Array 1 459789-460351 **** Predicted by CRISPRDetect 2.4 *** >NZ_PESN01000002.1 Prevotella intermedia strain KCOM 2069 contig2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 459789 36 97.2 30 ..G................................. CCACCAGACATAACAATTTCCTGAGCTATC 459855 36 100.0 30 .................................... TTTTTTTTGTTATTTCCATTTTTTAAAATT 459921 36 100.0 30 .................................... GGTAAGAGCAATAGCTAGAATCCGGTGGTC 459987 36 100.0 30 .................................... ATTCTTTTTTTTTATTCTTCATCGTAATCT 460053 36 100.0 30 .................................... ATTAACAAGCAATAAAATACAAATGAGAGC 460119 36 100.0 30 .................................... CAATAAGGAGTGAAAACAACAACAACAGAA 460185 36 100.0 29 .................................... GGAATAAGAAGGAATAAATTCCAAGAGTA 460250 36 100.0 30 .................................... CCTCCAATTGTTTTTATTTCGAGATCTTAA 460316 36 94.4 0 ..........................C.C....... | ========== ====== ====== ====== ==================================== ============================== ================== 9 36 99.1 30 GTTGCATCTGCCTGCTGTTTGCAAGGTAAAAACAAC # Left flank : TTGAGAACATTAAACGTGCGCACTATGAAGCTATACTGAAGGCACACCAAAGCATTTATAAATTGCTTAGGTTTACCACAGACACAGAAAACGACGACTGCATACTGGTGTGGGAACAGCCTAAGGATGGCGGAGAGAAAACTTATTACTTCAGACAAGCCAATATACGCCAATTCTTCAAAGAGCTAACCGAAGAGGTATACAACAAAGGCAATGGCATCTATCTATCAAAAGAGGTTATGTCGCTGATATTTAAATATAGAACCCTTGTTCATAAACTTTTGCTTGCTGAAAAGAACAACCCTGATGAGAAGATAATGATACATAAACGAGAGGTTGTAAAGGAAATGATAGAAATTAACCAGAGCCTCTCAATACAAATCAGAAAAGATATAGATTTACAACAACGAAATTTATATAACCATAATAAGAAAGGAAAAAAATACTGGTGGAAAAGAAAGAAACAAAACATATAAGAATCAAACAGTTAGGTTAGGTGC # Right flank : CTTATTAACAAGCACGGGAATGGAATTGGGAGAAGTAAAAACGGAAGGGGGAACACGCCTTTTAAGGGGTGAAGAAAGGCGAGAAAGGTGTAAATATTTTTCACAAGCAAAACTATTGCATAACTATCTCGTTATCAGCGCATTGTAAAACCTATTGTTTTGCAATGTAAAAGCGTAGGTTTTACACGGTAAAAGCGGCTCTTTTGCGTTGCAAAAGAGCCGCTTTTGGAATGTAAAATCGAAATTATGGTTTTCCTATGGAATTATCTTTACAAAATAGGAGTGGTTTTACGTCGTGGAAAGTGTAGAGGTTGTGGCGTGGATTCGGACGGCAGCACAATGGCGGCTTTGCCGATAGTGCGACATTGGCAAGGGTGGTTGGGGCTTTTGCATCGGCTCGATGCGGTGGCTCGTTCAGTTGTGTTGGCTTCGGTTGATGTGCAGCGACGACAGGAAAGCCGCTGTACAGAGCAAGATAAGATGTTTTATCATATCGTTAT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCATCTGCCTGCTGTTTGCAAGGTAAAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 1278216-1276173 **** Predicted by CRISPRDetect 2.4 *** >NZ_PESN01000001.1 Prevotella intermedia strain KCOM 2069 contig1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== =============================== ================== 1278215 47 100.0 30 ............................................... TGGGGTATCATTTTCTCCTACGAATAGAAT 1278138 47 100.0 30 ............................................... AAGATTTGTATAGCATTGAAGATAAGCGCA 1278061 47 100.0 30 ............................................... GCGTCCGATTTTAAGGCAGAAGAGCTTGTA 1277984 47 100.0 29 ............................................... AAACCCCGTTGCCATTATTGCACCATTGA 1277908 47 100.0 30 ............................................... AAAAAAGAAGCAAACAATATCATTTCCAGC 1277831 47 100.0 30 ............................................... TGTGTACTGAATTGTTGTTTGTCGTTTTCA 1277754 47 100.0 30 ............................................... GGAAAACGTCTACAAAGGCTACACGCTTGA 1277677 47 100.0 29 ............................................... AGGGAAAAGGCGATGAGCAAGAAAAACCC 1277601 47 100.0 30 ............................................... AAGTTTAATGCTGTTATTCGCAACGCCCCA 1277524 47 100.0 30 ............................................... ACGCCAGCAATGTTTAGAATTGGCAACATC 1277447 47 100.0 29 ............................................... TAAAAGTTGAAATATTACAAGACGAGATA 1277371 47 100.0 30 ............................................... ATGGAGCAGAGGCGGGAATACAGCTAATAG 1277294 47 100.0 30 ............................................... TATGTTCCATAATAATAAAAAAACGCCAAT 1277217 47 100.0 31 ............................................... ATGCTGTTCATAAAGCCTTAGGAATTACTAA 1277139 47 100.0 30 ............................................... TCGTTCTCTGATGAGGGCTTAACGCTTAAT 1277062 47 100.0 30 ............................................... GACGTTACACATCGGTAAAAAGGTAGTTGG 1276985 47 100.0 30 ............................................... GAAGAGGGAAAGCCTACACACAATGAAGAA 1276908 47 100.0 29 ............................................... GTAACAGTTAGAAATGGTGCGCAATTCGT 1276832 47 100.0 29 ............................................... TGCTATCCTCTTTGCCGTTTCGCTTTCGG 1276756 47 100.0 29 ............................................... TAAAGGAGCAGGAAAAAGCCAAAAAGAAG 1276680 47 100.0 30 ............................................... TTCGGGTTCAAATTCAAGTGCTTGCTTAAG 1276603 47 100.0 30 ............................................... CTACCGACTTTTTCAACACAACGGTATATG 1276526 47 100.0 30 ............................................... ATAGTAGGCGTGTATAAACGCTTCATTTTC 1276449 47 100.0 30 ............................................... TAAAGTATTTTGACACTGACAGGGATGGTA 1276372 47 100.0 30 ............................................... TTTACATTCCGTACATCGTGTGCCGCTTCG 1276295 47 100.0 29 ............................................... ACTTTAACGACTTTATGCGTCCACTTGCA 1276219 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== =============================== ================== 27 47 100.0 30 GTTGTGATTAGCTTTAAAATTAGTATCTTTGCATTGGTAAATACAAC # Left flank : GTGTTTTATTTTCAGTGGTTGCATACCTTCATTTGTTAAAGTCCGAATATTCGTTAAAACGACTCCGAAACTGTTAAATTTCAAAGCCTCAACTTCCGAATTACGGGCACTTTTCTGCACTTCAAATTATTTATTTGCAAATAACGCCATTATTTGCGTGCTACCATAAGTGCTTCGTTCATAGCTTCTTGCAAGCTTATAGGGTAGTGTTGTGCAACGAAACCATACCTTTTATGTTGTAAAACGAACATTTTTCTTCCTATATAGGCTATATTTTGCGCTTTATCATCATCTTTTCGCTCTGCAAAAGTGCCGTTCTTGCAATCCAAAAGAGCTGCTTTTGCACGGTAAAACCTATTGTTTTGCATTGCAAAAGCGGCTCTTTTACTTTTCGACCCCTATTTTCCTGCTCTCTTTTTCTCTATTTTCTCCTTTCCGCTTGTGTTAAATTTATTGCCCCATTTACTTGATTTTAGAACAATAAATCGGAAGTGTCGTTA # Right flank : TCAAATGGCTTAAAGTAATGAACATCAGTATTGTTACGAAAGCTTAGAGAGAAAGAAAAATGCAAGCAAAATAAAGTTCCACTCGTTAAGAATGGAACTTTATTGTTTCTAAAAGAAGGATTAAAAGAGTTCTAACTGTGCTCCAGGTGCATTTGGTTTTTGTGGTTTCTTACCATAGAATAGCTTTATTTCTTCAAATTGTTTGTCTGTAATGCCCATTATTCCAACTTTTCCGTATGCTGGAATAAAGGTGGAAACTCTTTTAATATGTACCTCCATATTTTCTTTACTACCACAATGACGTATGTAAATGGAGAACTGAAACATTGTAAATCCATCTTTCAGCAAGTTTTGACGAAAGAGTGAAGCTGCTTTTCGTTCTTTCTTTGTATCTGTGGGTAAATCAAAAAATACCATTAACCACATACTTCTGTATTGACTAAATCTATAAGTTTCCACTAATAGGCTTTATAATTCAGGATAAACCATTCTTCTTTGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTAGCTTTAAAATTAGTATCTTTGCATTGGTAAATACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.34%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.40,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //