAACGCTGGAATGCCTATTATTTCGTCGGGAACCTCGCAGCCTTGTGGTGTAAGGGTTTCAGCCATTATTTTGAGGGTAGTGGAGGTGAAAAACAGAGAAATTTTGCTGACCTTCGCAAAGTGGGTCTAGACACCAGTCAGAGCAAGGGCTTAAAATGGAGGGA # Right flank : GTGGTCAAACAGCTTATTTAATAAGGGATAGAGCCTGAAAGCCACGCTGGAAAAAGAGGCGTTTATGAGGTTTGAGACCGATTAAGGTCAGAGCTAAATCAGCCCATAATTCCATGCCGTAAATCCATAATTGTCCGTAAACAGCAAAGCTAAAATCACTCTGACTTGGGTAATTGTCCTGATGTTGTTGAATCCGTCCGGCATAAGTCTCTATCCCTAATTTTTTCATCCGTTGACCGTACATAGTGGCTAAACTATAAGCAATCACAATTAATAAAACTAAGGCTAAAAAACGAGTTTCATTTACTTTAGTATCCTCTAGATTATAACCACCTGTTTTACAATC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCCGCTTCCCTCTGGGAAGTGGAATCAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.30,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 1 1593-1404 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJHT01000268.1 Cylindrospermopsis raciborskii C04 NODE_549, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 1592 36 100.0 37 .................................... AATTGGTTGACAACCAAAAAAGGTGTGTTATGGTAGT 1519 36 100.0 44 .................................... TGGAAACCCCCCAGCCACAAACACATCCGCATTAGACTTAAATA 1439 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================ ================== 3 36 100.0 41 GTCTTGACCTTCGTAAGAAGGAATAGGTATTGCGAC # Left flank : TTTAAAGTGTGATATTTCTTGTAATGGCATATTTATGAGCATAAAAGTGGAATTAAACATGAACGTAGGTTGGGTTGAGGAACGAAACCCAACGCCCCCATGGGTTACCCTACCCCTAACCCATCCTATTTCACGGGGCGATCTCGCCAGTGCGAGTGCTTCGCAATCGCTTGATTACTTGATTTTCCATTATATGGTGTCCAATAAGACCTGCCCACCAGTTATCGAGTTCGGAGGGGGGTATACCCCAGGTGCCATTTCTTAGGAATTGGGTGGGTTCTGGTTCCATGAATACCAATTGTTTTAGATCCCCCTTTGGTTATTTGTTTTGTAATGATAGGTTAGGGTTCTGGTTAAATATAATATTAACCTGGTAATAAAAACTTTGTCTTCTCTCTATAGGAATAGTTACATCTATCTTTAGACAGAAAAATCAGTAATTAACGAAGAAAGTGCGAAGGTCAACAAAAAACGGTTGGCACTTCTTCTGCTGTACGTAA # Right flank : GTAATAAGGTTGTTTCCAACAACTTTATTACTTAAGCTTCTCCGGTCTGAAGACACGGAGATTTCTGAAGAGTCCATAAACGAACTTTTTTTATTTCATCTACCTGATAGACAAATTCTGCATAAAATTGTCTATTTCTAGGTAAAATGCGTACTTGATTGATTTGAAGTCAAGGTTAGATGGCATTGGTAGACAAAAAGAATCTAGGTTCTTGCGTCTGTTTTATGGACAATTAATAGAAAAGTGCCAGTGTAATAAACTGCGTAGACGAAAATTGTTGAGGTTACGAAGTCCATATCCCAGTCGTTTAATCAACTTGAGTTTATTATTAATACCTTTAACCCAACTAAATTCCCACCTGCAACGAAGTGAGGTGGGAACTATCGGACTATATAAATGCTTAATTATTCGATAGACGTGCTTTTACATCCGTTGCAAAGTCTTCATATCTTCTCAAAGGAGTGACTTGTACATGGACATTTTGACCCATTTTTTTCATA # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGACCTTCGTAAGAAGGAATAGGTATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.20,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 2852-3483 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJHT01000279.1 Cylindrospermopsis raciborskii C04 NODE_575, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 2852 36 100.0 38 .................................... CAGGAAATTGCGGAAGGCCGCAATAACTCAATTATCGG 2926 36 100.0 35 .................................... ACGTATTCTTGTAGCTCTTGGCTATCAAACCACTC 2997 36 100.0 42 .................................... GTTATATTCGCCCCGGCGAAAACGGCGAACGAGAACGTATTA 3075 36 100.0 38 .................................... GAATGATTTCTTGAGCAACCGCAGGAGGGTCTTGTATT 3149 36 100.0 38 .................................... AGTTCCTCAACTCCATCGTATTCCGTTATGTAGTAACG 3223 36 100.0 35 .................................... TAGAGTTGGGTAGTTGGGTATTTTGGACAATTCTT 3294 36 100.0 44 .................................... ACGGTGTGATAGTTATTATTGTACATGGGCATACTTTTTTACTA 3374 36 100.0 38 .................................... CGGAAACGTTTTTTCTTGCCTTTGATCGTAATCCCCGA 3448 36 97.2 0 ...................................A | ========== ====== ====== ====== ==================================== ============================================ ================== 9 36 99.7 39 GTCTTGACCTTCGCAAGAAGGAATAGGTATTGCGAC # Left flank : GTGAATAACTATCTGTTGTCTATATTGGAGGAAGATAATAATAAACAGTCATAAGTTTATCATATATGATTAGTGCTGATTCTCTCTGGGAAGTAGAATTAGTTCCAAAAGTTTTATAGTTAAGATTTTCTCTACAGGTGGCGAATAAATAAATATTACAATATTGATATTATATGTAAATTATTAGTTTTTTGGTGTAAAGTTATTATAGATTAGGAAATTAAGGGATTATATCATTATTAAGATGAGAAAATTAGTCCAGTATTTATGAAAAGTAAAAGTAATATTAAAGACAGTAAATTAAGTGATTAACGAAAGAGATGCGAAGGTCAGGAAAAAACGCTGGAATGCCTATTATTTCGTCGGGAACCTCGCAGCCTTGTGGTGTAAGGGTTTCAGCCATTATTTTGAGGGTAGTGGAGGTGAAAAACAGAGAAATTTTGCTGACCTTCGCAAAGTGGGTCTAGACACCAGTCAGGGTAAGGGGTTAAAATGGAGGG # Right flank : ATTGAGTATATTTAGTGTAGATAAGTAAATTCGCAAACTTTAACGTTCATAAGAGAAAGAAGTGTTAAGACAAATAAAAAAGAGGGAGGATAATCTTCCCTCTTTCATTTAAGTATCTATAGATAAAGACTACTACAATCATTAGGGCGGGCATGTAGATATTTAGTTGTAGTAGCGACAGAAGAATGACCTAAAGATGTAGAAACTTGATTAATATCAGCGCCATTGTGTAAAGCCAAACTAGCATGAGTGTGTCGGAGCCAATGGGGACTGGCGCTGATACCAANNNNNNNNNNAATCATTCATTATTTTATTTGGTATACTATCATCTGGAGTCTTGACCTTCGCAAGAAGGAATAGGTATTGCGACATATAGCGGGGACTTTAAAACCATTGTGAGATATTAAGTCTTGACCTTCGCAAGAAGGAATAGGTATTGCGACTGGGAAAGCCAATGGAGAAACCCAAACCCACAAAGACACAGGTCTTGACCTTCGCAA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGACCTTCGCAAGAAGGAATAGGTATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.50,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 3817-6808 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJHT01000279.1 Cylindrospermopsis raciborskii C04 NODE_575, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 3817 36 100.0 37 .................................... ATATAGCGGGGACTTTAAAACCATTGTGAGATATTAA 3890 36 100.0 41 .................................... TGGGAAAGCCAATGGAGAAACCCAAACCCACAAAGACACAG 3967 36 100.0 36 .................................... ACTATCTCATATCTTGAATAAATTAGCTTGTTACCA 4039 36 100.0 38 .................................... TAGTTGAGTTAGTTTACTGGTAAAAGTTTATGCGATAC 4113 36 100.0 37 .................................... TAGTTCCTTTATATTATCGAGTTGTTAATCAAATGGA 4186 36 100.0 36 .................................... ATCTAAAACAAGTTGGACTCAAAAGCAAATATCCAA 4258 36 100.0 38 .................................... AATTAATCCTCTTTTAACACAATCGAAGTTATTCACAA 4332 36 100.0 39 .................................... ATAGCATATACCACGATAATAGTAAACCCAACTAGGATG 4407 36 100.0 38 .................................... CTCTAAGGTGTTAGTCATAGATGCTGATTTGAAATCTC 4481 36 100.0 42 .................................... ACTCAAAACTAAATCAACCTCTAGATCTGTTTCAGAAAGATT 4559 36 100.0 35 .................................... TGATTTTAGTAACATTGTTTGTCTGGGCGTTTTAA 4630 36 100.0 39 .................................... ATCTGGTTTTAGCGATCGGTCTACCGGGTTGTTTCCGGT 4705 36 100.0 37 .................................... ATACGGAGCTTTAACCAAAGCCTGAAAATACTGACAA 4778 36 100.0 39 .................................... AGCCAAGTCAAGTTGAGTCAAGTCGAACCAAGTCAAGTC 4853 36 100.0 39 .................................... CCACTTCGATCCCTCCATCGTCTGCCCCTTGGCTCTACT 4928 36 100.0 35 .................................... ATCTAATAGCGTTCATAATTTGTCTCCTTTGTTTA 4999 36 100.0 40 .................................... TGTTCCAAATCTAATAAATACATTATTTTCTCCTTGTAAA 5075 36 100.0 36 .................................... GTTAGGTGAGTTGAGGACTGATGAATCTGCTTTAAT 5147 36 100.0 38 .................................... CACCCAGATTCTAAACTGTTTAGCTATGGTTTTAGAAT 5221 36 100.0 38 .................................... GAATTGAAAATCATTGGCAAGATGATAGTTACTGTCAA 5295 36 100.0 39 .................................... ACACAACTTCAAAGTTTTTCATAAAAGATGTTTGCAATA 5370 36 100.0 36 .................................... TTCCTGTAGCTTTAACCGCGATGCCCACGCCTACAC 5442 36 100.0 38 .................................... GGACTTAAGATAATCACAAGGAGACCAAAAATATGAAG 5516 36 100.0 38 .................................... GAGCTTCCTGGATGCAGTATCCAGGATAGTATCTTCCT 5590 36 100.0 38 .................................... TTGAGATAGCCCTTGCCTGAGCAATATTTCTATCTCTT 5664 36 100.0 36 .................................... AGATCGACTATTTGATTTCCTGGAAAAATCATTTTC 5736 36 100.0 38 .................................... GTAGAAGAATACATAGACCAGGTTGAAGAACGCATAGA 5810 36 100.0 35 .................................... ACTATATAGTCCTCCATTTTGATCCAACTGCTATT 5881 36 100.0 40 .................................... TAGATGCAATTAATTTCTGTAATGCCATGAAGATTATTAC 5957 36 100.0 39 .................................... TAGAAGTGCATCAAGCCTTCGGGTGGGAATTACCCGACC 6032 36 100.0 36 .................................... CTGAGGAGTTTGAGACTCAGAAAGCTTGGTATTAAT 6104 36 100.0 40 .................................... ATGAGTACTACCCATAAATCCTGGTAAATACCATCCATTT 6180 36 100.0 38 .................................... CATCCTGAGAAGAATCCTGAGAAGAAAAAGAAGAAAAT 6254 36 100.0 40 .................................... TCACGAGTTGAATACTCGTTGGTTTCATCAAGTAGTGATG 6330 36 100.0 39 .................................... TTTGCATGTTATCCTGTCCTCTTTCATCTTTGATAATGA 6405 36 100.0 33 .................................... TCAACATTAAAAAAAGGAAACGACATGAGCATA 6474 36 100.0 43 .................................... GTTTGTAAAAAGACAAACCCGTTTAAGACGGTTTACAAAGAAA 6553 36 100.0 36 .................................... AATTTTTTCGTGATCAAAGTGGATCACTAAGTAATC 6625 36 100.0 39 .................................... GTATCTATACTAAAAATAACGATGGCGTTATACTATACC 6700 36 100.0 37 .................................... TCCAAGTATTAGATAACAAGGTTAACGGACAAATTAC 6773 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =========================================== ================== 41 36 100.0 38 GTCTTGACCTTCGCAAGAAGGAATAGGTATTGCGAC # Left flank : TAGGTATTGCGACACGGTGTGATAGTTATTATTGTACATGGGCATACTTTTTTACTAGTCTTGACCTTCGCAAGAAGGAATAGGTATTGCGACCGGAAACGTTTTTTCTTGCCTTTGATCGTAATCCCCGAGTCTTGACCTTCGCAAGAAGGAATAGGTATTGCGAATTGAGTATATTTAGTGTAGATAAGTAAATTCGCAAACTTTAACGTTCATAAGAGAAAGAAGTGTTAAGACAAATAAAAAAGAGGGAGGATAATCTTCCCTCTTTCATTTAAGTATCTATAGATAAAGACTACTACAATCATTAGGGCGGGCATGTAGATATTTAGTTGTAGTAGCGACAGAAGAATGACCTAAAGATGTAGAAACTTGATTAATATCAGCGCCATTGTGTAAAGCCAAACTAGCATGAGTGTGTCGGAGCCAATGGGGACTGGCGCTGATACCAANNNNNNNNNNAATCATTCATTATTTTATTTGGTATACTATCATCTGGA # Right flank : CGCATTCAACAAGCAGTCATAATGTTAGGAGGAATGATGGAAGGGCAAGCTCCTGATCCATATAGAGCATCTACTTTTTATAGGCTTAAAACCCTTGATTTACATTTTGTACATAAACAAAGTAAAGATTTTCTGTTCCCAACTATTAATATCTATGATTCTTTAGCTAAAGATTATAACACAAAATCTCAAGAGTATGTCACAAAGTTTGAGGAAAAAGTCTTTGAGTTTATGTCTCTAGAACCTAAACTCCCAGAGCCAAACTATAGTAAAGCACCAAAACTTGTAGAGCTTGAAGAAAGTTTACTTTCAGCTAAAATAGTAAAAACTCCTGGAATGGAAGAAATTATAAAAATTAGTGAGTCTGTTCTCGAAGTAGGAAAAAAAACAGAAGATATTCTAAAAGAAGCTTTAAGAGAAGAAGCTAATCTTAATTTTAAAGAAGAGTTTATTAATAGAATAAAAGAAGACAACAATAATATAAAAAGTTTAAAAGCATA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGACCTTCGCAAGAAGGAATAGGTATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.50,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 2682-2346 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJHT01000006.1 Cylindrospermopsis raciborskii C04 NODE_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 2681 37 100.0 38 ..................................... TGGTTGCACTAAACCATGAGCTTCTCCTACGTTTTCGT 2606 37 100.0 37 ..................................... TTGTTGGCTCTCTCCCATGAATTTGTTTGAATAGTTT 2532 37 100.0 39 ..................................... CACATCTAGAGGACAAGCTAGGCGTGCTGGAGTCGCAGC 2456 37 100.0 37 ..................................... TTGACAAACTTAAAATAGAGAGATATAGTAAAAACAC 2382 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 5 37 100.0 38 GTTCAAATTTAGACTTATCTCCATAGGAGATTGAAAC # Left flank : GTTTAGAATCATCAAGCTATAACGAACCAATCAAAAAATCTGAACGTTGGATGAATGGAATGCTTAACTGGTCTGATTTGGTTACTAAACCTCAGCTCTTTGATTTAATTGCTTCAGCCTTACCCACTCGTTTATTAGAGAATGGTAAGTATTTGGTCTCTACTCGTCTATTAGAGGTTAAATTTGCTGATGATGAGGTGATTTATTTACCGAGTGATATGAATTACTTGGCTGCTCTGTAGAGGGATTTCTGCGAGTTGTCTGGGTTCTGGAGTTCATCTTTTAGGCTAATCATCTCTGAAGCTTTTGATTTGATTAGCTTTTTCTACTCCCGGTACTGGTTTCTTGTCTCGCATTTTTTAAAGGCTTGCTGTATGGTAGTTTGACTCTTTCTTCCCTGTACTTTCGTTCTACTTTTTTATGGTATATTCTATGTTAGCTCAATTCGTCTCGCAATATGTCTCTCTAGGCTACCTGCTGCAATGGGTTGGGCGATCGCC # Right flank : CTGATGACATTAGAGAAGGTAAGAAAAAAATATTATGAGAAATAGAAGTGTATCTGACATGCCTCTTAGAGAGGGCGATACAGAAATACAGACGGTAGGCTGTAGGCATACTAATCCTGATATTTGTGCAAAGAATGGTTTACATGGAAAGTGCGCTTTACCAATAAAGATAACATTTGCTTTACTCCGCCAGCGTCATGGAAGAAAAAATACATAAATCTTAAAAACGAAGGATTGAAATGAAAATCATTAGCGTAGCGGCTATTCAAAAAAGAGAATATTGGATAGAAGAAATAAGAAAATTAAGCGGTAATTTCGGTGATGATTCAGAAAGATTGGAAAAAGAACTTTCTTATGAAATACAAAATGAAGGACTAGAAACATTATTAAATCACTTGAGACTTAGTGGCGATATACCAGAATCATATGGTCATGATACAAGCGAAGAAAAACAGTATTCTAAATATACTGACGCTCTTCTTTCTGAGTTATATAAGGCA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAAATTTAGACTTATCTCCATAGGAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : NA // Array 1 1-1297 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJHT01000327.1 Cylindrospermopsis raciborskii C04 NODE_694, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 1 36 100.0 39 .................................... AAATTAAAACAATTCATGTTAGAATAACAGTATAGTTTC 76 36 100.0 32 .................................... GAAACTGCTCAAGCAGCTCTAGAGCTTCTTGA 144 36 100.0 36 .................................... ATTAACTAATGTTGTTGGATCTGCTGTCCCACTCCC 216 36 100.0 41 .................................... TACTCCAAGACTTGAAAACACTTGATGCCTATGATCAATAA 293 36 100.0 37 .................................... AATATCCTTTTGGAGATCCCAAATTTGTAACATTTGA 366 36 100.0 40 .................................... GAACTCAGTAATTTTTTTTCTTGTTTTATAAGCATACTCA 442 36 100.0 39 .................................... AAAAGGAAGTGCGTTGAGAGTTGGGTAATATAGCTTCAG 517 36 100.0 40 .................................... GCTAGATTGTCGGTAGACAATCTAAGTAACGAATTATCTC 593 36 100.0 38 .................................... GTCCCGCCAGTCGCGGAACCTTTTCTTTTTGCCTTTGA 667 36 100.0 41 .................................... TCCCCTTTCATTAAACTCTTCAAACTATCCCTTTTTGTCGG 744 36 100.0 40 .................................... CTTTTATAGTCTCCTACTTGTTGATTGAGTATTCCTCTAC 820 36 100.0 35 .................................... AGGCAAGCGAACTCTCCCTGCAAAAACCTCTGCAT 891 36 100.0 40 .................................... TTTATAGAATTTATAACAGCCTTGGTGAAACTACCTGCTC 967 36 100.0 35 .................................... CTTCAACAAGCCCATTTAGAAGATAATTTCTTATA 1038 36 100.0 36 .................................... TGATCTTTAAATCAGAGATTTGCTCAAATAAATCAA 1110 36 100.0 41 .................................... TTAAAATTGCTTATTTAACAAGGTTAAGACTTAGCGATGCT 1187 36 97.2 39 ..G................................. AAAAGGAAGTGCGTTGAGAGTTGGGTAATATAGCTTCAG 1262 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 18 36 99.8 38 GCCCGCTTCCCTCTGGGAAGTGGAATTAATGGAAAC # Left flank : | # Right flank : CACTCGGAGTTCCATAGCCCTTGGACACAATTGTATTGTTGACGTCGCTGTGGCAAATAACTGTATAATCGGGTATATACGTTGCCGAAAAGATGGAATATTTGGACTCTATGTCTACGACCTGCTCGTTTCCAAGCAATGGAGGGAAAAGGGACGAGGAAAACGTCTTATTGAAACTGCTGCTGCTGAGCAACCACGTACATGGGAACATTTTCTTGATGTCTGGGAAAATTAAACTCTTTCTCCATTGGCGATCGCATATCGAAACTCAGGGAGAATAACATACCACTTACTCCCAAATAGGATTTTAAGCACTCCCTATGGGAAATCGCATCTTATGGAGCGAATAAAACAACTTTTGAATATCCTATCTGTCAGGCGATCGCCCATCTTAGAACTCTCACTTCCTTACCCACATAAAACAACTACTCGAAACCCCTATACACAAGAGCGATCGCATCTCCTGGTGTTACCCCAAGAAATGCGATCGCCTAATAATG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCCGCTTCCCTCTGGGAAGTGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.30,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 2506-1554 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJHT01000387.1 Cylindrospermopsis raciborskii C04 NODE_851, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================================================== ================== 2505 36 100.0 43 .................................... ACGTTATATTGTGAAAAAGCTCCAGCAAAAAAGAGACCGGATC 2426 36 100.0 37 .................................... TTGCCTGTGGGCTGTAGCTAGCATCGGACGCATAACA 2353 36 100.0 39 .................................... TCTATCAACCGTAGTGCGACATTATACATCTTATCATTC 2278 36 100.0 38 .................................... CACCGAAAGAGGTGGCTGTAAGTAGGTACTTCCCTATA 2204 36 100.0 35 .................................... TTATCATTTGCTTAAACGAGTCAAGTCAAACTAAG 2133 36 100.0 43 .................................... CAAATAGACGTTTGCACTAAAATATCCGGGTTAAAAAGGCAAA 2054 36 100.0 40 .................................... TTGATTGTTTTTATTGGGACACGAATGGATTTGAAAAGTT 1978 36 100.0 67 .................................... ATAACTACTCTATTGATTCTATTAATAGATTTAATGGAGAGCTTTTAGATGTTGTTATTCCTTCTAA 1875 36 100.0 38 .................................... TGTCTACCGCCAATTTGGCGGGTGAGTTCGACTCGTTA 1801 36 100.0 35 .................................... GTAGTTACTTATTCCTATTCGTAATTATAACATAG 1730 36 100.0 36 .................................... TGGTGGAGCTTGGCTACTCCACCGAGAGAGTAGCTA 1658 36 100.0 35 .................................... CAAGTCCAGCCGTGGTGATACTGTCGTTATGGACA 1587 34 86.1 0 .......................T.--......C.T | ========== ====== ====== ====== ==================================== =================================================================== ================== 13 36 98.9 41 GCCCGCTTCCCTCTGGGAAGTGGAATTAATGGAAAC # Left flank : CAGTTATTTTAAGGATTTTTGCGTATACTGTTTGACTAAATGTAGTTATGCGATTTGGTATTGTGTTTTATCGTATTGAGTCATAGCTATACATTTTTGTCCAGACAATGAAATATACTTTTAAAGTATTGCACCCGGTAACTTACAGTAGGGTATTTACAATAAAAATAAAATATACATAAATTTTAGGGAATTATTTTGCTGTAAATGTGTTATAATACGAGGAAATATAGGGTAAAATGGATATAAATATTTAAGTAATAAGAAAGAATAATGATAAAAATAAAGACAAAAAAAACAGTAATTAACGAAGAGATTGCGAAGGTCAAGAAAAAACGCTGGAATGCCTATTATTTCGTCGGGAACCTCGCAGCCTTGTGGTGTAAGGTTTTCAGCCATTATTTTGAGGGTAGTGGAGGTGAAAAACAGAGAAATTTTGCTGACCTTCGCAAAGTGGGTCTAGACACCAGTCAGGGCAAGGGCTTAAAATGGAGGGACAA # Right flank : TGACAAATTCTTTCTCCAACCCATGAAAACCCAAATCTCCCTCTATTGCTACTTCATCAGGAATGTATTGCACTATCTCTGATTCATGGAGTAGCCGTTTGTCATGCACTTTACCTGCTCTGGTTTTCGTCAGAATAATCACTCGTTTCTCCCTTGTGCTGACTGTAATCTGCTTGCATGCATGCCGCTTTTTCTTGCCAGAGTAATACTCTTTTTGGCGTTCTCGGTTTTGAGGACGCTGGACTGGACGCTCCGTAACATCCACAATCACCTCCTTCACATCTGGAAACCTTTTGGTGAATTCCTCCATGCTCCTGAGTTTGCGTGCTGGCAAAACTTGCTTTTCTCCTAAAGTGGTTTCTAGCACAGACAGTAGTCGATGTACCCAATCATGAGCACAGGAGCGGTCAAAGTTGAACAACACACTCAGCAAGTCAAACGTCGGATAACATTTGCAGTACAGCAGGATATAAAATAGTTTTTCCTCTATACTTCTGAGT # Questionable array : NO Score: 3.04 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.16, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCCGCTTCCCTCTGGGAAGTGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 1 9937-10924 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJHT01000113.1 Cylindrospermopsis raciborskii C04 NODE_194, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 9937 36 100.0 38 .................................... CTGGGATAAAGTTATACCAAAAAAATATTCTAAAAGAT 10011 36 100.0 36 .................................... AGAGATTGGCAGTGGACATGAATCCTTGCCTTTATT 10083 36 100.0 38 .................................... AAAATGATTTACCTCTTCGGTGCACTGGTCTAGGAGAA 10157 36 100.0 39 .................................... ATGGACAGCCTGTAATCTCCTTCTTCCGTCAAGATTTTA 10232 36 100.0 36 .................................... TTGCCTTTATTAAATGTGTCAGGAGCATCCATAGAG 10304 36 100.0 37 .................................... TCAAGGGGAGCTAGCCCCGATAATAAACGTATTGCTT 10377 36 100.0 38 .................................... TGAAAACATCGTTGTGTCATGTCGACACAGGGTCGACA 10451 36 100.0 39 .................................... TTTTTCTGGACAACAGAAAGTGTCTTTCGGAAAGTTTAT 10526 36 100.0 36 .................................... TCATAATAGGATAATGACTCACGGTAGAGTCTTACT 10598 36 100.0 37 .................................... AGTTCGTATGCAGCGTTTATCTGCTGCATCACTTGGG 10671 36 100.0 36 .................................... TAAAAGACCTCCATGCCCAGGGCATGAGGCAGATAG 10743 36 100.0 35 .................................... ATCAACTACTTCCTTGATCTTGTCTAACAATATGA 10814 36 100.0 39 .................................... CTTGACAATAAATATTAGCGGTGTTACCCTAATAATGCC 10889 36 83.3 0 .........C......T........A.....T.C.A | ========== ====== ====== ====== ==================================== ======================================= ================== 14 36 98.8 37 GTCTTGACCTTCATAAGAAGGAATAGGTATTACGAC # Left flank : CTATCTATGGGAATAGTTACATCTATCTTTAGATAGATATTTGGGTAAGATAGGGGTTTGGGTAGGTATTTTACGACATTTTATCTAACCTAAAAACTTTTATGCGAGTAATGAAATATCCCAGTCAATGTAGTACCTAATGGGGGGTGAGAATGAAGTGGTCTCAAAAAAATAAAATATACATAAGTTTTAGGGAATTATTTTCCTGTAAATGTGTTATAATAGTGGCACAAATGGGGAAAAATCGGTATAAATATTTCAGTAATAGTAAGGGATAATGATAAAAATAAAGACAGAAAAATCAGTAATTAACGAAGAAAGTGCGAAGGTCAAGAAAAAACGCTGGAATGCCTATTATTTCGTTGGGAACCTCGCAGCCTTGTGGTGTAAGGGTTTCAGCCATTATTTTGAGGGTAGTAGGGGTGAAAAACAGAGAAATTTTGCTGACCTTCGCAAAGTGGGTCTTGACACCAGTCAGGGTAAGGGGTTAAAATGGAGGG # Right flank : CTAAATAATGAGTGCTTGAGAAAATATCGAACTTATTAGCTGTGCAACATGAAAAAACTACAAAATCTTCTTTTCTCCTTCCTCATCTTCACTTTAGTATTTTTAGGAATTACAGCTTTTTTTATTCCTAACATTGCTTATGCACAAACCCAGAAGTGTTGAATGTTAAGAAAGTTGTGATAAAAATTGCCCAAAATATATTAAAATTTGGGCAACCCATATCAAAATATTAATTTGATAATGATCATAAATTCATTCCCCAAGATTGTCAAGGACATCCTCAGACCGTTACCAAAAAATGATTATCCAGTTTTGAACAGCCGTCTTTA # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGACCTTCATAAGAAGGAATAGGTATTACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.70,-5.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 2875-4743 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJHT01000002.1 Cylindrospermopsis raciborskii C04 NODE_2, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 2875 36 100.0 37 .................................... AACAGGAAATAAATGGAGTAACTCCATTTAGGTAGAA 2948 36 100.0 35 .................................... CTTAGGGGATTAAAAGGAGTTGTTCATTTTTTGTA 3019 36 100.0 37 .................................... AAAAAAAAGTCTTTTCTTTGAGTTAACCTATTAAAAC 3092 36 100.0 35 .................................... GAAGTTAAAGAAGCCGTATAAAACCCTGATTTACG 3163 36 100.0 42 .................................... GGTTTTGAGTTTTTGATTTTTTGATCTGGATATTCCTCCATA 3241 36 100.0 40 .................................... AAACCAGAAAGGGAGAAAGAGAATATGGAATTAACAGAAT 3317 36 100.0 36 .................................... TCTCCTGCAAAGGCAAACTTGTCTTCCTTAAAGAAA 3389 36 100.0 33 .................................... TTGAGGATTTTATCTTGTGCCACTCTGTAACAG 3458 36 100.0 40 .................................... GATCGAAGTGGAGAACTATGTAGTCCTCCCTTATAATAAA 3534 36 100.0 39 .................................... GTCTTAGCGTACGTTCCTGCTGTTATCCCTAAATTCATA 3609 36 100.0 41 .................................... TTAAAAGAAAAGAGGTAGCCGCCCGGCTACCTTATAAGGGT 3686 36 100.0 37 .................................... ATATCGTAATACCTGAACATTTTTAGTGCTTTTTTTT 3759 36 100.0 36 .................................... GTCTCATTTTTGTCCTATAGTAGCAAGACTTTTCCT 3831 36 100.0 36 .................................... GTCTCATTTTTGTCCTATAGTAGCAAGACTTTTCCT 3903 36 100.0 36 .................................... TTCAATGATTTCATATTTATTACTTAGATTAAATGA 3975 36 100.0 36 .................................... GGCAGGGTGGTGTCTGGGGATGTCTTCGGTTTCCCA 4047 36 100.0 39 .................................... GAAGTAATTAAAAAAATCTTGTTCATACAGATCGAAGTG 4122 36 100.0 36 .................................... GATGATGTTCCCATATAGTTGATGGATATGTTTCGA 4194 36 100.0 37 .................................... GAATCCTCGGGAGTAAGGATAACTTCTGAGGATTGAA 4267 36 100.0 38 .................................... TCGGCTGGAGTTGATGGCATAACCATAGACAAAAAAAA 4341 36 100.0 37 .................................... GAAGAAGTTTGATCATATGGATCAAACTCACAGAGGA 4414 36 100.0 38 .................................... GATTGCTCAAGAAATCATCCCTCCCCAAGGGTTTGACC 4488 36 100.0 37 .................................... GAGACTGTTACAAGGGGGTTTGATTGGATTACCTTTC 4561 36 100.0 38 .................................... CCATTTTAACCACTAAGCAATCAACTTCTATTTCAAGT 4635 36 100.0 37 .................................... GTATAAGTCGAAGTGTTTATCTAACACTTCTTTTAAG 4708 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 26 36 100.0 37 GCCCGCTTCCCTCTGGGAAGTGGAATTAATGGAAAC # Left flank : GAATGAAAAGGGCGATTGCGAAGCACTCCCTTTGGGCGATTGCTCTCATACAGCTCTATTTTACAGCACTTCCCCCCTGATAAAAGATTGACGGTAAACGTTTTCCGTCAAAGGATGAATCAGTTATTTTAAGGATTTTTGCGTATACTGTTTGACTAAATGTAGTTATGCGATTTGGTATTGTGTTTTATCGTATTGAGTCATAGCTATACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTTCAGCCATTATTTTGAGGGTAGTGGAGGTGAAAAACAGAGAAATTTTGCTGACCTTCGCAAAGTGGGTCTAGACACTAGTCAGGGCAAGGGCTTAAAATGGAGGG # Right flank : CACTCGGAGTTCCATAGCCCTTGGACACAATTGTATTGTTGACGTCGCTGTGGCAAATAACTGTATAATCGGGTATATACGTTGCCGAAAAGATGGAATATTTGGACTCTATGTCTACGACCTGCTCGTTTCCAAGCAATGGAGGGAAAAGGGACGAGGAAAACGTCTTATTGAAACTGCTGCTGCTGAGCAACCACGTACATGGGAACATTTTCTTGATGTCTGGGAAAATTAAACTCTTTCTCCATTGGCGATCGCATATCGAAACTCAGGGAGAATAACATACCACTTACTCCCAAATAGGATTTTAAGCACTCCCTATGGGAAATCGCATCTCATGGAGCGAATAAAACAACTTTTGAATATCCTATCTGTCAGGCGATCGCCCATCTTAGAACTCTCACTTCCTTACCCACATAAAACAACTACTCGAAACCCCTATACACAAGAGCGATCGCATCTCCTGGTGTTACCCCAAGAAATGCGATCGCCTAATAATG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCCGCTTCCCTCTGGGAAGTGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.30,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 1 13966-17924 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJHT01000020.1 Cylindrospermopsis raciborskii C04 NODE_20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================================== ================== 13966 36 100.0 34 .................................... CGAACTAAAAGAAAAGAATAAGCTTGTAAAACAA 14036 36 100.0 36 .................................... TAGAAAAAGAAATCAAAGACCTATCGTTTGGATTTT 14108 36 100.0 38 .................................... ACTCAGCGGACACAAATTTGACTTTAGCTACCAATGGA 14182 36 100.0 39 .................................... GCAATTTCTTGGCTCGCCCAAGAGCTGGGAGATCAGTTG 14257 36 100.0 36 .................................... ACCCCACACCAACCCCAACACCATGACCACCAACTC 14329 36 100.0 36 .................................... TTCACTCCAAACTTTTGGCAACGTAGACCTAATCCC 14401 36 100.0 35 .................................... AATAAACAACAAAAAAACCCCATCTAAGCAAGGGC 14472 36 100.0 46 .................................... ACATGGAAACAAAAAAAGGGATCTTGGAGTTAAAACAACTCCAGAA 14554 36 100.0 44 .................................... TCGAAAACCCTTACTGGGTCGAGAGATACGTATTTGAGTCTTTA 14634 36 100.0 37 .................................... ACTAAAGCTTATAATAAAGGAGATAGAGTATTAAAAG 14707 36 100.0 38 .................................... TAGGAGAAGAGTTAACAACAAAAAGACAATATCTAACA 14781 36 100.0 37 .................................... GAACACCCAACCCCACACCACCCCCACCACAATGAAC 14854 36 100.0 40 .................................... TGGGCATGCCTCCCCATTATTAATATATCATGTCAAGTTT 14930 36 100.0 36 .................................... TTTTTTAGCTGACAATAAGCGATAAACAATACAAGT 15002 36 100.0 36 .................................... TTTAGCCGCTAGTTATCCAACTAGCGGTTTTTTCTT 15074 36 100.0 36 .................................... AAAATCCGGATGGGTGGGATAGGATTTAAGAAAATG 15146 36 100.0 33 .................................... CAAGAAATAATAGTCAACCAATGGTGGTGCAAC 15215 36 100.0 34 .................................... GCTCATATGGAAAGGGATTTAATATCTAATTACT 15285 36 100.0 37 .................................... AGCCTATCAAAATAACTTATCTCCAAAATAAGAAAAA 15358 36 100.0 38 .................................... ATATGGCTCTAAGCATTCGAGCCACTCTTTACTTAAGC 15432 36 100.0 41 .................................... TTTCTATAAATATAATATAACCTGATTCTTTAGCAATGTCA 15509 36 97.2 37 ..............................A..... AACCAGGAGATATTCCTATTGGACAACGCAATGATTT 15582 36 100.0 38 .................................... GTTGAGTTAATTTCTGGTTATGAGTTACAAAGAGTACA 15656 36 100.0 37 .................................... ATGGGAAATGGTTGGTCTTCACCAGAATTTATGGGTA 15729 36 100.0 42 .................................... TTTTTCGAGTCTACGAAACCCAAGTTTTAAGAGTTATAGAAC 15807 36 100.0 39 .................................... ATTATTAATATCAGAAATAAATATTGTTTCTACAGATGC 15882 36 100.0 38 .................................... ACTGCGGTCTTGTCACCGTCTGCGTCGCCGTAGTTCAT 15956 36 100.0 40 .................................... TTTTCTACAGGTTTTGGCTTAGCTTCAGGGCGGGCTGTAG 16032 36 100.0 40 .................................... CTGTACAATGCGAGTGCTAAGTGATTTGACGACTCCTCAC 16108 36 100.0 35 .................................... TTAGAGAATCAGAGAAGAAGGGATACACTTTAAGA 16179 36 100.0 39 .................................... ACACCAAATATGCAGCTCCTAGCTGCCCATTGCCCTTTG 16254 36 100.0 36 .................................... GAATGTGACAGTATGTATGAAATCGATAGACGGTAT 16326 36 100.0 38 .................................... GGTAAGCCAGAAAACCACAACTTTAAAGTAACAGACAC 16400 36 100.0 37 .................................... ACACTATACGTAAACCAGTTTGTAAATAATACAATAG 16473 36 100.0 38 .................................... CCCTTAATGGGGTTTTTTTGTACCCCCCGACTGTACGT 16547 36 100.0 35 .................................... AAAAGAAGAGCGATAGCTAACTCCTAGTTAGTTAT 16618 36 100.0 36 .................................... CTAAACTCGTAGTCTGGGGTTCAGACATGGAAGATT 16690 36 100.0 41 .................................... GACAAACATATTTTTTCCTCCTAACTATTATCAATATACCA 16767 36 100.0 40 .................................... AAGCACTTCAAAATAATAATACTTACTGGAAAATATTTTC 16843 36 100.0 39 .................................... TCTGGTTCTGGTGAAGCCTGATTTATCATTACCTTGTTT 16918 36 100.0 40 .................................... TTCTAAACGATGGAATAGTCATTAGACACTAAAAAACCCG 16994 36 100.0 42 .................................... CATCCGTTTTGTTAAGTGTCCATTCTCAATTACGATACTTAA 17072 36 100.0 34 .................................... TTATTGTGATTATCAACATTAGATTAGCGGTAGA 17142 36 100.0 36 .................................... ATCTCAGCACTCAGGAATAGCCGAAACACGCGATTA 17214 36 100.0 42 .................................... GTAGACCGGAAACAACCCCGGGTAGACCGGAAACAACCCGGT 17292 36 100.0 35 .................................... TCACTTAGTTTTCTCATAGTTTAAAACCCTGTAAA 17363 36 100.0 39 .................................... TTGTTGAGTTAAAAAACAGCCCCAAGGAGGGGTAGGAAA 17438 36 100.0 47 .................................... GTCAAGACTCGTGAATACTTTTAGCTTCTGCTATGTTTTTAGCAGAA 17521 36 100.0 37 .................................... GATGCGAAAGACGGCATGAGGTTTATAAAGGCTGTAG 17594 36 100.0 40 .................................... TGACTTTGCTTTAGCTATGGTAGAAAGAGCAATAAGAATT 17670 36 100.0 36 .................................... AGATGGATTACAACAAATACCTGGCAATGATATACA 17742 36 100.0 37 .................................... GTTTCGTCACTACTAATGCTAGGCATTACTCTTTTAA 17815 36 100.0 38 .................................... GATGTACGATAGGATTTACGTACCCACAGGTCACCCTT 17889 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================================== ================== 54 36 99.9 38 GTTTCCATTGATTCCACTTCCCAGAGGGAAGCGGGG # Left flank : GATGACTACCTGTAATCCTTTTTAGATTCCATCCATAGCGTTCAACAATCTTACACAGAGACTTACCAGAAACGGATTTCATAAAGATAACTCAATTAACTGTTTTTGTGGTTCAACTTCTTCTTGCTGACTAGCAACTTCTAACCAACCTTGAACAGCATCTTTCAACATTTCTAATAAATGTTCGTAACTTTCACCCCAGGTATGACATCCTGGTAAAGCTGGTACAGAACCACACCATACACCGTCTTCTTCCCAAATAATTGCTTTTATTTTCATAGCCAATTCCTTAAACTAAGGATATTTTAGCGCAGGAGGAGTCAGACGTACCAGTTTAATAAAAATGAATAATCGCTGTTTGGGGAGTTGAGGAGGTGCGATCTTATAGCTTATTGTAGGCGATCGCTCTCATATTTTAAATTTCTCCCCATTCCTTAGCATCAATAAAAATAGAAAGATGCTTTTTATTGCTCGTGGCAATAATTACCTAAAGACAATGC # Right flank : GACCTCCATTTTAAGCCCTTACCCTGACTGGTGTCTAGACCCACTTTGCGAAGGTCAGCAAATTTTCTCTGTTTTTCACCCCTACCACCCTCAAAATAATGGCTGAAACCCTTACACCACAAGGCTGCGAGGTTCCCGACGAAATAATAGGCATTCCAGCGTTTTTTCCTGACCTTCGCATTCCCTTCGTTAATCACTGAATTTACTGTCTTTAATATCACTTTAACCATTAATCAATAATCTCAATACTAATCCTTAATTAATCCTTCCATTTATCCTATTATAACTGATTCATGCTCAAATAACTGGTATTCAAAAACAAAAAATTTATTGTATATTTTATTTTTGCTTAGACTAAAGTAAACAAATATCATATAGATTAAAACTTTACCTAACATGAATACTCAGATAATAATAGAATTGGGTAATTGCACTATGGGTACTCCCACTCCCCAAGCTTCTATTTGAGGAATGGTATGTTTAGACAAAGGATAAAATCT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTGATTCCACTTCCCAGAGGGAAGCGGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA //