Array 1 25125-24618 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGO01000010.1 Carnimonas nigrificans ATCC BAA-78 L881DRAFT_scaffold00001.1_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 25124 28 75.0 32 ...GT.C....A....A.G...T..... CGACCTCCACAGTCGCCGGGGCTTTTGTTTAT 25064 28 100.0 32 ............................ AGTGCTGATAGCCACGGAATGGTTTACGACTC 25004 28 100.0 32 ............................ ACTCAGTTAGATGCTATCCACCGGCAGCAGAC 24944 28 100.0 32 ............................ CGCACGACAACGGTGGTCGATGACGGAACACG 24884 28 100.0 32 ............................ TGGTGCCCGTTTGTTAGATTCAGCCACCGCTA 24824 28 100.0 32 ............................ AAGGTGGAGATAGAGCGATTATTTCATGGAGG 24764 28 82.1 32 AG..........AT....G......... TACCCCGGCGAGGGGCAGTACCCAGGTACCAA 24704 28 85.7 32 ...T.......TA.......T....... AATGGAGTCGACCAACGTCTGCTTGTTGCTCT 24644 27 71.4 0 .....T..T..G..T.....GG-.T... | ========== ====== ====== ====== ============================ ================================ ================== 9 28 90.5 32 GTTCGCTGCCGCGCAGGCAGCTCAGAAA # Left flank : CAAACTGAAGGAATCCACCATTCTGCTATTGGAAGATGTGAAAGAAGCTTTTTATGCTCTTGAAAGAAGCTTCCTGCAGCTTCTGCAAAGCGTGGATACCACACAGATCAAGGCAATTTGCCTGGGAGAATTCACCGACTGCAAGGGGCCGCGTGATACTCCTGAGCTTCTGCCCATTTTCAGGGAGTGGGCGACACCACTGGGCATTCCTGTATTTGCGGGTCTGGCGATGGGGCACGATGGGAATAACCAGGCATTTGCGCTAGGCGCTGAGGCGCAATTGAGTTCAACCGAAATGAAATGGAAGAGCACGCAATAATTCAACTACAGAAGTTCCCCGAGCACATGCAGTTACACGACTACATTTAAAATAAGCACGGAACCATGGTGGCAGGGCTTTGATGGAAAGTGAGCATGAGACTACCGACGCTTCCCGCAACGCTTTTTGTCTGTCGTCACCAGCAAAAGAGTTTCCCGCATGGGCGGGGAAAACCGCATCT # Right flank : CCGGATTCTTACGATAAAGACGTACTTGGAATAACTCTGGGGCAGGGCTAATATCGAACAGCGCAAAAGGAGTACAAAATGAAATACGCGATTCAGGTGGCACCTGATTCAGCCGGTTATATGGCTACGTGTAGAGATCTCTCTAAATTCATTGCTGCTGGCGATACGGTAGAAGAAACACTGAAAAACTCGGTAGAGATGCTGGAAACAACTATTAGCATCTATATCGACGACCGCGAATCTTTGCCAGCATCAACAGCCGAGCAGGAAGGGGAGCACTGGGTGCGTGTGCCAACCGCTACGGAGTTTAAGGTGATTATTTCCAACGAGATGGTCGCTCAGGGGATTTCGAACGCTGATCTGGCGTATCGAATGGGTACTCATCCATCCCATATTGACCGTCTGCTGGACGTGAATTATACAATAAAAATGGACGTATTTGATTCCGCCATTCTGACACTGGGTAAGCAATTGGTAGTGACAACCGAAACAGCGTTATA # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.53, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCGCAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCGCAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 45402-44414 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGO01000010.1 Carnimonas nigrificans ATCC BAA-78 L881DRAFT_scaffold00001.1_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 45401 28 100.0 32 ............................ AGTGTTATCGGACGAGCGCATGTAGCCAAGCA 45341 28 100.0 32 ............................ GTCAGCAATGCGAGCGTTCCAAGCGTGGAAAG 45281 28 100.0 32 ............................ TATCGTTGGCAAAGTGGTATGGCGTGGAGGGA 45221 28 100.0 32 ............................ ATTGGCGATGCGTCGCAGCGGTCGGGAAATCC 45161 28 100.0 32 ............................ TTAACGCTTGATTGGCGAACACCCAGGGCGGC 45101 28 100.0 32 ............................ CGCTGTCCGGTGCTCTTTGATAACGTGGTTAA 45041 28 100.0 32 ............................ AAAATTCAAAACATCATCATCAGCCACCTGAG 44981 28 100.0 32 ............................ AATATTCAATCTGTTAAACGTCATCGAAATTT 44921 28 100.0 32 ............................ ACTGTTGTCAGCGTGGTCGCGTCGTATTTCCT 44861 28 100.0 32 ............................ AGTAAGGCATGGTGAACCGAGCAGAATCGCCA 44801 28 100.0 32 ............................ ATTTGCTGAGGCCTCAGCAACAAGCGATCCAG 44741 28 100.0 32 ............................ AGTAGGTATCAACTGGGAGGTGCGAGTTATCT 44681 28 100.0 32 ............................ ATTGGCCCGCGGCTGGATAGCCATGAGAGCTG 44621 28 96.4 32 ............A............... TCCATGACTGATCACACGCTGCTGCCTCCCAA 44561 28 96.4 32 ............A............... TTCAGTGATTTCTGGGCCTCTCGCATGGAGTT 44501 28 96.4 32 ............A............... AGTACGCGGACATGGCTAGGGGAGTAATGCAG 44441 27 78.6 0 .....T......A....T...-.T..T. | T [44418] ========== ====== ====== ====== ============================ ================================ ================== 17 28 98.1 32 GTTCGCTGCCGCGCAGGCAGCTCAGAAA # Left flank : ACCGTCAGATCAACATCTCTGTACGTGCGAAAGATCAGGCTGATACTCGTCGCGAGCTGAACAAGCTGCGTACCGAAGAGCCCGAGTCTGAAGGCCCGACCACCATCGGTGACCTGATCAAACAGAAACTGAGCCAGGACTAATTCCTGCCAGTGGCTGATTGATCAAAGCCAAGGCTAGCCACCACGGCTGAGCCTTAAAGGAAACGCCCTGCTATCGAAAGATGGCAGGGCGTTTTGTGTTTGGGCGTAATGAACAATTGAGCGATGAGTTTATTTTTCAGTGATTGCTTTAATCTGTACAGGGCAAACCTTCTCCCAATATGAGCTTGTGCCTAAAAGTCCTATCATGTAGCTACCCCTTGTCCAGACCCTTTTTATAACCACGTTCTCTATCCTAAATAAATCAACAGGTTAAAGACCCTTTGCGGAAAAGGGGGGGATATATGGGCAGGTTGGATTGTTGTTTGTTTATCAGTGAGTTACCTTTTTAGTGTTCTA # Right flank : CTTTATTAAGCGATGACCGTTATAAAGGTCAAAAAATGGTAGTCTACGGTCATCGCTCTAGCCTGTGTGAAGCACATGTCTATGTGCTGTCTCTGGTATCCTTGTGTTTATCACTGAAGGAGGATGGTAATGGAAGAGATAGCTTCAAATGAATTGAAAACCATTCTCCACTCCAAACGTGCAAACCTTTATTATCTTCAGCATTGTCGAGTATTGGTAAATGGTGGCCGTGTTGAATACGTTACAGATGAGGGCAGCCGGTCACGCTACTGGAATATCCCAATTGCCAATACCACATCACTTCTTTTGGGAACCGGTACTTCCATTACTCAAGCGGCTATGCGCGAGCTTTCCAAGGCTGGCGTTTTAGTTGGTTTTTGTGGCGGTGGTGGGACACCACTGTTTTCGGCAACTGAGGTCGATGTGGATGTTGCCTGGCTAACACCCCAGAGTGAGTATCGCCCGACGGAGTATCTTCAGCACTGGGTTCGCTTTTGGTT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCGCAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCGCAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //