Array 1 194792-196100 **** Predicted by CRISPRDetect 2.4 *** >NZ_WRZI01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain GR560 NODE_1_length_319658_cov_59.771401, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 194792 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 194853 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 194914 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 194975 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 195036 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 195097 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 195158 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 195219 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 195280 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 195341 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 195402 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 195463 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 195524 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 195585 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 195646 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 195707 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 195768 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 195829 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 195890 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 195951 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 196012 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 196073 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 22 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 212233-213404 **** Predicted by CRISPRDetect 2.4 *** >NZ_WRZI01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain GR560 NODE_1_length_319658_cov_59.771401, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 212233 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 212294 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 212356 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 212417 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 212478 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 212539 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 212600 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 212661 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 212723 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 212784 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [212826] 212826 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 212887 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 212948 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 213009 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 213070 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 213131 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 213192 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 213253 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 213314 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 213375 29 96.6 0 A............................ | A [213401] ========== ====== ====== ====== ============================= ================================= ================== 20 29 97.8 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //