Array 1 558147-559447 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT670846.1 Thermocrinis minervae strain DSM 19557 chromosome I Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================== ================== 558147 29 100.0 40 ............................. GCTCTATATTAAAAACTGTAGCTATCGCGTATTTATCAGT 558216 29 100.0 36 ............................. TCTTCTTCTAGGTCTTTCTTTTTATGCCTGTCGAAC 558281 29 100.0 38 ............................. ATACTTCTCTCTATCATACTCTAAAAACTTATCTCTTA 558348 29 100.0 42 ............................. GGCCTGGATGGTTAAAAGTGTTCTATGATGTACTTCCGTACC 558419 29 100.0 39 ............................. TCAAAAGTTTTCATGTCTATCAATATAGCTTAAAAATTT 558487 29 100.0 38 ............................. CCTGATGCTTCTATCTTGAGTTCTTTGAGCGGAAAATT 558554 29 100.0 40 ............................. TAGACAAATTTCAATAAGCACGCTTCTGAAGTGTATTCAT 558623 29 100.0 36 ............................. TGATTGAAATTAAATGGAGCTGGGATGTTTACTAGA 558688 29 100.0 37 ............................. TACGGAGCACGCACGATATTGGTGAGATGGTAATGAA 558754 29 100.0 36 ............................. GACCTGGTTGCTCTTGGTCTTCAAGCTCTTGTAGAT 558819 29 100.0 37 ............................. CCGTGGCTTCGTGGCTTCTTACGAAGCCACTTCGCCA 558885 29 100.0 39 ............................. TTTGTTTAGCTGCACTGGCTTGTATGTCTTGATCTCAAC 558953 29 100.0 36 ............................. CCGCTTATAAAACGCACACGTACAGCACCCACTACA 559018 29 100.0 37 ............................. GATGATTACCGGCGCGCTGTTGTCTGGGTTCAGACAG 559084 29 100.0 37 ............................. ATACAGTGAAGCATTGTATTCAATTAACTTAGACGAG 559150 29 100.0 37 ............................. AATAACTGTTTCAATCGCTTACGTGATGCAGATGAAA 559216 29 100.0 39 ............................. TGCTTCATGGCACCTACCTCCTTTAAAAGATTTTTACAA 559284 29 100.0 39 ............................. CATCGATCTCGTTAATCTCTGCTTTGTAAGTAAAGTCTA 559352 29 100.0 37 ............................. TGATTTTCAAGCTTTAGCAGTTTTCTGAAATTATGAA 559418 29 89.7 0 .........................G.GT | G [559441] ========== ====== ====== ====== ============================= ========================================== ================== 20 29 99.5 38 GTTTCTAATCTTCCTGGTGGAGTTGAAAG # Left flank : ATCTCTAACCTTATATTCTGTAGAGTCGTGTTGTGAAGTTGTTGATACTCAAAGTGTTCGATGGCATAGTTTCCCAAAAATCAAAGATTACCATCCTTGAGGTGTTAAAAATTTTGTCGTTCAGTTTTACTGCCATATAGTCCTTGCAAGACAAAAGTTTTATAAGGGTACTTTTGGGAATACTTTTGGAAAAACGCAATTTTTGCACTTTTTGACCTTATGGGTGTCTAAAACTGATGTGTATCTTTTAAAAAGCTTGAAAATCAAAGATTTGTGAAGGGTATGGAGAGTCTTTATTTTCAAATTTTTAGATATCTGGATTCCTCATGTTTATGCATTTCTGAGGCTTGATACTCAATGACTTTAGGAGGGTGAAAGTGCTGTTTTTGAGGGTCCTTCTGGCCCACTGGCGGTTTCCGGAAATGCACCTTCACTTGAAGGGGGTACCCCCTTGACAAAATCTTTGAAGTGTGTATAATAGATAGATAGGTAAAGTTGAG # Right flank : TTGAAAGGGTAGACTGTTAGGTTTATCTTGCCTGTAGCCAGACTTCTTTGTCATTGCCAAAGTTGTAGTGTTTCAAAGTCCTAAGACCCTGTACAGGCTTACATGTTATCAGGTAATCCCAGTTAGATAGGTCTGGAGCTTTTAGCGGTTTGCCTTTCCATATGCCTACATAGACGCATAAAGCCTTAAGCTTGATGCAGTCACATGCTACTTCCGAAGTACCTACCACCTTCATCATTTCCATAGCTGCAGATTTCTTTTTGTCGTATATTGGAAAGAAGAAAGCACCGTAAAGTATTCTAAGGATGATTACGCCGAGTATGGTCCAGAAGAAAACTTTTCTGAAGGTTTGTGAGAGTTTAAAAGCCTTCACCACGTAATAGGACATAAGAATAGCCATCAGCGGGTAGAGGGGAAGGATGTACCTACCTGCATTACCAGAGAGCAGATAAGGAAGGGAATTTACTACCAAAACCAATAAGAGAGGCTTGTTTGGAACG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTAATCTTCCTGGTGGAGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 790704-791793 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT670846.1 Thermocrinis minervae strain DSM 19557 chromosome I Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 790704 29 100.0 38 ............................. GCATGTAAAGCTCGGGAGCTTCAGGTTCACTGCGGAAG 790771 29 100.0 36 ............................. GGCTGTGATAAAGATCTTCCTATCCATGGCTTACCT 790836 29 100.0 37 ............................. CAGGAATAGGAGTAGCAAAACTAAACTCCACCTGGAA 790902 29 100.0 38 ............................. GGCCTGAGGGGATTAGCATGACTCCACTGAGAGGTACT 790969 29 100.0 39 ............................. GCTATCATTCAAAGCAACGTCCCTGGCAAAGATCTTCAA 791037 29 100.0 36 ............................. TCGGGTTCTCGTGGTGGTAAACGGGGGATTATAAGG 791102 29 100.0 39 ............................. TGAGAATCAACGACTTGCCGGTTTTGTTATGCATGTTAT 791170 29 100.0 37 ............................. TTGAGATGTCACCGTAGTCGACATTAAGAACAAGGTC 791236 29 100.0 36 ............................. CTGGCCAACCTTACTGATGCGGACCTGTTTGACAAG 791301 29 100.0 37 ............................. TCGTTTATCAAGCTCAGGGTAATGTGCGTATCCTTGT 791367 29 100.0 37 ............................. TCGTGAGCGGGATTATACTTTTTGAAGAGGGTAAAGC 791433 29 100.0 38 ............................. CAAGGCCGCATATCGTACATAAAAGAGTCTTGTATAAG 791500 29 100.0 37 ............................. GCACGTACCCAGTCCCGTACGGAACACGTACTGCATT 791566 29 100.0 38 ............................. GGAAAATTAGAACCCCACCCTGGCCGTGGGTGCTGTAC 791633 29 100.0 38 ............................. CAGCTGTATTGCTGTGGCGGCCTTGATCTTGACTGCTT 791700 29 100.0 36 ............................. CGGTACTGGCAGGAGGGAGTTTTATACTCATCGAGA 791765 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================= ================== 17 29 100.0 37 GTTTCTAATCTTCCTGGTGGAGTTGAAAG # Left flank : TTTTCTTAAGAGTTTTAATACAGGTACTTTTAAAAGCCTTGAGACTCAAGACTTCTACGAGATTTGTTTTTACGAAAAACAAAAGGTTGTAACTTTTATGGTATAAAAAATCCGCTACATTTACTCCCTACCTTTCTCATCCTTGTAGTACAAGGGTTTTGTATGGGTACTTTTGGAAATACTTTTGAAAAAACGCAATTTTTTGCACTTTTTGACTTTATGGGTGTCTAAAACTGATGTGTATCTTTTAAAAAGCTTGAAAATCAGGGATTTGGGAAGGGTGTGGAGAGTCTTTATTTTTAAATTTTTAGATATCTGGATTCTTCATATTTATGCATTTCTGAGGCTTGACACTCAATGACTTTAGGAGGGTGAAAGTGCTGTTTTTGAGGGTCCTTCTGGCCCACTGGCGGTTTCCGGAAATGCACCTTCATTTGAGGGGGGTACCCCCTTGACAAAATCTTTGAAGTGTGTATAATAGATAGATAGGTAAAGTTGAG # Right flank : GTGTTGTAGGGAGTTATACTTACAAACAAAGGAGTGTTTGCCATGAGGAAGTACGCTGTGTTTCCTGTGATCTTGTTGCTTTTGGCGTTCAGCTTTAGCAGTGGGTTTTTATTTGACCATCTAGGCAAGAAGGAAGCAGTGGTACATCATGTAACGGATGGGGATACCATAGTGGTGATAATAGATGGAAAGAAGGAGAGGGTGAGGTTGATAGGGATAGATGCTCCAGAGAGTAGCATAAACCCAAGGATCGAAAAGCAGAGGTCTTTAGGAGATGTTCAGACAATTCTCAAGATGGGACAAGAGGCTAAGGAGTATGTGCAATCCTTAGTAAAGCCGGGGGACAAGGTGTACCTAGAGTTTGATGTCCAGCAGAGGGATAAGTATGGAAGATTGCTGGCGTATGTGTATTTAAAAGACGGAAGGATGCTAAATAAAGAGATAATATGCAACGGCTATGCCATGCCCTTAACCATACCACCCAACGTAAAGTATGCAGA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTAATCTTCCTGGTGGAGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 3 978330-977304 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT670846.1 Thermocrinis minervae strain DSM 19557 chromosome I Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 978329 29 100.0 39 ............................. TTTAAGAAGAACCGCCGCGGATTTGATGTCTTGAAGCTG 978261 29 100.0 37 ............................. TTCGCATCTGAAAATCGCATGCATTTGATAAACGCAC 978195 29 100.0 37 ............................. GGATGGGCGGAGCAAAGCTAAACTCCACCTGAAACGT 978129 29 100.0 36 ............................. TAAGAGAGATAAAAGGATCTGGCATGCTTAAACTTG 978064 29 100.0 36 ............................. GGTTGAAAAAGAGTACGGGCTAAAGATCTTGGCCAG 977999 29 100.0 39 ............................. GCTATCATTCAAAGCAACGTCCCTGGCAAAGATCTTCAA 977931 29 100.0 36 ............................. CTCCTCCCTCCCTGGATAATACCTCGTGGCGTAGTG 977866 29 100.0 36 ............................. CTGGGTATCACGGGGATATCACGATAATGGAGCGGA 977801 29 100.0 36 ............................. TTTCCATCACTACCATAAACAGTGTATGAGTACGGA 977736 29 100.0 36 ............................. CGCTTTACACCACGAAGAGAAGAAGAAACACGTATA 977671 29 100.0 40 ............................. GGCTCGGGGAAGTCTTATTACGCGGTCAATTATCTTTTGA 977602 29 100.0 37 ............................. TATAAGGGCATGGGTTGGCATGGTTTTTGCTGTGGGT 977536 29 100.0 40 ............................. TTTCCAGGCACATAAGCAGAGACTTTTATATAACTCTTGT 977467 29 100.0 39 ............................. CCGGCTGATATGCTTAAAGACCTTCCGTGGCTTCGTGGC 977399 29 100.0 38 ............................. GAAATTATGCAAGTGTTTAATAAACCCACTACCACCCA 977332 29 93.1 0 .......................C..G.. | ========== ====== ====== ====== ============================= ======================================== ================== 16 29 99.6 38 GTTTCTAATCTTCCTGGTGGAGTTGAAAG # Left flank : GATAACTATCATAAAGCCAGTTCGTAAATACACTAGAGGTAGAGATCCCCTTACAACTTCAAGGATCAGAAGGAGACCAAAAAGACAATGTGTGCATCTTTAGGTTCCAAAAATCGAATCTTTAATATCCTATTCTAGAGTGCTTGATATACAAGGATAAGATATACAAGTTTTTCACTTTACTTGAACAGAAGTCGGTTTTTTGTATATCTCAAGTTTTTACATGTCTAAAACTGATGTGTATCCTTCAAAAAGCTTGAAAATCAAGGACTTGTGAAGGGTATGGAGAGTCTTTATTTTTAAATTTTTAGATATCTGGATTTCTCATATTTATGCATTTCTAAAGCTTGATACTCAATGACTTTAGGAGGGTAAAAGTGGCGTTTTTGAGGGTCCTTCTGGCCCACTGGCGGTTTCCGGAAATGCACCTTAATTTGAGGGGGGTACCCCCTTGACAAAATCTTTGAAGTGTGTATAATAGATAGATAGGTAAGGTTGAG # Right flank : GATAGAGACTAAAGATTGGGTTGAAACCAAGAAAAGAAAAGGCATATATTTGATATTTATCAAGCCAAGCGAGGTGCAACGGATGGAGAGAAAGGAAGATATAAGGCCCGAAAGTATGGAGGAAATAGCTCAAGAGCTAAGAAACTCCATATACAGACTTTTTGACCTTTTTCTGCCACCCAAAGAACTAAGGGAAGAAGTAAAGAAGAATCTTTATATGGCTGAGCTTTACCTTCTTAAAAGCATAAAGGCCATAATAGACTACAAAGTATCAAGTATAGAGAAGAGAGTTGAAGGGAAAGAAAAGCAGAAGGAGAAAGAAAGATCAAAGAGGATTCAGGTGGAATAAGGCTCTCACCTCACCCACAAGGTATAAAGAACCTAACACCAAAAGATCTTCGTCCAAGGTCAACAACTCCTCTATCCTTTGTAGAGGAATAATCCTTTCAAAGTCAAGCTCTTTTGCACCTTGTATAAGGTTTTCAAGAGTTTCACCCCTG # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTAATCTTCCTGGTGGAGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.10,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 4 1331445-1331019 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT670846.1 Thermocrinis minervae strain DSM 19557 chromosome I Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1331444 29 100.0 37 ............................. TGAAGTTTTTCATAATTCTAAATGTAACTTAAAAATT 1331378 29 100.0 38 ............................. ATTCAATTACGTCAGTATCGTTAATTCCTATATAGAAC 1331311 29 100.0 38 ............................. TGTAAAGGTGTGTGTAGACACCGCACCAACTAGGCCAT 1331244 29 100.0 36 ............................. GTGGCTGATATGCTTAAAGACAAGGAAACCAGGATC 1331179 29 100.0 37 ............................. CAAGCTTTCAGTATTTACTTTGGTAGTTTGATGTTAG 1331113 29 100.0 37 ............................. TCATTTTTCTCAACATACTTAGTCACATAATTGAATA 1331047 29 96.6 0 ........................A.... | ========== ====== ====== ====== ============================= ====================================== ================== 7 29 99.5 37 GTTTCTAATCTTCCTGGTGGAGTTGAAAG # Left flank : TTTTTTAGAGTGGTTCTTTAAACTTTACCCTTCTCAAGTCTTTGGAAATCACCAGGATCAGTGGGGTCTTTGGAGCAGAAAACGAAAAAGTTCACCTTTATACCAAGTAAAAACTGCTCTTTGATTTCTTGCCTTTCTGGTGTTTGTAGTACAGGGGTTTTGTAGGGGTACTTTTGGGAATACTTTTGGAAAAACGCAATTTTTACACTTTTTGACTTTATGGGTGTCTAAAACTGACGTGTATCTTTTAAAAAGCTTGAAAATCAAGGACTTGTGAAGGGTATGGAGAGTCTTTATTTTTAAATTTTTAGATATCTGGATTTCTCATGTTTATGCATTTCTGAGACTTGATACTCAATGACTTTAGAAGGGTGAAAGTGCTGTTTTTGAGGGTCCTTCTGGCCCACTGGCGGTTTCCGGAAATGCACCTTCATTTGAGGGGGGTACCCCCTTGACAGAATCTTTGAAGTGTGTATAATAGATAGATAGGTAAGGTTGAG # Right flank : GAATAAAAGCAGTTTGTAGGATCATGCATCAAAATTTGGAAGAAAAAAAATAAATACTCATGAGATCTGTACTCATCTACAGGCGCGGGGGTCTTGGAGATACACTCCTTGTATTCCCTCTGCTTGAGATCTTCAATAAGAAGGGTTATAGAGTGGTGGCAGTTGGAAACACGGACTATTACAGGCTTGCTGAAGAAGTAGGTTGGGCTGATTTAGTTCTGTCTGAGCTCCCACCGTGGGACGGAGAAAGGGTAATAATTTCCTACGAGGGTAACGTAAAGCCTTTTCCCGAAAAGAGGATTTGGATAGTTCAGCACTACCTGGAAAGCTTAGGACTAAAGGAGGATTTCTCTCAAGAGTTACCCATACAGGCTTCAAAGGGTGGTCCGTTAGAAGGTGTGGCGGTTCTTCATCCTTCAAGTGGTTCATGGAAGAAAAACCCAAAGCTTGAACTCTTTTTGAGTGTAGAGGAAGTTCTCAAGAGAAAAGGCTACAAGGTT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTAATCTTCCTGGTGGAGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.10,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 5 1342204-1341711 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT670846.1 Thermocrinis minervae strain DSM 19557 chromosome I Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 1342203 29 100.0 37 ............................. GTACCTGTCTCCGCGTTTATGTATTTCTTGTTAGGGT 1342137 29 100.0 39 ............................. CGGAGCATCTGGCTTGGCCTTGATCCAATCGTAGGACTG 1342069 29 100.0 36 ............................. CACATCATATCCGCGATGCCCCAGTTGCGGCATTTC 1342004 29 100.0 36 ............................. GGAAAAAGTTCAGGAAGAAGGTCTAAGCGTGGTGTG 1341939 29 100.0 37 ............................. CCTGATGCTTCTATCTTGAGTTCTTTGAGTGGAAAAT 1341873 29 100.0 38 ............................. CTGCTTCATCGAAATCATCAAACACAGTCGCAATATGC 1341806 29 100.0 38 ............................. GACAAGCTGCGCATCTTTGCAGGAGACTACACAAGCAT 1341739 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================= ================== 8 29 100.0 37 GTTTCTAATCTTCCTGGTGGAGTTGAAAG # Left flank : ATTGTAAAGGATAACTTTTTTAACCTTGACATCTAGAACCCTTTAGAATCAATAAGATAAATGAGGTGCCTTGAGCAAAAATTGTAAATGTATATTTTTTAGGCTCAATAAAACTGCTCTTTGATTTCTTGCCTTTCTGGTATTTGTAGTACAAGGGTTTTGTAGGGGTACTTTTGGGAATACTTTTGGAAAAACGCAATTTTTGCACTTTTTGACCTTATGGGTGTCTAAAACTGACGTGTATCTTTTAAAAAGCTTGAAAATCAAGGACTTGTGAAGGGTATGGAGAGTCTTTATTTTTAAATTTTTAGATATCTGGATTTCTCACGTTTATGCATTTCTGAGGCTTGATACTCAATGACTTTAGGAGGGTGAAAGTGTTATTTTTGAGGGTCCCTCTGGCCCACTGGCGGTTTCCGGAAATGCACCTTCACTTGAAGGGGGTACCCCCTTGACAAAATCTTTGAAGTGTGTATAATAGATAGATAGGTAAAGTTGAG # Right flank : AGTTGAAAGAAGGGGGCAGAGCAATGGATAGAGATGGGTCTTGGAAGTATTACCTTCTAGCTTTCATGGTTCTCTACTTACTGGTGAAGCTAAAGAAGCACTCCGTAGATTGGCCTTCCCCTTTTGAGATCCTACTCCTTCCCTTCCTCGTTTTTCTCGTTGTGTTTGCAAGTTTCGCTATTTACATTTTGCTCGGTTTCCTGTTTAACACCGTTATCGACACCATAGCAGAATTCCTAGTAAAAGTGCTAGAAGTCATATTTGGTATCCTTAAGCGCATTATTCGCATCCTGCTAGACATATGGAAGTGGTTTTGGTCATGAAGCTGGATTTCTAATCTTTCTGGTGGTGTTAAGAAGGCTTTTTGAAAACTGCAAACATTACCAGTCCAAAAAAGCTTTCCTTGTAATCTACAAGCTCAAAACCAAACTTTTTCGTTTCCCTTGCGAGCTCTTCCTTTGATAAGCTGTTTTCTATAGAATGCACGAAAAACTCCCACT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTAATCTTCCTGGTGGAGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.10,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //