Array 1 408517-404724 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHXEN010000003.1 Bifidobacterium pseudocatenulatum strain YIT12818 YIT12818_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 408516 36 100.0 35 .................................... TATCTGAGCTACGCCTACCATTTCTGCGAACAGCA 408445 36 100.0 36 .................................... CAGCCGGACGTGGAGGAGGTGGACGCTCTGCGCCGG 408373 36 100.0 36 .................................... TTGACCGTTTTTCCGAGGAGGGCACCAAGACCAAGC 408301 36 100.0 37 .................................... AGGCCGATAAGACGCTGGATAAGTACCCCCGTGAACT 408228 36 100.0 37 .................................... ACGCCGTCAGGCCGCGGTAGTCCGGCGCAAGTGACAT 408155 36 100.0 37 .................................... GTTCTAGAGAGGGCTGCGGAAAAACCGTCCGATATGG 408082 36 100.0 38 .................................... CAGATCACCCTCAACCCACTCGACCTCATCGAAGAAAG 408008 36 100.0 35 .................................... GTCTCCAACATCATGGCCCTTGGCACGCTGTTCCC 407937 36 100.0 36 .................................... GGATCCGGCTGGTATGCGGCGGCGCAGCGCAACGGC 407865 36 100.0 38 .................................... ACGGAAAAACAGTTGAACCCCAACTCGTATGACGTGAC 407791 36 100.0 36 .................................... GGGCTTGATGTCCTGCCATCCATGTGCGCACCAGAC 407719 36 100.0 38 .................................... ATTATCGGACAATGGATACACGCTTGCGCAAATCGAAA 407645 36 100.0 39 .................................... ATGCCGCGCCTGCTCGCGCTGCCCGACGCGGCGGAATGG 407570 36 100.0 38 .................................... TTCTTTTGATTACAGTGGATTAACCGCAAAAGAAAAAG 407496 36 100.0 36 .................................... CGGCGGGTGAACGCGGCCGCGAGGTACATGGCGCTG 407424 36 100.0 38 .................................... GACGGTTGACGTGCGCAAATGGCTCAACGCGTTGGGCG 407350 36 100.0 36 .................................... TTCGCGAAATAGGGATTGGCTTTCTGTACGGCGTTA 407278 36 100.0 34 .................................... ATGCTATTGCAGTCAACGTCGATGGCCTTACCGT 407208 36 100.0 35 .................................... TGGAACGGCCCCAACTCCGGCACCAGCAACTCCAG 407137 36 100.0 35 .................................... GTTCAGGAAGCGGTGACCTTCGGTGATGTTGGCGA 407066 36 100.0 36 .................................... TAGCCCCCTCGCGCCACAATTCGCACAGCATATTGA 406994 36 100.0 38 .................................... GCCATCAAAGACAGTATGGCGGACTACACGTTGACCTT 406920 36 100.0 34 .................................... CTCAAAGCAAGGCAGCAGGCGTGCGATACGATTA 406850 36 100.0 37 .................................... TCGGCATGAACCGATATCAAGGGTGGAGGGATGACGG 406777 36 100.0 35 .................................... AGGATCACCGTGACGATCAGCAACAACTCCACCTG 406706 36 100.0 36 .................................... ATGGCGCAGAAATACGGATGCCTCGACCAAGAGACA 406634 36 100.0 35 .................................... GGTCAATCAGCGCCTGCACATCGATGACCCCATCA 406563 36 100.0 34 .................................... GCGTAGATCCTTGCGGCCACGGCCTCGTACTGTT 406493 36 100.0 36 .................................... AGTCTTGACGGCGAGCTGGACGAAGAGGCCGATGAA 406421 36 100.0 35 .................................... ATTCCAGCGCGCAGGAGGCGCCTCGGCTCATTACG 406350 36 100.0 38 .................................... CGGCACGGAAGACAGGACGGGGCACGTCAGGCGATCGG 406276 36 100.0 37 .................................... GGGGCGTTTTCGGTGGTGTCAAGTCAGTCGCGTCCGA 406203 36 100.0 37 .................................... CGTCCACGCGACATGTAGGATGGCCATTCGTTATCCC 406130 36 100.0 36 .................................... GAAACAGGCGACCTAGCAGACCTACGCGACGGTTAT 406058 36 100.0 35 .................................... CACCCTTGACCGCGCAGACGGCACACCACGCAATC 405987 36 97.2 37 ........................A........... TCCATGCTCATACCGGTGGCCGGCAGCGTGTCGCGGG 405914 36 100.0 35 .................................... ATGGTCTCTGGCATGAGACGCGGCCTGTCGACCTT 405843 36 100.0 36 .................................... GCTAAGACTGGCGAGGAAGTCGTGGAAGACTGCAAG 405771 36 100.0 37 .................................... CCGACCAGCCGGGAAGCCGTCCAGCAGACGAATACTG 405698 36 100.0 36 .................................... CAGCCGCAGCTGGCCGCAGCCGTCAAGGGCGCGACC 405626 36 97.2 37 ...................................G CTTGGAGACGATGTCTACGGACGTTACTCGCTGCCAA 405553 36 100.0 35 .................................... ACGTCATCGTCGTGGATTATTCGTTTTTTGAGCCA 405482 36 94.4 37 .GC................................. GCTAACGAGAAGGTGCAGGAACTGGCCCGCAGCGGAC 405409 36 100.0 37 .................................... CGTGTGTATCGGTGAGTGTTAGTCACCGTCCCGTTAT 405336 36 100.0 35 .................................... TCCTCGAGCGCGTTCGCCGTCGCCTCCTCCGTATA 405265 36 100.0 35 .................................... GTGAACGTGCCTGACAGTACGACGGCCGTGGAATT 405194 36 100.0 38 .................................... CTAAGGCCGTTGTGGAGCTTCTCGGTGCGGCACCACAG 405120 36 100.0 35 .................................... AACAAGAAATCAGGCGGAATGGAAGCCACGTTCAT 405049 36 100.0 37 .................................... TAATTCTTTCTGCCACCGCCCCGTCAGAAAACTTGGA 404976 36 97.2 36 ........................A........... CTGCCCGTGCCTGTTTGGGTCAACGCGTATGCGCGA 404904 36 100.0 36 .................................... GAGCTCGTCTTCCGGCGTCAGTGCTTGTTCGTTGCG 404832 36 100.0 37 .................................... GGGGACAATGACCCCGCTGATTTGAGGGACGGGTATA 404759 36 94.4 0 ..................................AG | ========== ====== ====== ====== ==================================== ======================================= ================== 53 36 99.6 36 ATTCCTGAGCTAATCAGCTCAGGACTTCATTGAGGA # Left flank : GATGATAGACGTCGTGATCACGTGGCAAAAATATTACGGTGCTATGGCGAGAGGTTGCAGTATAGCGTGTTCTTTCTGCGGATTCGGCCTGCAAAAATGCTGGTTGTCCAGAATCTAATAGAAGTTGAAATCGATGGTTCAACGGATTCAGTTGTTGTCTGTTTTCTCGGAAAAGAAGAGCAGGCAAGAGAGGGAATGTCATTCTTGGGACGACGGGAATACAGTGATTTAACCATTCCGACGGTTATCTGATTTCACTTTAACCTCTCTGATTGTCTTTCACCTATGTGATTGTGGCTTGATAATTCAAAAGGTTTTTTATGAATTTTGGAATACGAGAGGTGAATCATTGCTGCGACACGCGATGACCTCTCGCATGAGGAAATATAAGGGTTTATGTCTCTTTTTCTGGTGATAAACTGACTGGAGGGAGAGGTATCTGTTCCGCTCTCGCAAAGTTTTTAATTCGCTTAGTCATTAGAGCGGATTAGAATGAGACC # Right flank : TCTATTGGCTCTGATTGTCGTTGTGCGCCCTGGCTTGTGAAGCCGCTTTCTGAATTAGGAATAGCTGCTATCAGGGAGGGCAAGAGAACTATGTCAAATTTGACGTAGATTGTGGCATTTTCTGTGGCCAAGTTCATCCTTGATGAAAGGATTTCTACTTGTAATGTAGTATTGGTGCGTATGATGCTGAGAATTGACGAGCGCGATTTGAGGTCGAAGCTCAATGAGCACAGGAGCCTTATTGGATATGGTTCCAAGGGCGACGGCATCGCCAACATTGTTGCGGGCCTATTCTATATTCCAACAGCATGGACGTTTGCGGAATTGCCGATGCGGGCGCGATGCTTATTTGCTGTGCTGGGTGTTGTGATAATCGCGTTGGGTGTCGCGAGTATTGTATGCAAGGGACTCACTTCCGAAAAACTATATAAGGAAATCGAATCGATGAACAGAAGAGCTAGCTCTCTCATTGCGGTCAAGGATGGCATGGACGCGCTGTC # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCCTGAGCTAATCAGCTCAGGACTTCATTGAGGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.00,-7.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //