Array 1 103303-102360 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFWR010000022.1 Micromonospora sp. MMS20-R2-23 contig22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 103302 29 100.0 32 ............................. GCCAAGGACCGCAACGCCGACGCGTTTATCAA 103241 29 100.0 32 ............................. AAGCGGAACCCGGCCTACGGCCTGGCGGAGGC 103180 29 100.0 32 ............................. AGGCGCTCGTACTCGACGTCGATCGGGTCCTT 103119 29 100.0 32 ............................. AGCTCTCGCCAATTGCTCATCGCTCATCAGCA 103058 29 100.0 32 ............................. GTTCCGCCGTCGCGGCCGGTGCCGTCGCAAGC 102997 29 96.6 32 ............................G CATTCCGATTTTCTCGGGCGGCGCGACCCTGG 102936 29 100.0 32 ............................. AGGTGATTCGCCGACGAGTAGGCCAGTCGCGG 102875 29 96.6 32 ............................G TCGTACAGGGTGCTGTCGCCCCCGCGCTTCGC 102814 29 100.0 32 ............................. GTTTGGCGCAGTCCCTCTGCCTTAAATCCGTC 102753 29 100.0 32 ............................. GCGTCGGCCAGCCAGGCGTGCACCGCGGTGCC 102692 29 96.6 32 ................T............ GACGCCGGGGTGAGCCCGGCCTGACCGCTGGC 102631 29 100.0 32 ............................. GCGGTCATCGGCTTCCTCATCGCGCTGCTGTG 102570 29 100.0 32 ............................. TCGACGGCGTCGTCGCCGGCGAAGTTGTGCGC 102509 29 96.6 32 ................T............ ATGGTCGACTCCTACATCCGGCCGGCGACCGG 102448 28 93.1 32 .............-..............G TACGCCAAGAAGCCCTGGATGTCGGCGTTCAA 102388 29 86.2 0 ...............T........G..GG | ========== ====== ====== ====== ============================= ================================ ================== 16 29 97.9 32 CTGCTCCCCGCGCATGCGGGGGTGATCCC # Left flank : TCGCCGCCGCGAACGAGAGCGGCATCAGCAGAAGCTCATGGCGGGTGGCCGACCCAGGAGTCGCGAACTGGCTGCGGTGGTGCGTCACCAACGGCTTCCAACTCAGCGAGGTCGAACAGCTCATCCTCGACACCGCCGACGGGCGCGCAAAGCAGCACGCTGACGTCACGGCCGCCGTATCGCAGTCCGCGCCGCATCCGGGCACGTCCAAGACGGACACCGTCGAACGCAGCGCGGCGGGCGATGACTCGCCTGGGGTCGATGCGGATGGGTTTGTCGGTTCGGCTCCCGTCGTCTGATCCTGTCAGGCGGGGGTCAGCCAGGCTTCGGCCCGGCTGGCCCTCGCCGCACCAACTCCATCAACGGGTCCGAGTTGACTACCATGCTGTACGTCAGCGGGGACCTCAACCAGCGGAGCCAGGACCGACCACGTGAACGGGCCGCCAACCAAAGTGAATAAAAACAGCGTAGTTGATCTTTAGTGCCGCAGGTCAAGAAGT # Right flank : CTGGCGGATGGCGATCCCGTGCGCCTACCGGCGGTGGCGCGCACCTGGCTGTCCGTACGAGTGGAGTTGGTCTTGGGCGTGGCGTCGACCTGTGGCCTCGACCCGGCAGGGTTTTCGCGTTGAGCCGATCACACCCCTTCACTCAGTTCGCCGAGGCGATCGACTTGGCGTCCGCCCCGCTGGGAGGCCGATTTCCGCATCGACCCGCTGGAGAAGTTCGGCGGCCTGCCTGCCGAACCAATGCCGCACTTCAGCTGGGAGACTTCCACGATCAGTGCGGACGACGTCGGGACACCGACGACGGCGAATCGTCACCGCCGCAACCGCCGTCCCGACCACTTACGGACCTACCGCCGCTCCTGCCGTGGTGGGGGCCGCAAGAACGCAGCCGGTAGCGACACCAGCCTGCTCTTGGTCGCCCGCCCGGCACCGAACGCGTGCGCCGGCACGGGCTTGCGCTCCGGGCATCGCACGTAACCCGGAAAAACACTCCTGTCCTC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCATGCGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCATGCGGGGGTGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 340673-339307 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFWR010000004.1 Micromonospora sp. MMS20-R2-23 contig4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 340672 30 100.0 33 .............................. GGGGTCATGACGCGCTCCAGCTTGAGCCGTCCA 340609 30 100.0 37 .............................. TCGTCGACACCAGCGAGCAGCGCATGCACGGGCTCAA 340542 30 100.0 38 .............................. AAGACCATGCTGGGTGTCGAGCAGAAGAACTGGTTCAA 340474 30 100.0 38 .............................. ATGACGGTGTGGCCGTTGTCGGTGGCGTACTGGTCGAG 340406 30 100.0 35 .............................. ATGACGTGACGGTCCCGGTCGGCGTCGGCGGTGCG 340341 30 100.0 40 .............................. GCGGTGAACCCGCTGCCGATGGACTGGCTCGGGCCTCGGG 340271 30 100.0 35 .............................. GCCGCCTCCCGTGCCTGACGGGTCAGGCGCTCCCG 340206 30 100.0 32 .............................. ACCATAGCGCGGAGGATCTCGATTTCGGCCGG 340144 30 100.0 39 .............................. TAGCCTCGGGCCGGCGCGGCGCAGGTGTTGGTCGAGCCG 340075 30 100.0 43 .............................. CTGAACCACTGCGCCAGCATCAGTTCCGCGTAGCGGCCTCGGG 340002 30 100.0 38 .............................. GCCACCCGCCGCACGTCCCCGCCGCTCACCGGTTGCCG 339934 30 100.0 38 .............................. ACCGCCTCGGACCGGCCGAGCTGGATGCACAGGGTCAG 339866 30 100.0 32 .............................. GACAACGCGGTGACGCTGCGGACGTCGATCAG 339804 30 100.0 37 .............................. GGCGACGAGCTGATGGCCCGGCGGGCGGAGCGTCAGG 339737 30 100.0 36 .............................. GGACATAGTCGGCCGTACCCCGCTGCGCGGTCAGCA 339671 30 96.7 38 ......T....................... GCGAGGATCTCGTCCGCGCCGGCCTCCGGCACCTCCCG 339603 30 100.0 36 .............................. CGCCGCGCGTAGCCCCTCGCGGTCCGCCGGGTGTAC 339537 30 100.0 38 .............................. TGGCCGCCTGGTCGAGCGGGTAGTAGACCGTCCGGCCG 339469 29 93.3 38 ..............T.-............. CCGCCGGCCTGCCGGGCGGCGGTGAATCCGTCCATCCA 339402 30 100.0 36 .............................. CGGATCTGCTGCACCATGCTCATCGGGTACGAGCTG 339336 30 76.7 0 .............GA..A...CG..C.C.. | ========== ====== ====== ====== ============================== =========================================== ================== 21 30 98.4 37 GTCGCTCATCACCCCTGGAGGGATCGCAAC # Left flank : CGAGAAGAACTGGCGACCACCGTCCATCACCGGCAACTCAAGCGGAAAGCCTCATACGAGGAGTTGATTCACCTTGAGGCGCTCAAGCTCGTACGGCTGTGTCTCGAAGGAACGACCTATAAGCCCTTCCGGCCCTGGTGGTGACCAATGTTCGTCGTCTTGGTCTACGACACCGCTGTAGAACGCAACCCCGCCGCCCTACGGACCTGCCGGCAGTACCTTCACTGGGTGCAACGCAGCGTCTTCGAGGGCGAACTGTCCGCCGCACAGCACCGAAGCCTCATCACCACCCTCCGACAGCAACTCGACCTGACCTACGACAGCGTCCGGATGTACCGCATCGGCTCACCGCATCTCGTCGAGGTCGAGACCCTCGGCACCGAACTGGGCCACCCAGATTCGGTACTCTGACCAGCACAAATGCACAACCGCCGGACCGCTGCAAAACCCTGCCAGATCCAGGCCCGAAAAGCAGCTCTGACCTGCGACTTAAGATTCGG # Right flank : ACGGTCGGCATTCCGGACGAAATCGTGGTGCTGCGGTCGGGGTCGCAAGTACGTGGTTGGGCCAGGTGGGCGTGGCGGTGGCATCGGATGCGCGTGTCTTCGTATCGATCTCAACCGTAGGCGATGAGTATGGCCTGGTTGTGCACGAATGAGGCGGCGGTCGGGTCGTTGTCGCGGTCTGCTGGGGCTGCGGGGTCGGCGCGTTCGCCGACCCCGCAGCCCAGCAGACCGGCACAGGCACGCCGCGCCTGGGCAACGAGGGGGAAGCGGCGTGCTGTTGTCCCGGCGGAGCCGAGTTACCTCCCAGATGATGGTGGCTGGGTGGTGCGGCCCGTCGATCATGAAGCAGCCTTTGCCGGAGCGTTCACCACATTGGTTGGGGAGTCTCCCTGCAGGTGTTACAGGTGTGGTCGCCCCTGTCCCATCGTGACGCTTCCAGACGCGCAGCGTTGAAAACCGATGCCCACGCCAGCGTCTGCAGACTCGCTCCCCGATAAGCT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCATCACCCCTGGAGGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [20-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 350185-351271 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFWR010000004.1 Micromonospora sp. MMS20-R2-23 contig4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 350185 30 100.0 37 .............................. GTGCGGATCTGGATCCGGACGGCGGTGGTGGTGACGA 350252 30 100.0 37 .............................. TGTGTCTGATGAGACGCTAACCGCCACCATCCCCGTG 350319 30 100.0 38 .............................. AGCCTGTTCGTCCGCGCGTGGACGGTGGCGAAGAACAA 350387 30 100.0 39 .............................. AGCTACCGACCGCCCGCGCAACGCGACAGCGCCGAACCG 350456 30 100.0 35 .............................. CTGTTCGCCGGGAAGGGCAAGGGCGGCACGCCGCT 350521 30 100.0 35 .............................. ACGACCGGCGAACCGATGTCGTCGTACCGGCCGGG 350586 30 100.0 33 .............................. GTGGGTGACAGTGCCCCGGCGTGCCTGCCGGTT 350649 30 100.0 33 .............................. CCGGCCTGGCCTGGCTGTGCGCCACGTACTCGG 350712 29 96.7 35 ..............-............... GCTTTCAGGCTGCGGATCTGCCACAGCCCGACCGA 350776 30 100.0 37 .............................. ATGTGGGTGAGGGCGATGCAGCCGGAGACGCCGTCGA 350843 30 100.0 36 .............................. CCGACATCTACCTGTTCGGCGCCCAGCTGGTGGCGT 350909 30 100.0 37 .............................. ACTGGTAGGACAGCTGGGCCTGCGACCGCTGCGTCGG 350976 30 100.0 36 .............................. ACGCAGCATGCAACTGCCACTGGTACCGACAGGCAA 351042 30 100.0 38 .............................. GCGACCTGGTAGACGGTCAGGCCCATCGCGCGCCACAT 351110 30 96.7 35 .........T.................... ACGGCCCGAACCCGACGATGCCCTCACGCAGGCGG 351175 30 96.7 37 .............T................ ACGTGGTAGGCCACCCACCCGATCTCGTCGAGACGAT 351242 30 93.3 0 ...........T.............A.... | ========== ====== ====== ====== ============================== ======================================= ================== 17 30 99.0 36 GTCGCTCATCACCCCTGGAGGGATCGCAAC # Left flank : ACCGGAGAAGCAGCTCCCCTCCTCAACTCCCACGGCAGCTCAAAGCCTGCCCGGGCTGACCGGTTTGCTTCCCACCGCAAAGAACTCAGCTCGGCCCTGGCTCAGCCCGAATGGTGCCAGCGCCGCCCATCGAGATGCTCACCAAAGGGCATGGCGCGCCGATCGCCCCGGTGGTCCGGTGACGAACAGGGAGATGATAGGAGGACATTCGGCCTCCGGATCGGAGCTTAGGATGGCACGAGCAACTACATGAGCCAGGTCGGCGCGTTGAGCGCGACGACATCAAGATTCTTCGCGCGCATGGGGAGGTTGGGAGTTGGATTGATGCGACCCGGCCACGGCAGTGTGTGGCGCGTTTCCGCGACCAAGCCGTGCCCTGTTCTTGGTCGTTCCCGTGATTGAGTGTTCTGACCAGCGCAGATGCACAACCGCCGGTCCGCTGCAAAAACCTGCCGAGTCCAGGGTTGGAAAGCGGCTTTGACCTGCGACTTAAGACTCGG # Right flank : CATCTCGGACGCGTACGCGTTGCGGGAATGAAAGCTGGTCAGCTACGTCGAGGCGATCCGCACCTATCTCGGCACGGCCGACTGATGGCCTGCGCGCTGCGGATCAGCCGCGACATCTGGGACACGATACGGCGGCATCTGCGCGACAGCGACGACGAACGCGGCGCCTACCTGCTGGCCCGCGCCGGCCGGTGGACCGACCCGTAGGGCACCGGGGCGGTCACCGACCTGTTGGTCACCCGGGCCATCCCGATCCCGGACGACGCGCTGTCGGTGCAGAACAGTGTACGGGTCGAGGGTTGCCGCCTGGCTGACCCGGGAGGTGCTGATCGCCTGCTTCGAGACCGGCCTGTCCCTCGGTCGACGTGCACAGCCACCCGTTCGCCGACGACACGGTCAACTTCTCCGGCCTGGACGTGGAGAACATGCGCCAGACCCACACCGAGTTCCTCGACCGGATGCCGGCCGTACCACCGGTCGGGGTGGCGTCGCTGCTGCTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCATCACCCCTGGAGGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 3 374684-374910 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFWR010000004.1 Micromonospora sp. MMS20-R2-23 contig4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== =============================================== ================== 374684 24 100.0 41 ........................ GTCACGGCGGGTGCCTCCTCAGGCGGGGATGTCGGCGTCGC 374749 24 100.0 43 ........................ CACTATCTGGGCGATCAGACAACCCGCCGTTGTGGGGGTCGCT 374816 24 100.0 47 ........................ TACTGGTACCCCCGGCCGATGATGGCGGCCACGTCCTGCATGTCGCT 374887 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== =============================================== ================== 4 24 100.0 44 CATCACCCCTGGAGGGATCGCAAC # Left flank : GCGGCTGTCGCGGGTTGGGTACACAGACATCACCCAATGGACTCTCGCGGACGTACCCATCGATGCCCGGCCTGTGGTGATTCGCGTGCGCACTCAGTTCAACCCGATGGTGCTGGTTGGCTACGGGTTAGGATGGGCCGCTCCTCCTCATGGTGGTTCAGCGACGAACAGGGAGACGATCGGAACACATGTCGGTCTTCGGCTGGCAGTTCCAGGAGGATGCGAGCAACTACATGTGCTACGTGAGTGCGTTGAGTGCAACCGGAGCCAAGATCGTTCGAGTGCACGGCGGTGTCGACAGTGACCGGGAGTTGGATCGATGCGATCGGGTCCAGGACAGTGTGTGGCGCGTTGCCTCGACCAAGCCGTGCCCTACCCTTGGTCGTTCCCGCGACTGAGTGTTTGACCAGCGCAAATACACAACCGCCGGTCCGCTGCAAAAACCTGCCGAGTCCACGGGTGGAAAGGGGCTTTGACCTGCGACTTAAGACTCGGGTCGC # Right flank : CGCGGTAGGCCGCCCGTAGCCGAGGGCCTCCTGGGCCTGCCCCGTTTTGACGGACATCCGAGATCAGGGGACCTGGGGTCTCCGGGAGGATGTCCATCATCATGGAGAGCATGGGGAAGAAGCGGCCGCGGCCTCGTCGTTCGTTCACGCCGGAGTTCAAGGCCGAAATCGTCGAGTTGTGCCAGCGTGGTGACCGCACGCTTCGACAGGTCAGCCAGGATTTCGACCTGACCGAGACCGCGGTGCGTGACTGGGTCAAGCAGGCCGACCTCGATGCCGGTGCCCGCACCGACGGGCTGACAAGCAACGAACGAGACGAACTCGCGCAGCTGAGGCGGGAGAACCGCAGGCTGCGCGAAGACGTGGACATTCTCAAGCGGGCGACGGCTTTCTTCGCGAAGGAGACCCGGTGAACGTGTACCCGTTCATCGAGGCGGAGCAAGCCGGCAAGCACAACGTCAAGCGTGCGTGTGAGCTGCTCGAGGTCTCCAGGTCCGCCT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CATCACCCCTGGAGGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.50,-3.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [40.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 18965-18573 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFWR010000024.1 Micromonospora sp. MMS20-R2-23 contig24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 18964 28 96.4 33 ........................G... CCTCCTGTGTCAGGGCCGTTCACCCCGTGTCCC 18903 28 100.0 33 ............................ GCACATCGCCTGATCGATGCGGAGGTAGCCCGC 18842 27 89.3 32 ......................-.TC.. GTGGCTTCGTTCGTGGCGGCCTGACCCAGGTT 18783 28 100.0 33 ............................ GATGCCGACCAGCACCACCACTTTCCAGTCGAG 18722 27 92.9 33 ........-.....G............. GTCCTTAATCCGGTCGATCCACTCGCGGATCTT 18662 28 96.4 33 ..............T............. CGGGCGGCTCCCCTCCCCGCTGGCCGCGTCGGC 18601 28 96.4 0 ..............T............. | T [18575] ========== ====== ====== ====== ============================ ================================= ================== 7 28 95.9 33 CTGCTCCCCGCGCACGCGGGGGTGATCC # Left flank : GGTGAAGGTCTGCCCGCAGCCCCCGTACGGCACGATCGTCTCGATCTGCTCATCGAAACGACGTCCCGCACCCTCGGCGTCGGCCAACTCGAAGGCATGGCCGTGGTAGTCGCGCAACAGCACCGTCAACAGGTGATCCTCTCTCCGGTACCGGTACAGACACCGTGCCACCATGTGGTTCCGCCGTCGCGGGTGACCACACACCTCAGCCGGCTACCCTGCGGCAGGACAGTGGGAAGCATCTCGCCGCAGGCCCAGAGGAAGGCCCGGTCCCGATCATCGCTGCCACAGACCATGATGTCGACGGCCAGACCGCTTGGACAGTGCCGGTGCGACCGACCCGCATGAGGCCGACGCCGCCGGACCGGCATTGACTACCATCCCCTGTACGGCAACCGCCGGCCACAACCAGCAGCAACCAGACCGACCCCAAGAACAGGCCGCCAACCAAAGTGAACAAAAACAGCAAAGTTGATCTATAGCGTCCCAGGTCAAGAAGT # Right flank : CCGCTTGGCGTCATGCACACTGATCATCCCGCAGCCCTTGACTCTGATCTTCTTCTCTAGACAGGAACAATGATCAACCAAGGGCTGCGGCCATAATCAGCCATGGTCGATACCAACCGACCACAGGCTGAGGATCAAGTTAAGTCAACGGATCAAAATTGCAGCAATTCCAAGAGTTGGCGCAGACACCACGAAGGCGTAGAGGCCTCTCCGAAAGAAGGTGAACTTCTTCATTGCGATAAGAGACAACGCCCGCGCCTGAATCCAGGCTTCCTCTCGCTGCTTATCGGCATCGAGAGCTGGAACGAACCCTGGAGGCTGGGTCGCGAGCGACGGGTATGCATAGCGACTAAAACCAACGGGCGCTGCCGTGCGAGGGGTAAGAGCTGCCACCAAAAAGACCGCACCCACCGCGATCCCGGCAAGCGCCATCAAGGTCATGAACCCCGCAAACAAGTCACGCCATCCATCGAATGGAGCACTCTCGATGAACTTCCGCA # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : CTGCTCCCCGCGCATGCGGGGGTGATCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 2 20291-19836 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFWR010000024.1 Micromonospora sp. MMS20-R2-23 contig24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 20290 28 100.0 33 ............................ GTTTGCTGCGGATGTTCGCGAGATCCTCGTACC 20229 28 100.0 33 ............................ CGTCAGGTGAGACGCAAGGCTCGGGTGTCACTG 20168 28 100.0 33 ............................ GCTCCGCTAGGGGGCGGGCGCTGGCTAGCCCGC 20107 28 100.0 33 ............................ CCCGCGGGCCAAGTTCCACCGTCGGTACGCCTG 20046 28 100.0 33 ............................ CCAGCGCCGCGCGGACCTCACCATCGTCGGCCT 19985 28 100.0 33 ............................ CGGTGCCCCGCATGCCTGCGGCACCCCGTAGGA 19924 28 96.4 33 ..A......................... TTCCGCTTGTCGGGGCCCTCTAACTCCGGCGGG 19863 28 78.6 0 ........T............ACC.C.A | ========== ====== ====== ====== ============================ ================================= ================== 8 28 96.9 33 CTGCTCCCCGCGCACGCGGGGGTGATCC # Left flank : TGGTCACCATCCCCGCCGAGTTGGCCGTGCTGTCGGTGGAAACCGCCCACCGGGCAGTCATTGAGTACATCGCGACCGGTCAACGCCCATCGCTCGTCCGATGGGCAGACGACGCGACCTCGCGTAAGAAGTAGCGCGGGCGCGGATCCCGGGCGGACAGCCGATGACACACCCAGTCACGTACGGCAGAGTCACAGCCCCACGTGATCGGAAGAGGATCACCCGTGGACACTGCCGCCTGCGCAACAACCACGGTCAACCCGCTGAGCTGACCGACGCCGAGGACACAGGACGGCACTTCGACGAGCAGACCGAGACGAGCCTGCAACCATCACGACCAAGAAGCCGCTCACGACGCCATCGACAGGCTCCGCGTTCGCTACCATCCTCCACACAACTGCGGACCCCACCAGCGAAGCAGGACCGACCACATGAACGGACTGTCAGCCAAAGTGAAGGAAAACGACGTAATTGATCTTTAGCGCCCCAGGTCAAGAAGT # Right flank : ACCCCAGATGCACGAGCCTGCGCCGCTCGCCGCGCATGCCCGGGGCGGCTCTGTCGTCCCGGGATGGGTCAACGGCCTGCGCTACGGCTTCGTCGGTGCGGCTACTGCTTCCCGTGCTGCCAGCGCATGCTGATGGGGCATTGGCCGGTGGTGGCGTACTCGACGACTGCGGTCCGGGCGGCGGCTGGGGCCACTCGCGCGATGCCGGCAGAGATTTCCACCAGGCCGACGTCTGGCGACTCGTACACGGTGATGGGTTTGTCGGCTTGCCGCTCGGCGGCGTAGCTGCCGTCAGACAGCCAACGCACCGCCGCCCGGTCCGCATCAATGTCCATGTCGATACGGAGGGCGGGTTGATCGTGGGTGCCGACGGTGAAGGTCTGCCCGCAGCCCCCGTACGGCACGATCGTCTCGATCTGCTCATCGAAACGACGTCCCGCACCCTCGGCGTCGGCCAACTCGAAGGCATGGCCGTGGTAGTCGCGCAACAGCACCGTCAA # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 3 23312-22492 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFWR010000024.1 Micromonospora sp. MMS20-R2-23 contig24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 23311 27 96.4 33 ........-................... GAAGCTCGGCCGTTTCGCGACGCTGACCTTCCC 23251 28 100.0 33 ............................ CTCGGCGTTCGCGGGTTGGGCGGAGCCGGACAC 23190 28 100.0 32 ............................ GTGGCGGCGTCGATCGTGCGGGCCGGCTCGGT 23129 28 96.4 34 .................C.......... CGGTGAAGGCCACTCGCACGGCTGGTCAATCGAC 23067 28 100.0 33 ............................ CCGGATCGCGGGGCGGTTGAGGTGTAGCCCCTG G [23050] 23005 28 96.4 32 .G.......................... GCTGCCCAGATCAGGAGATGACCATGGCGGAT 22945 28 92.9 33 .........C...........A...... CGACATCTCGTCGACCAGCCCGGTGCGCAACTT 22884 28 96.4 31 ........................G... GGTGGCTCGGGACCCGGTCGCTCGTCGTCGT 22825 28 96.4 33 ..A......................... CCCGACGGTGTCGCCGGCGATACGGCGCATCGC 22764 28 96.4 33 .....T...................... GTTGTGCTGGTTCCAGACTGCCCCGGTCTACCG 22703 28 96.4 32 ...T........................ TCGGTGAGCGGGATGCGCGGGAACAGGGCGTC GG [22684] 22640 28 96.4 33 .................A.......... CAGGACGCTCTGCCACTGGGCGCGCGGTTTGGG 22579 28 100.0 31 ............................ CCGGACCTGCCTGAACTGGTGGTGCGGCGCT G [22562] 22519 28 75.0 0 .....G................GCGGTG | ========== ====== ====== ====== ============================ ================================== ================== 14 28 95.6 33 CTGCTCCCCGCGCATGCGGGGGTGATCC # Left flank : ATAGCCGTTTTAGAGCCGCTCGGCGGCCTCCTGGACAGGACCGAACCCCTCCACACACTTACAGCGCTGCTCGTAGCACATCATCAACCGGACCTCGGTGGCCAGCTGGCTGGCCTTCCTGACGAGCAGCTCGGAGATATGGGACGGTTCGATCACGCCGGATGGCCAGGTGTTCGCGACTTGACTTGCCGCATGCTGGAGCGCCCCTCAAAGATGCTCCTTGACGGCATCAAGGCGCACGGACATAAGGCGGTCGTAAGTGTGAGCGGTGATATGATTGACCATGTTCCTACAGCCCTGCTTGAGACGATTCTAGATAATGCTGGAGAGTATCCCCTTGGCTGGGTCATCGCTGCCGAGAGAGCTATCTCGCGAAAGCACCACGATGCGCCACTTGCCCAAGTAGCGCAGTCCAGGCGCTGGTTCCCGGGAACAGCCTGATGAGGCATCGGTGGCTAGGGTGTCTCCATCGAACCCGGTGCGGACACGCCGCAGCGTCG # Right flank : GTCGACGCAAAGCGGTGCTCGGCCCCCGTGTCTCACGCCCAACGTACGGGAAGGGAAGGCCGCGACGGTGACGACGAAGCGGATGCCGGCTCCGGAGGCAGTCGGGCGACGGGCGGCACAGATCCCGGACGCGATGCGGAAGCACCCCGGCTGGGAGCGGCCCAACGGGGCTCCTCGATGCGGTACTCGTCCTGCTGGATCGGCTGCGGGACCAGGTCCGTGCAGCTCGCGTCGTGCCGGGGCGTACAGCACCCACAGCATGGGCATGCGGGCGGCCTCAACGAGACCGGGGGAAGCGAGAGATGTCGTACCGGACTGGGCTGCGTGTCGGCCGAAGCGCGGCGCGGTACCGAGAGCGTAGAACGGTGGTACGGCTGACCTGGTGTCCATACGCTTCGATGAACCGGCAGGTGCCGATCGTCGGTCGCGGGAAGGGCTGGACATGCCACTTACCGATAGCATCAGCGGCGAGCTGCAGTCGATGGCGGCGGGGACCGCAC # Questionable array : NO Score: 5.48 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.44, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 4 27945-27366 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFWR010000024.1 Micromonospora sp. MMS20-R2-23 contig24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 27944 29 100.0 32 ............................. CTGTTCCACAGCCCGCCGGAGTTAGAGGGCCC 27883 29 100.0 32 ............................. TGGCCATGAAAGGCCGGTCGGCGATCCGCTGG 27822 29 100.0 32 ............................. GCGGCCACGGTGGCATTCAAGGAGGATGCCCC 27761 29 96.6 32 ............................G CCGGGCGATCGTGTCAGCATCATCGGGCCAAG 27700 29 96.6 32 ............C................ GACGCCCACCCGGTCGGCACCCCCGTCCGCTA 27639 29 89.7 32 .C..........C.C.............. AGGTGCCGGGCCAGCCGGTCCCGGGCGTCCGG 27578 29 93.1 32 ............C..........A..... GTCTTGACGGCCCGCCCCAGAGCCTGCTTCCA 27517 29 86.2 32 ......G....AC...........G.... CCGAGGTAGCGCATGACGACGCGTGCGTTCGT 27456 29 93.1 32 ............C..........A..... TGGAGGCCGGCGGCCCGTGGGTGCGACGCCTA 27395 29 93.1 0 ............C.C.............. | A [27379] ========== ====== ====== ====== ============================= ================================ ================== 10 29 94.8 32 CTGCTCCCCGCGGATGCGGGGGTGATCCC # Left flank : TTCAACGGCCCCGGCATCCTCGACCTCGCCACCTGGCACGGCACCCGCAACCCACCCAACCCACCCCGACTACGCCGCCTCCTCAACCACTACATCCACGCCGGCGGCCACCCCCACGCCCTCCGCAACCGCGCCGGCCTACCCGCCGAAACCTGGGCACTCGCCTGGCACCGAATCTGGGCAGCGGAAACCCTGCTCCACCAAACCACCCTCACCACCGACAACCCCAGCACCGAGACGCTTGACGCGATCCATCGCCAGGCCACCACCGCCCTCGAACTCCTCGGCACCAGATCACGCAGTTCCATCTCTTCGACCAACAGACCATGATCAAGTTCTATGAGAGAAGCGGTGGCTCACGACGCCACCGCCGGGGTATGCGTTGGCTACCATGCTCTGTGGCATCCGGCTGCGGCCTCCACCAGCAGAAGCAGAACGGGCTGTCAGCCAAAGTGAATGAAAACAGCGTAGTTGATCTTTAGCGTCCCAGGTCAAGAAGT # Right flank : AGAACCCGAGCCGCTCCACCGCCACACCCACACTGCTCCCCGCGGCGACGCTCGCGGGGCTTGGCGGTGCACCACAGGACGACCTGACGGCGTAACCTCACCATGGCCCCTTCGTCCGTTGATCTTGCATCCCGGTAACACAGGAGTTGTCGTCGCCTATGCCGATTCGTCTGAGCGGAAGTTCGGAGCGGTACCTGTACGAGCGGCTCCCAGAAAAACGCTTCCAGCAATTGATCAGCGCCTTGCTTGCATTTCAGGATCCTAACGTTACCTGCTTTCCCGTTGGCCAGAGAGATGGGGGGCGAGATGCGGTCCTGAAGAGGAATGGAAAACCCTTCACGATATATCAAGTCAAGTGGGCAAAGGCCTCAACCAAGAATCCTGTCACCTGGCTCACCGCGACCGTCAACGAGGAGAAAGAAAACATTGAACGCCTCGTGTCCGAGGGCGCTCAATCCTACATACTAGTAACGTGCATCGAGGGAACCAGCGCGCCAGGC # Questionable array : NO Score: 5.51 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGGATGCGGGGGTGATCCC # Alternate repeat : CTGCTCCCCGCGCATGCGGGGGTAATCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCATGCGGGGGTGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 33575-32937 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFWR010000024.1 Micromonospora sp. MMS20-R2-23 contig24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 33574 28 100.0 33 ............................ CATGCCGCCGTACCACGACGCCCCGACGGCCAG 33513 28 100.0 33 ............................ CGCGGCGAACAAGGCGTACGACGAGCACATCGC 33452 28 100.0 33 ............................ CGACCGAGGGATCTCCCGGCCGGTCGGCGCGGG 33391 27 96.4 33 .....................-...... CGGCGGACCAGGAGGGGGCCCGCCGCCGGTTCC 33331 28 100.0 33 ............................ CGCCGGCGCCGTGCGGGAGACGATGGACTTCCT 33270 28 100.0 33 ............................ GCACCGCGTCGGCCGCCCCTACCGCAGAGCACG 33209 28 100.0 33 ............................ GGCGGCGCACCGGGCGGCGGTGCTGAAGGTCAT 33148 28 96.4 33 ........................G... CAGCTGAGCCAGCTCTTCGGCCCTACCCGGCAC 33087 28 96.4 33 ...........A................ AGGCCGGGAGATCGTGACCGGGTACCGGGTGGT G [33065] 33025 28 100.0 33 ............................ CACGGGCGACGTCTCGACCCGACTCGGCTTCCG 32964 28 75.0 0 .......T...A.........AAAT.T. | ========== ====== ====== ====== ============================ ================================= ================== 11 28 96.7 33 CTGCTCCCCGCGCATGCGGGGGTGATCC # Left flank : TGGTGGAACCCTCGGCGGCGACGGTGAGGGCATTGAGCTGCGACTGCGCCGTCGCCTTCGACGGGATCCCCGGCGGCGTCGCCGCCGCCGTCCCCGCAATGCCCACCGAGAGGGCTGCGCCGACGAGCATGGCGAGTGCCAGCGTCACGGCGCGCACCCGGGGTCGGGCCAGCCCGGACGTCTTCGTGGTCAGTCCTGACATGCCATGCCTCCAGGTCACCATCAACAGCAGATGCAACCATCATCTTCGATGTAGGTGACGGTGGGATGGCATGCCCGTGAAGAGCCGCAAAGCCAAGTCACAACGCGTACGCCCCTACGGACTCTGCCCGGTATGTCCACGATAGCCACCGCCACCGCCGACTTCGCGTTGGCTACCATCCCCTGTGCATGAGCCGCGAGCCTCAACCAGCGGAACAAGGACCGACCACATGAATAGGCCGCCAGTCAAAGTGAAGAAAAACAGCGTAGTTGATCTTTAGCGCCCCAGGTCAAGAAGT # Right flank : GTGGGAATGTGGCGGCCAGCACCGGAGTGCTTCCCCCGCCCGCATGCACGGAGGTGGCCCGGCTGAAGCCGCCCCCCTTTGCCTGCGCGCACAGAGTTGCCGGCGTCAGCCCGTGGCGGGGTGGCCAACGAGCAGGTAGAGCAGTGCGACGAGGGTCGTTCCCGCGACGATCTGCCGTTTGTTGATGAGCTCTGGGATGTCGGCAAGTGGCACCCATTCCACCTTGTCGCTCTCGAAGCTGTCCTTGGGTGGGCCAACGTGGGTGGCGGCGTTAGCGGTGAAGATGTGGTGTTCGCTGGTCATGAGGCCGGGCGAGGGTTGGCTGTAGACGAGTGGGCGGATCGGTCGCTCGGGTCGCCAGCCGGTCTCCTCCTCGGCTTCCCGGGCGGCCGCGTCGGCGGGGTCTTCGCCGGGGCGGATGCTGCCGTGGGGGATTTCCCAGCCCCAGGTGTCGGTGATGAACCGGTGCCGCCAGATGAGGAGCACCTTGTTGTCGGTGA # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], //