Array 1 152737-150772 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEWR01000001.1 Salmonella enterica isolate STY199, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 152736 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 152675 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 152614 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 152553 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 152492 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 152431 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 152370 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 152308 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 152247 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 152186 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 152125 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 152064 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 152003 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 151942 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 151881 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 151820 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 151759 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 151698 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 151637 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 151576 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 151515 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 151453 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 151350 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 151289 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 151228 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 151167 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 151106 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 151045 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 150984 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 150923 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 150862 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 150801 29 96.6 0 A............................ | A [150774] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8884-7391 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEWR01000092.1 Salmonella enterica isolate STY199, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 8883 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 8822 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 8761 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 8700 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 8639 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 8578 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 8517 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 8456 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 8395 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 8334 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 8273 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 8212 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 8151 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 8090 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 8029 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 7968 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 7906 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 7845 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 7784 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 7723 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 7662 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 7601 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 7540 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 7479 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 7418 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //