Array 1 5496-7974 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFUY010000042.1 Streptococcus suis strain SS286 SS286_Scaffold42, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 5496 36 100.0 30 .................................... TTATATTCGTCAATGATTTCCTGCACCGCT 5562 36 100.0 30 .................................... TGACATTAAGTATATTCGCAGTGCCAATCT 5628 36 100.0 30 .................................... AATTACCGAAGCAGCTGCCAAAGCAGACTT 5694 36 100.0 30 .................................... CAGAAGTAAAAGTTTGTGGTATCACTTATT 5760 36 100.0 30 .................................... AGCAGAAGACCAGCTTTACTACTTCCAATC 5826 36 100.0 31 .................................... TCGGCTAACTCGTATTCTTTAGCCAAGTAAG 5893 36 100.0 30 .................................... TCCGCTAACAACACACTTTACCGTCAAGTT 5959 36 100.0 30 .................................... AGTGACTTTTCAAGCACTCCCTTAATAGCT 6025 36 100.0 30 .................................... CCCGTCAACGCTTCCAGCTTGACACGGTTT 6091 36 100.0 30 .................................... TCGAGTAACAACAGTTGAGAATGTAGTTGA 6157 36 100.0 30 .................................... AGCAACCAGACGGAAGATTGAAACTATATC 6223 36 100.0 30 .................................... AATGCACTGGCACAGATATTCCAGAAGAAA 6289 36 100.0 30 .................................... TGTATTTCAAGGGCTTTCTGTTACTGGTTA 6355 36 100.0 30 .................................... CAAACTTACCATGATTTTCTTGTAATGCGT 6421 36 100.0 30 .................................... ACGAGCATTACCAGGCTAACTATCTTACCT 6487 36 100.0 30 .................................... TTACGATTGGCATAGTTATTATCAATATAA 6553 36 100.0 30 .................................... ATAAATATTAGAGCGTGGGCAGATTCAGTT 6619 36 100.0 30 .................................... ATATAACCGAATGAATGTTTGTTAAAACCT 6685 36 100.0 30 .................................... TTAAAACAAGGAAAAAAAGGAGAATAATAT 6751 36 100.0 30 .................................... AGAAGAGGCAGCTCATGTAGCAGACACTTA 6817 36 100.0 30 .................................... CTTAAAAACTAAATTTTTTCTAATAGCCCA 6883 36 100.0 30 .................................... CTCAGAGACGAGATTATTGCCAGAGATGGT 6949 36 100.0 30 .................................... AAGATACGCTCTTTATTAACCCAAGCTTTT 7015 36 100.0 30 .................................... TTATAAACGCATGAAAACTCAAGCTCTTAA 7081 36 100.0 30 .................................... GTCTGGCATGGATATCGATGGTGATGTTAT 7147 36 100.0 30 .................................... TTCTTACCTATCTTGTTGATCTTATGAACA 7213 36 100.0 30 .................................... TCTTTCGTTTTAAATTAGAACCTTCTAGCT 7279 36 100.0 30 .................................... AAACAAAGAATTTAAAACATCGTTGAACAT 7345 36 100.0 30 .................................... CATTGCTTGCTCAGCTTCAGCTCTCAATGC 7411 36 100.0 30 .................................... TTAATTTGTGTTGTTGTATTTGTTTGCCAC 7477 36 100.0 30 .................................... TCGCCACTAGAACGTAAACATCGTTATTAA 7543 36 100.0 30 .................................... TGAATTTCAATGTTGAAATAACGATCGCCT 7609 36 100.0 30 .................................... TTCTCCTATGGATTTTAGAAATTTTAAGTG 7675 36 100.0 30 .................................... AAATGACGCAAAAGTATATAAGAATCTTAG 7741 36 100.0 30 .................................... CGTTCATTTTAGTTCCATGCTTTGCGGTAT 7807 36 100.0 30 .................................... CGTTCATTTTAGTTCCATGCTTTGCGGTAT 7873 36 100.0 30 .................................... CGCGTCTTAATTTCCCATCGTCCACGCTCT 7939 35 88.9 0 .........................A.-.A.....G | T [7972] ========== ====== ====== ====== ==================================== =============================== ================== 38 36 99.7 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Left flank : GAAAAACCAGAAGTGAAATCAATTATTGAAAAATTAGCAAATTCTATTACTGAACTAATCTCTTATGAATGTTTAGAGAATGAGCTTGATTTGGAGTATGATGAGATTACGGTTTTGGAGTTGATAAAGGCGTTAGGGGTCAAAATTGAAACTATCAGTGATACGATTTTTGATAAAATTTTCGAGATTTTACAAGTTTATCAATTTTTGAATAAGAAGAGATTTCTTGTCTTTATCAATGTGTTATCTTATTTGACAGTGGATGAAATTCAGAAAACTAGGGAGTATATTGAACTTTCCAATATGGATGTTCTTTTTCTAGAACCGAGAAAAAGAAAAGATTTCCCTCAGTATGTTTTGGATAAAGACTATTTCTTACTATCGGAAAATATGGTAAAATAAATACATACAGTACAAATATTAGAAATTATTCGAAACTGAAGTCTGGCTGAGACGAATGGCGCGATTACGAGATTTTGTGACAAAAAATAGTCTACGAG # Right flank : GCAGTAAGTTTATAAAGGAGGGGAGTAATTGGATGTCAAAACTGTTATTTTTTAATACTTCTATTTCTAACAGTAGTAGTGAATATTGTAACTTTAATTATCAAAAAAATCACTAAAGAGATCGAAAGAAATAAGTGGGGATGAAATTGATAAAGAGCTTAATTTGATAGGTCTTCCTGATTAAATTCTACTTTATATCACTGTTTTAATTTTTTCTAGTTTTTACGATAGCCTAGAAAATACTGTCGAAATTAATTCCCCTCCATTTTCCTCCAAGATTTCTAACTCACCCTTGTACCATCCCCCTTTTCCATGATATACTATATGTAATCGTTTTATTTCAAAGGAGACAAAAATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAATTTGTGACGGACGGGATGATTGTTGGGCTTGGAACTGGTTCGACGGCATACTATTTCGTGCAGGAGATTGGCCGCCGGGTTGCGGAAGAGGGCTTGCAGATCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.80,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //