Array 1 1570111-1576922 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031775.2 Shewanella decolorationis strain Ni1-3 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1570111 28 100.0 32 ............................ TTAAGCCATGAGCGAACAGATAAAAGATTTTC 1570171 28 100.0 32 ............................ TGTGAGGTACGCTGCTCTCGCCAAGCCTTTAA 1570231 28 100.0 32 ............................ AACAACAAAAGCTGAAGCAACTAAAGCTGTAT 1570291 28 100.0 32 ............................ GCCAGAAACAACAGTATAAGAAGTAAGGTCGA 1570351 28 100.0 32 ............................ TCGTATATCTTGTACGTCGTTAGGCGCTCACT 1570411 28 100.0 32 ............................ AAATCGACCTTATTTTAACTTGGTTATTAGCT 1570471 28 100.0 32 ............................ ATCTTGACGCGCGTGACAGCTTCAATCCATGT 1570531 28 100.0 32 ............................ ATATTTTTGACACATATTGCGGATTTTCATAT 1570591 28 100.0 32 ............................ CGTGAGGGCTTTGCGGAGCATGTTGTTCATTG 1570651 28 100.0 32 ............................ GTTGATAAGCGTTAGCGTTCTGCCACTTTCGG 1570711 28 100.0 32 ............................ GATAGGGCTGCCGTACGCATGTACGTCAACAT 1570771 28 100.0 32 ............................ GCGAACCGATAAAGAGTTACACCGTTACGCAA 1570831 28 100.0 32 ............................ ACATCGCGGCAAGCGCGACGGCGAACCATAGA 1570891 28 100.0 32 ............................ ACATGAACTGGGAAACGCTAACCGACGCACAG 1570951 28 100.0 32 ............................ TGAAAAAGAAACGCTCGAAGGGTTGCTCGATA 1571011 28 100.0 32 ............................ GTTACAGGTACTTCGTTAATCGCCACGGAACA 1571071 28 100.0 32 ............................ CATCAAGGCGTATAGATCGGCCAGCTTTGAGA 1571131 28 100.0 32 ............................ TTCAACGTTAGTAATCACTAAGCGCCCCTCTT 1571191 28 100.0 32 ............................ CATTCAAGGAACACGTAACAAAATCAAAATTA 1571251 28 100.0 32 ............................ GAATATCGGTAGGTGGTGCAAAAATACGATAC 1571311 28 100.0 32 ............................ TACAAACCAGAAGGCGATGTCAAGTTAGTAAA 1571371 28 100.0 32 ............................ CTATCGGCGTCACAGTAAATGCATCAAATACC 1571431 28 100.0 32 ............................ AGCTAGCGAAGGTGTTACCGGTTTAGCTAGGC 1571491 28 100.0 32 ............................ TTCAACTGCTGCACCTAAAGCTAAAACAGTCC 1571551 28 100.0 33 ............................ TATCTGGCAAGTACGCTGCAAGCGCTACTTGAT 1571612 28 100.0 32 ............................ TTATGAATCTTTTTACCGCGCTTTATAGACCA 1571672 28 100.0 32 ............................ TGCTACGCAAGAGTATACGCTGGATGGTATGG 1571732 28 100.0 32 ............................ GCGAATGCCGGCTTATCTCAGCCCAAGAGCAA 1571792 28 100.0 32 ............................ TCTACACCAATATTTCTCCCGTCATTCGTAAG 1571852 28 100.0 32 ............................ TTTGATGATAATGTTTACCCCGCGCAGGGCAT 1571912 28 100.0 32 ............................ TTTCCAAATAAGGATATGAAGTTACATCAGTA 1571972 28 100.0 32 ............................ TGATATTTCCTCAACGACATCATTAAAGTTTC 1572032 28 100.0 32 ............................ AGCAAGGTGCATGTCGCCACGCTTCTAGATGA 1572092 28 100.0 32 ............................ ATTGGAATGGGTACGGGGTTACATTGCCTAGG 1572152 28 100.0 32 ............................ ACAGGCACTAACGCCAAGGGGAGAACAGATTA 1572212 28 100.0 32 ............................ ACAAAGATGGGTAATGAACTTGTTCTTACAGC 1572272 28 100.0 32 ............................ TTTCAGCAAGTGTTGCAGCCAGCGGCTTAGGC 1572332 28 100.0 32 ............................ ACTAGGATTCATGCATGACACATTGCGCCACC 1572392 28 100.0 32 ............................ CAAAACGGCAAGAAAGGCGTGTTCTACGCATC 1572452 28 100.0 34 ............................ CCGATACAGCATCGTTTGCAGGCACTGTCACCTC 1572514 28 100.0 32 ............................ TGACATCAATGTTAGACCCGTTTATTCTATAT 1572574 28 100.0 32 ............................ AGACCGCGCCTGTCGTTGTTAACGTGCCTGCT 1572634 28 100.0 32 ............................ AAGCAAGTGTTGTAGTTCTCGTATGGATCTAA 1572694 28 100.0 32 ............................ TGCACATTCACAACGCAGTTAGTCGCTCTTGT 1572754 28 100.0 32 ............................ ATAATCAGTAACCTTTCACTCCCTTCTTTCTC 1572814 28 100.0 32 ............................ CTCAAGCCGATTGATTTAAAGGAGTTCTTGTC 1572874 28 100.0 32 ............................ AATTGGTTTATTAAGCGTAAACAGCACGACTA 1572934 28 100.0 32 ............................ TTGACTTCATCCTTGGCGGTTTTGCCGTAAAA 1572994 28 100.0 32 ............................ CCGCGCCGAGGTTGTAGGCTGCGCCCGCGTTT 1573054 28 100.0 32 ............................ TTTAGCATTAAATGCCGCTGCAAGCTCGATAC 1573114 28 100.0 32 ............................ GTGGCGAAGTCGAAAGCGATCAACCCGCCAAT 1573174 28 100.0 32 ............................ GATCAAGAATGGGTTAATTATGGCGCAGGGAC 1573234 28 100.0 32 ............................ TTGGTCGTGGGCTTTGGTGCACTCATAGAAGT 1573294 28 100.0 32 ............................ AGTAATTGCAGCTGTACTAATTGCTCCGACCT 1573354 28 100.0 32 ............................ ATTATCAGATGTGGCAATGATTACATATTTTT 1573414 28 100.0 32 ............................ AAGTTTTCGGTACCGAAAAAACGGTTAATCAA 1573474 28 100.0 32 ............................ TTATCATGCCTAAGTCAGTTATAGAAGATCCA 1573534 28 100.0 32 ............................ TACATTAAATTTTTCAACAACAAGAGATGCAT 1573594 28 100.0 32 ............................ GCGCCGCCGACCGCCGCATGATGGCCGCAGAA 1573654 28 100.0 32 ............................ TTGAAGGAACTTAGATGGATTGCCATCAATCA 1573714 28 100.0 32 ............................ TTATGGCAACGCCCGACCAGCTTCGAGCACTC 1573774 28 100.0 32 ............................ TTATGCAGGCGGTTACGCTTGCGCGGCTGACC 1573834 28 100.0 32 ............................ ATCCGGGCTGAAGAGCGTTTAGCGCTCGCTGT 1573894 28 100.0 32 ............................ ATCAGCGGCATATTCGGCTAATGCCGCTTGCA 1573954 28 100.0 32 ............................ GCATGGATTGCCAGTCCAGTCGGTGAAGAACT 1574014 28 100.0 32 ............................ GTACTGCGGATCACATTCGCCATTAATGCAAT 1574074 28 100.0 32 ............................ TCGCCAGCGTTGCTAAATAGCGCCTGAGAGTA 1574134 28 100.0 32 ............................ AAGAAGATTTCGACAAGTGGTTTGATGACAAC 1574194 28 100.0 32 ............................ ATTAAGGCCACGGCCTCGGCCATTTGCAGTTT 1574254 28 100.0 32 ............................ TTATAGTTTCCCAATTCAATGGTTATGCTCCG 1574314 28 100.0 33 ............................ CTCAAGCGAGGGGTTTTTGTTATATCATAATAA 1574375 28 100.0 32 ............................ AAAACAGCTCTTTCTCAGTGCCTTCACGGTCT 1574435 28 100.0 32 ............................ TTACGCAGAATCGCTTATCGAATACTGCATGT 1574495 28 100.0 32 ............................ CAGAGGATAAGCATTAAACGCCAAAACAGCTC 1574555 28 100.0 32 ............................ AACATCGCGCTTGGTTCTACGCAGCATTAAGT 1574615 28 100.0 32 ............................ CTCAGAACGGCGGTGTGGTTGGGGCGGCTATT 1574675 28 100.0 32 ............................ GTCAATCAAGATGTGAGTGGCGTTACCATCAC 1574735 28 100.0 32 ............................ ATGGTCAACTGACTTCAACGAAATGGTTCTCA 1574795 28 100.0 32 ............................ GCCATCGCAAAGTTGTCTTTAATGGTTTGAAA 1574855 28 100.0 32 ............................ TTTGCCGAAGAAGCCTATTTAATGGAGGTTAA 1574915 28 100.0 32 ............................ GTGAAGTGCTGCAACCTCCCTCAGAAGAACCT 1574975 28 100.0 32 ............................ GTTATGGCCTGCAGCACTAACAACTTTCTGCA 1575035 28 100.0 32 ............................ ATGAGTAAAAAGGCGGTGTTCATACTGGATCC 1575095 28 100.0 32 ............................ CCAAGGCCTTCTACGTTGATTTGGGTTGAGCC 1575155 28 100.0 32 ............................ CGCAAATTGGCGGTGTAACTCTTGGCCTAACT 1575215 28 100.0 32 ............................ CATTCAAGCGCGGCGCGGCTTTGTACCTTCTG 1575275 28 100.0 32 ............................ TGTTTGGGCGCCATTCAAACAGCTTCCTGACA 1575335 28 100.0 32 ............................ ATACTCGCGCTGTACAACACTCTTCGCATCTC 1575395 28 100.0 32 ............................ CGTCAGGTTGGGGTAAGTCTGGCAACGATGAG 1575455 28 100.0 32 ............................ TTGGCTAAAGAGTCCTTAACCTTGGCTAAAGA 1575515 28 100.0 32 ............................ GCATGCTCACCCTTGCCGACAGTCACCTCAAT 1575575 28 100.0 32 ............................ GCACTGAGCATCTATGTGAGCTTGCCAATTCC 1575635 28 100.0 32 ............................ AAGTCGTAGGATCAGTCTTATTGCCGTTTTCA 1575695 28 100.0 32 ............................ TATAACCCTCAACGCCGAAGCCCGGCGACGCA 1575755 28 100.0 32 ............................ TGTGGGCCATAGTGATTGCTATTGGCGCCGTT 1575815 28 100.0 32 ............................ TGACCAAGTAACTGGTAACTCGGTTACCGATT 1575875 28 100.0 32 ............................ TTCGCGCGGGACTTCGGTAATCCCGCTGTGGG 1575935 28 100.0 32 ............................ AGTAGCCAAGTTCCTTCGCGCGGGACTTCGGT 1575995 28 100.0 32 ............................ GTAATGGCGTATTCAGGGCCGGCAGTATAAAC 1576055 28 100.0 32 ............................ TAGTTAAAGCTGGTGTTCCACATGAATTTGCA 1576115 28 100.0 32 ............................ GCAATAATGGTGCGGCAAAGCTTTCTCAACGC 1576175 28 100.0 32 ............................ AATACTGCGCCGTGCGAATGCTAATAGCCCCC 1576235 28 100.0 32 ............................ AAATGCTGTTGTCATCGGACAACAATACGGAT 1576295 28 100.0 32 ............................ ATAATTGGCGCCAAAGGTTTGATATTCATTGT 1576355 28 100.0 32 ............................ TAACGCACCAGTGAACGTATAACGGCGAAGAT 1576415 28 100.0 32 ............................ TCACTAACAGACTATATCGCAGGTATTGTCTA 1576475 28 96.4 32 .......A.................... GCCTTGTTCGGCGGCATACTTGCGAAACTCAT 1576535 28 100.0 32 ............................ TTGTCGCTGCGCTTCGCTTGCTCAGGCTTCGC 1576595 28 100.0 32 ............................ CTCAGCGCTATTAGTGCGCACCGTACTGCGGA 1576655 28 100.0 32 ............................ TAAGCAATGTTGGTAGCGTTGTTGCTAGCCGT 1576715 28 100.0 32 ............................ AACTGCATACCACGTAAAACTAATTCGATACG 1576775 28 100.0 32 ............................ AACAGGCGGCAACTCACCAGCATCTGCCATTG 1576835 28 100.0 32 ............................ GCTCTGCTGGTTTTGCAATGCATGATTTAATC 1576895 28 96.4 0 ........................T... | ========== ====== ====== ====== ============================ ================================== ================== 114 28 99.9 32 GTTCACTGCCTTACAGGCAGCTTAGAAA # Left flank : ATGTAACTTACGTAAGTTTTGTACGCAAGCAGGTGAAATCGCCCGAACGAATAGAGCGGGATATGCAGCAAAAAGCCGCACTATGGGCAGCAAAATCCGGCAAACCGCTGGTGGAATGTTTAGTGGATTTGCAACAAAGCAAGCCGAAGGCGTTGTGCACCTTGCCGTTTATTTATTTGCATAGCCAGCAAACGAAGCCGCGTTCCCCAGATAAAAGCAGCAAGTTCCCGCTGTTTATTCAGATGCAGCAACAAAGCACATCACAAAATGGGGGCTTCGATTGCTATGGCTTGAGTAGCAAAGCGAATGGACAGTCAGTATTGGCTACCGTACCGCACTTTTAAATTGAACGAAAAAGGTAAGCTTTAACCCTTTATTTTTTGCTCTTTAAAAATATAGCTTAAATACAACAAGTTACAATGGGTGGTTTTTAATAAGGTAAAAAAGTGATTTTTATCCTAACTGCCTGTTGTAACTTATTTTTATTGATTTAGTCTATT # Right flank : ACTGTCTCTCATACACAAATCCCTGAACAATGCTCAGGGATTTTTTTTGAACTCATTCCCCGCATTGTGAGCAGATCGTCTAGGGCTAAATATTCGAGGCGATTATGATGAAGATGATGGATCCAGAGCAGTGGGCGCAATGTCAATTTGGGCACGCAAACCTCAACGACCCAAGACGTACACAAAGACTTGTTTCACTGGCTACCTCTATTACCCAACAACCCGGAGTTGCCGTGTCCAGACTTCCCTTATCCCCCGCTGAGATGGAAGGGGCCTACCGATTTATCCGCAATGAGAATATTCAAGCCAGTGATATTGCTGAAGCGGGTTTTCAAGCCACCGCGCAGCAAGCTCGAGAGCATGACATCTTGTTAGCACTAGAGGATACCACCTCGCTGACTTACAAGCATGACAGTGTCAGGGAGGAGTTAGGTCATACCAATCAAGGGGATAAAAACCGTGCCATTCTGGCGCATTCTATCTTGCTGTTTTCACCGCAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCTTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCTTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.60,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2473575-2470876 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031775.2 Shewanella decolorationis strain Ni1-3 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 2473574 37 100.0 33 ..................................... GGAGCAGGACAGTAGTAGGTTCTGGAGAAAAAG 2473504 37 100.0 33 ..................................... AGCACAGAGCTAACGTTTAGACCATTGGCTTGG 2473434 37 100.0 33 ..................................... ACTTTATGGTCGTAGCAGAACTGCTCGAAACGC 2473364 37 100.0 33 ..................................... TACGAACACTATGTGGAGCCACGAAACTAACAG 2473294 37 100.0 32 ..................................... TCTTAATCCTGCTATTAAGCGGGGTTGTCTTT 2473225 37 100.0 34 ..................................... TTATGGGTAAAAAGAGGGGAAGTAAGGAATATCC 2473154 37 100.0 33 ..................................... TAACCCCAAAGAAACTAGCCATCAAAGTGATAG 2473084 37 100.0 33 ..................................... CTCCATCTGCACCAGGGCTTAATAAAGCCGAGG 2473014 37 100.0 35 ..................................... TTCTTCTACATAAGAAGCTACAACAACACCAGTAG 2472942 37 100.0 34 ..................................... TCAAACATGACGCCCTGCTCCTCAAGGGCTCGAG 2472871 37 100.0 33 ..................................... GTAGATAAATCTTCAAGACGTTTCTTAATGAGA 2472801 37 100.0 34 ..................................... AGTTGGACATATTTCTCAGGGGTCTGGGTTTCAT 2472730 37 100.0 31 ..................................... GGTGAAATCAGCCCTAACCGTTCGGGTTTAA 2472662 37 100.0 33 ..................................... GATGCCAAAGGTCTTAGTCGGCCCCCTTTAACC 2472592 37 100.0 34 ..................................... TTAGGCTGCCTTGATGTAGACAGTGCGCATCATG 2472521 37 100.0 32 ..................................... TTAGCAAAGTAAGATGAAACGTGTCCGACTTC 2472452 37 100.0 36 ..................................... AGAAATCCATATAGATGAACGCGATACTGCCTTAGC 2472379 37 100.0 33 ..................................... GGGCCGACCACACGCAGCACACCATGGCGTTAC 2472309 37 100.0 33 ..................................... CCAACCAATCCCGTTGGCTACGGAGTGCTTGCG 2472239 37 100.0 31 ..................................... ATTACGGAGATTTAACGATGACAACTTTTTT 2472171 37 100.0 31 ..................................... GCGAATAAATCATCAAAACAGCACCTGCGCA 2472103 37 100.0 33 ..................................... ATACCGCGGTGGATCAAGTAATCGATGGTAAGT 2472033 37 100.0 35 ..................................... CCAATCCCTGAGCTACGGGGATTACCTGTGGAGCT 2471961 37 100.0 31 ..................................... GAGAATCAGTAAACACCACAATAGCATTTAT 2471893 37 100.0 31 ..................................... CTTGAAAGGTAGACGCCGTTACCAATGACTT 2471825 37 100.0 34 ..................................... CACACATATGCTAATAACGCTTGTATGAGCCTCT 2471754 37 100.0 34 ..................................... TACGACAACAACAGGTATCCGAACTCAGCTTCGA 2471683 37 100.0 33 ..................................... TGATTTACGTTGAGCGATTGCTAAAGATACTTC 2471613 37 100.0 35 ..................................... CCATTCCTACTACGGGGTGTTTAGTTGCATAGAAC 2471541 37 100.0 33 ..................................... AAGTAGCCATGAGGCTGAGACTACTACTCCTAC 2471471 37 100.0 34 ..................................... ATAAGCACAGTTACCTATACGTTTGTGGAAATAG 2471400 37 100.0 32 ..................................... GGTGGTTTGTTTGCTTTTGGGAAGAACTCTAC 2471331 37 100.0 33 ..................................... ACTTTACATTTGCAGCATATGCTGATGCTGTGG 2471261 37 100.0 33 ..................................... AGACGAACGTTAACGATAGGAGCGATAGTGTCA 2471191 37 100.0 34 ..................................... GATTAGCTATTAACCTTTCTTGCTTTGGATTCTT 2471120 37 100.0 32 ..................................... AGTTCGAGTAGCCATGATGCTGAAACTACTAC 2471051 37 100.0 32 ..................................... AATTTGAAGTTCGGCTCGTAGTCGGCATCAGC 2470982 37 100.0 33 ..................................... AGTCATCAATAGTCATACTGTTGGCACCTTAGC 2470912 37 91.9 0 .........................A....C.T.... | ========== ====== ====== ====== ===================================== ==================================== ================== 39 37 99.8 33 CTCTGAAAGACGCCCCGCCATTTAAGGGGATTAAGAC # Left flank : ACGGATTAACACAGGGGCAATACACCCTATCAGAGGCAAGCGCATATGAACTCAACTGAGCATTGGTATCTCATCTGTTACGACATCCGCAAACCGCAGCGTCTACAAAAACTGCAGCGTTATCTGCGCCGCTGCTGCCTAAAACTACAAGACTCGGTGTATTTATTTTGTGGGAATTATCGTCAAGGTGAACAATTACGCCAAGCAATTAGCCAGCGCATTAGCCGCAGTGTAGATGATGTCAGAGTTTACCAACTGCCTTCCCAAAGCCAATTTAAATTTTACGGCCAACTACCTTGGACTGTGGACATCTTTTATCCCGGATTGCCGTCATTTAGCCATACCCCAGCGACAGTTGCCTAACCACAGGGAAACCGTTAAAGTGAAACCTCTAGAGCCTAAACCCAATCTATTTTCCGAGCCACTTTTATGCTCAAAAAACAGTCAGTAAAATTTAAGCGTAACTATATTGATTTTAAAAAGGAAATTTTTTGGTTAGA # Right flank : TGCTGCTTGGCTCGCCCTAAACGGATGCACGATCTAAAAGCTAATAGAATTATCCACTAATACAGCCTTTATAGTGGCTTGAGCTCCCTATGCCACTTGCGATCACAAGTTTGTGAAACCACTGCAAAAGTCTTGATTGATTCATCATCTGACCACTTACTGAAAGAGGAAAGATGATGCTAGTGTTAAATCAATATGCTTTTGCCCCAAAGACTGGCAGCGATCTGACATCGTCACTGCGTTCGCGCGGGATTCAACGACTGCTGCACTTTACCTTGGTTGACAACTTAGCCAGCATCATCAAATATGGCCTCTTGGGGCGCACCGAATTGGAACAAAGACAACTGAACTACATTTATACCGACAATAAGCGATTAGACGGTAATCCTAATGCTATCTGCCTGAGCATCACCTCACCGAATTACAAAATGTTTTTCAGTAAGCGCAACTCATTTAGCCAATTGGGATATCAGGACAGTGACTGGGTCGTAATTTTGTTA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTGAAAGACGCCCCGCCATTTAAGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 3 2484261-2483313 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031775.2 Shewanella decolorationis strain Ni1-3 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================== ================== 2484260 37 97.3 33 ..........C.......................... AATTTTTAATACTACGCCGAGCAAAAATCCTAG 2484190 37 100.0 32 ..................................... ACCGTGATATGCAACGCCAAGCATTGCTAGCT 2484121 37 100.0 33 ..................................... CGAGCTAGGCCACGGAGGTGCTTGCGGAGCACC 2484051 37 100.0 34 ..................................... TCAGCATTGCATTGTCACTGGTCGCAGACAAGAC 2483980 37 100.0 34 ..................................... GGTGTTATAGGTGGCGGTGCACTGGGTTCTGCAT 2483909 37 100.0 33 ..................................... AAACCAGTGTGCCTGAACACGTTGGTCTTTCGC 2483839 37 100.0 32 ..................................... CGGCCAGTGCCGCCTTCTTGATGTAAATCTGA 2483770 37 100.0 34 ..................................... TGTATTTCGTGAGCCAACACGTCTAGCGGGTCGA 2483699 37 100.0 33 ..................................... CGCTGAGCTTGGTAGCTCTTTGTACCCAGAGAA 2483629 37 100.0 33 ..................................... ACAGCATCGTTCATGAAGATGTCTTTTGTTGTC 2483559 37 100.0 33 ..................................... CCTTAGCTTTGAAAATAACGTGCAAGGCGAGGT 2483489 37 100.0 32 ..................................... TAATATGCAAAGCTGGTAGTTCCATATTTGGG 2483420 37 100.0 34 ..................................... GAAGCAGCCCCGTAGGGCTACTTTGAATCCCACC 2483349 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================== ================== 14 37 99.8 33 CTCTGAAAGATGCCCCGCCATTTAAGGGGATTAAGAC # Left flank : TGAGTTTTCAGTCCATCACAAAATTAGCTTGTGCAACCTAATCTCGTTGCATATGGAGCACATGGGCGTTGAAGTGGTTCGCCGCTACTGCCAGAAGCTCCCAATTAACCGTCCAATGGAGGACTAACCATGTCTAAGCAACTGTCACAAAAAATGCTCTGGTCAAAAAGCACCAAGGGCACTCACGTTTATAATGCCTTGGCCAGTGATAAAGCCCCTGCAGTGACCACGGTTTATGTCAATAAACAGGCCCTAGGTGATAAGGCCCCCGACATGATCACCCTGTCGATTGATGTAGAAGCCGGAGAGGTGGACCATGGTTAAAATACACCTCTATGGGATGCGGCTCACACCCACGCAGCACGAATTGGTTGAGAAGTTTTTGGAACCTCACACTTATCTTGAGTCGGTGTCAATCCATAAACTGTCTAATAACCAAATCCAGTTGTTCACCTATGAGTTTGAAGAAGGGCATTACCAAGACTTACGAAACTTTGAAA # Right flank : AAGATACCCCTCGTGGTCATGGCAAAGTCCAGAACGGTGGTTCACACCCTTATGGCAGAGAAAGAGGCGGCCTATCAACGCAAGAAAGCGGCGAGAAACCCAAGCCTTAGTAAACCCCCAATCGGAGGGGACTTCGACTTTATTGATTAGGGAGCCAACATGGTTAACGACCAAGCACCTCGATCCCCTCCTAACACAATGTCAGGAAGGAGAGCGCATGTCACTAGACGTAGCAAGTCAAATCATGGAGTACAAATCTGGTTTGGCCGAGATAAAGGAGGCCCTTAACAAGAAGCCAGTTAGTTGGTGGGCAATATACCCCAAGATGGTCCGAGTTCAAGAACTGGCGATCAATGCTGGGATGCCCCCCCCGTTCAGTAAACAGCAACTAAAGGATGCGAAGGAGAAATTATTTCAGCAGCGTACAAACCCGCCGAGTCTCACGTTTTAGAACTTGCAAGGGCCGGATCACTCACCGACAGCGCAATCAATATGATTAC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTGAAAGATGCCCCGCCATTTAAGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 4 2485612-2484874 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031775.2 Shewanella decolorationis strain Ni1-3 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 2485611 37 100.0 32 ..................................... TTACCCTCGTACTGTGGGCGCCCTAGGGCAAC 2485542 37 100.0 35 ..................................... TTTTCTGGCGCGTAATTGCCACATCAATTTTATCG 2485470 37 100.0 32 ..................................... GGTGTTATTTGTTTGCGTTATATGCAGTTAAC 2485401 37 100.0 34 ..................................... TCCTCCATGGTAGTACTCCTTACTGGGTAAAGAC 2485330 37 100.0 34 ..................................... CATAGACGCACTAGAATGTGATACATCTAAATTA 2485259 37 100.0 33 ..................................... GTAACCTACACTACGTACTGCTGGGTCGAATTC 2485189 37 100.0 31 ..................................... GCAATAGGTTTGACTGACATGATGATGTCTC 2485121 37 100.0 33 ..................................... TTCCAATGTTGTGGCATTACTGCGTACTTCGAA 2485051 37 100.0 33 ..................................... AGTGAATATACGCACTACTGAATTACATGCTGC 2484981 37 100.0 34 ..................................... TTTACAAATACGCTACCAAATACGTCAGATTTAG 2484910 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =================================== ================== 11 37 100.0 33 CTCTGAAAGACGCCCCGCCATTTAAGGGGATTAAGAC # Left flank : ACAATTACTGGACAAACCCATTACACCCCACGATGCCGACAGCTACCACTATTGCCGTTTTGTGCAGCAATTGATGAAAGTCAAAATCGCTTTAGGTTCACCGCAGTTGACCCAGAGTTAAGGACTTAAGTCACCATCAGAGAGTATGCAAGACTCGGTGTATTTATTTGGTGGGATTATTGTCAAGGTGAACAATTACGCCAAGCAATCAGCCAGCGCATTAGCCGCAGTGTAAATGATGTCAGGGTGTACCAACTGCCTTCCCAAAGCCAGTGTGAATTTTACGGCCAACTACCTTGGAATGTAGACATCTTTTATCCCGGATTGCCGTCATTTAGCCATACCCCAGCAACAGTTGCCTAAACACAGGGAAACCGTTAAAGTAAGACTTTTAGAGGCTAAACCCAATCTATTTTCCGAGCCACTTTTATGCTCAAAAAACAGTCAATGAAATTGCTTTGTAACTATATTGATTTTAAAAAGGAAATTTTTTGGTTAGT # Right flank : ATCGAAGATGCCCCCACGGTGAACAAATTCTTTGAGTTGGCGAAGGTCAGCCCAAGAACCCTAGTCATCACCGGTGCAGAGGACGTTATTCTCGCGCCGGATACTCCACGGATTGAGTTTTCAGTCCATCACAAAATTAGCTTGTGCAACCTAATCTCGTTGCATATGGAGCACATGGGCGTTGAAGTGGTTCGCCGCTACTGCCAGAAGCTCCCAATTAACCGTCCAATGGAGGACTAACCATGTCTAAGCAACTGTCACAAAAAATGCTCTGGTCAAAAAGCACCAAGGGCACTCACGTTTATAATGCCTTGGCCAGTGATAAAGCCCCTGCAGTGACCACGGTTTATGTCAATAAACAGGCCCTAGGTGATAAGGCCCCCGACATGATCACCCTGTCGATTGATGTAGAAGCCGGAGAGGTGGACCATGGTTAAAATACACCTCTATGGGATGCGGCTCACACCCACGCAGCACGAATTGGTTGAGAAGTTTTTGGA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTGAAAGACGCCCCGCCATTTAAGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA //