Array 1 64888-63595 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVGU01000005.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CFSAN033857 CFSAN033857_contig0004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 64887 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 64826 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 64765 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 64704 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 64643 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 64582 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 64521 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 64460 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 64399 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 64338 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 64277 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 64216 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 64155 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 64093 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 63990 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 63929 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 63868 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 63807 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 63746 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 63685 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 63624 29 96.6 0 A............................ | A [63597] ========== ====== ====== ====== ============================= ========================================================================== ================== 21 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.13, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 83062-81020 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVGU01000005.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CFSAN033857 CFSAN033857_contig0004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 83061 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 83000 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 82939 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 82878 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 82817 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 82756 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 82695 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 82634 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 82573 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 82512 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 82451 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 82390 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 82329 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 82268 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 82207 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 82146 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 82085 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 82024 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 81963 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 81902 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 81841 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 81780 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 81719 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 81658 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 81597 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 81535 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 81474 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 81413 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 81352 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 81291 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 81230 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 81169 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 81108 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 81047 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 34 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //