Array 1 47457-52684 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHWDF010000004.1 Mesonia sp. JHPTF-M18 4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 47457 37 100.0 36 ..................................... ATTATGGAACACGAACAAAAATTAAAAATAGCAAAA 47530 37 100.0 36 ..................................... CAAAAAGAATTCGATGAATATTTCGAACAAAATAAA 47603 37 100.0 36 ..................................... TTATTTAGGGAATAGGGAGTACAGAGAAGTAACGCT 47676 37 100.0 35 ..................................... TTTACTGCTCAAAATGTTGTTACCGGAGATACAAA 47748 37 100.0 36 ..................................... GAGAGCGCTCATAATTACCAACGTATCGCTGGCTTT 47821 37 100.0 36 ..................................... AAGAAGAGTTTGAGAATACCCACGTATTTAAGGCAA 47894 37 100.0 36 ..................................... CCTTCTTCATCTTGGAATGTAATCATGTCCAAAAAT 47967 37 100.0 35 ..................................... TTGCCCGCCAACCCTCGATTGTATCTGTAGCTAAT 48039 37 100.0 38 ..................................... TAGTAAGTGATTTTTTTTGCTCTTCTTTTAATTCACTA 48114 37 100.0 36 ..................................... CGAATGATCCTAATGCTTTGGTAAGGTACGCAGAAG 48187 37 100.0 36 ..................................... GAATAGAATAAGTATCTTCATCATACTTAAAAAACA 48260 37 100.0 36 ..................................... TCGAATTCTCTTATTCTTCGTGTGGCATTTCTAAGT 48333 37 100.0 37 ..................................... GAGTTTATTTCTAAACTCTTAGATTACAAGAAAGCAA 48407 37 100.0 36 ..................................... CGAAGAAGAAAAATCTAAAAATAAAAAGAGCTCTAC 48480 37 100.0 36 ..................................... TAGAAAGACCCACTTCTTTGAAAGAAAGCGGATTCT 48553 37 100.0 35 ..................................... TTATCGGTAGTAGCTTTTTTAAATTCTTTAGAAAT 48625 37 100.0 35 ..................................... TTTGCCTTATGCTTGTTAACGAAGCTTGTAATAGT 48697 37 100.0 36 ..................................... TCGATGTTGCAGAAGCAGAAATGACCTCTAAACTCA 48770 37 100.0 36 ..................................... TTCCTAAACCTCTGGTAATTACTATCCAAAAGTTCT 48843 37 100.0 36 ..................................... CCAAAATGAATTCGATGGGTATTTATTCTGGTGAAG 48916 37 100.0 36 ..................................... TTGCCGACATTAAAGAAACTCGCCCAAACATTAAAG 48989 37 100.0 36 ..................................... ATCCTGTTACAGACTATTCAACACCAGGGCATCAGC 49062 37 100.0 36 ..................................... GATATGATGAAGCATTACGAAATAGCTAATTCTGAT 49135 37 100.0 37 ..................................... ATTAAAAACACAATAAAATGAAACACGAAATAATTAA 49209 37 100.0 36 ..................................... TATCAGGTATAAGTTACTTCGAGTATACCTTGGATA 49282 37 100.0 36 ..................................... CGAGGTTATAGATGGGCTAGCAACTGAAGTTTATGT 49355 37 100.0 37 ..................................... GACCTAAAAGACCGTGTGGAAGTATTCGTAAGAAATA 49429 37 100.0 37 ..................................... GCCAATGTTAGCAAACGTTTTTCATCTGCTGAAAAAA 49503 37 100.0 37 ..................................... ATTGGTAACTGGCGTTCAGATATTGAAGCGGCTATTA 49577 37 100.0 36 ..................................... ATGACCTCTATTAAATTTTTAGACTCTACATATTTA 49650 37 100.0 37 ..................................... TCTACTAAAAAGACTCATTCTGGAGCGATTGAGTTAA 49724 37 100.0 36 ..................................... CCTGCACAAACAACTGTAAAGGAATTTAAAAGGGAA 49797 37 100.0 36 ..................................... TATCAAGGGCCGCAAGGTTTAAGTGTTGGTGGTAAT 49870 37 100.0 38 ..................................... CAGGAGATTCTAACCCATTATTAACGGTTACTTTCAAA 49945 37 100.0 35 ..................................... GAAAAGGTAGAGTTTGAAGGTTTTGTGCGTTGGAT 50017 37 100.0 36 ..................................... AGATAAACGACCAAATTCATAAAATTAAATAATTAT 50090 37 100.0 36 ..................................... GCATTCTGAATTCATTATACAAACCTAAACGTGAAA 50163 37 100.0 37 ..................................... TTGGATGGTGCTAAAGAAAAAACACTAACCATACCAA 50237 37 100.0 35 ..................................... CTTATAATAAAAATTTTTTCAATTTAACCATTTAA 50309 37 100.0 36 ..................................... AATACACCTGTCGCTAAGTCGTTTAATTCTATCCCT 50382 37 100.0 36 ..................................... ACTCCAAGGCTTTCCCAATAACCAGATAGATCCGTC 50455 37 100.0 36 ..................................... TTCAAGTGGGCATTTTTAGGGTATTCTACAAAGTTA 50528 37 100.0 37 ..................................... ATAACTATAAAATCAAAGAAATGAAGGGACTGCAAAA 50602 37 100.0 36 ..................................... TATATAATTCTGTTGGTTTTATTACTAGTGTCTTGT 50675 37 100.0 36 ..................................... TGAAACACCTGTTGCTGCTAAAATTACCGTATCGTA 50748 37 97.3 36 ..........C.......................... GAAAACACCACACCACATAACACCAATGGATATCAC 50821 37 100.0 34 ..................................... TTATCACAATTAACGCAAACAGTAGCTTCTTTAA 50892 37 100.0 36 ..................................... GACTTGAGTGGAATGGCCGAAGAGCTTCGCTTGGTT 50965 37 100.0 36 ..................................... TGAACGATCAAGATTTCCCTAACTTAGAAGATGATT 51038 37 100.0 40 ..................................... TTCAGCTTTTCAAAAAAAAGATTTTAGGAACAAAAAACAA 51115 37 100.0 36 ..................................... AATGATGAATTGAAAAGACTTCAATTTCAACTACAA 51188 37 100.0 36 ..................................... ATTGGAAATTATCTACAGCACTTTTACAATGCTCGA 51261 37 100.0 36 ..................................... TGAATAATCGAGGAGGATTTCGATTAAGTAAGACTA 51334 37 100.0 36 ..................................... TACGATAGCCTTGCGGAAGAAATGGAAGTTACTACA 51407 37 100.0 36 ..................................... CTGCAGTATCAAACAATTCTAAAGCTATGGGATAAT 51480 37 100.0 36 ..................................... AGAGAAGTTATAAAAGTAACAAATCCTTATAGCAGG 51553 37 100.0 36 ..................................... AATTCAACATCAGAACAATGGCATGAAGCCTTTCAA 51626 37 100.0 36 ..................................... GAATTTATTTCGAAACTCTTAGATTACAAAAAAGCA 51699 37 100.0 36 ..................................... AACATTGGTACTGATGAGCAAAAACAAAGAAAGCTA 51772 37 100.0 36 ..................................... ATTCGTCATTATATGATAGGCACGATTTCATTCTAA 51845 37 100.0 35 ..................................... GCTTTTGATAAAAAAGAGTATCTTGTTAATGTTAA 51917 37 100.0 36 ..................................... TTAATAATACTTAATATTCTTTCTTCTGTAATTACT 51990 37 100.0 37 ..................................... TCGACTTCGGGCGATGGCCAGCTGTACGTGAACGGAA 52064 37 100.0 37 ..................................... GAAAGAAAATTGTCCAACGGTGTATTTTCAAACTGGA 52138 37 100.0 36 ..................................... GAACCTTGAATATCTTCATCGCCTGTTTTGTGGATT 52211 37 100.0 36 ..................................... AGCCGTTGTAACCTCCATTAATAGCACTTGTAACTT 52284 37 100.0 36 ..................................... ATTCTTCCTCAATTTTTGAAACTTCGAGTAAAAACC 52357 37 100.0 36 ..................................... GTACCTGAATGCACTTCATCCAACGCTCGTAAATAT 52430 37 100.0 36 ..................................... GAAATTGTGCAGCAAGGTATGCGAGTTGAGTTATTT 52503 37 100.0 35 ..................................... AACATTGCGAACAACGAGGAAAACACATTATGGGC 52575 37 100.0 36 ..................................... TCACTTCTGTTAAAATTATACTTTGAAAAGCTTTCT 52648 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 72 37 100.0 36 CTTCCAGACCATTCCATTTAGAAACTAGGATTGAAAC # Left flank : TGCTCCTTTAGATTATAAATTTGCCCATTGGAAAGATAGAATTTACGATACTTACAAACAGCAACTTTATTGTTATGCCGTTTTAATTGAAGTAAATTTTCAGGTGGAAGTAAGAAAAGGTTTTTTGGTCTATACACGAAGTAAACATAAATTAATCGAAGTCCCTATTCCACCTGCTGCAAAAGCAGAAATAAAAGAAAGTATGGAAAAAATGTTGGTGATTATTGAGCAAAATAAATTTCCGAAAGCAACAACATTTAAGAAAAGATGTGTAAATTGTACCTACCGGAATATCTGCATTAAATAAGTATTCCGCCTGTAAATTTATTTTTAATCGCTTTAATTTATACGCTTATGTCAGTAATCATGCGGATTTTCGAATACGGAAAAATTACTTATTTTTCGGTTTTTACGTTCTTTGACATATTGAAAAAAGGAGTTTTAGAAATTGAAAACACTGGCTCAAACACTTTTATTTCTGGATTAAGGCAAAAAATCGA # Right flank : CTCGCAACGTGCCATACGTGTGCCGAGAGTAACGATCGGCTGAAAGTCGTTACGCAACTGTTTATAAGATGGTGGAGCCGACCCACCAATGTTGTCCTACAGGGGAGAGCGTTAAACCACCATAAGGTGCTTTGATAAAGAGTCAAGGTATTGAGCGTTATGGAAAAGGCTATGCCACGAGCTAGTCAGGTATGAATACTGGAGATGAATGCAAATGAACCTCTGATGAAGTGTCGAGAACGTGCAACCTTCTGTCAAAAGTGTTTGAAGTATGACAAACATTATAAGTCCAGCGGTCACCTGTTTATTGGCTGGGCGGCAGGCGTCATTTAGGAGGCATGACCAGTATTTGGGCTTATTTACGGAACTCGGGAACCTGTGCCAAGATGCAAAGTGAAATGTACAATAGCGCAAACTAGAGGCAAAATAACGATGCTTGGTATAGGGGCGGACTAACTCGTAGTAGTGAAGAAGCTCCTGTAATGGGAGTGGAGCAAAGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCCAGACCATTCCATTTAGAAACTAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.80,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : NA // Array 2 53347-53529 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHWDF010000004.1 Mesonia sp. JHPTF-M18 4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 53347 37 100.0 37 ..................................... ATGGTTGGATGAAAAGAGTTTCGTTATGAAAAGAAAA 53421 37 100.0 35 ..................................... TGACTTCATCTGCAGTCATAGAAGTATCTGAATCT 53493 37 97.3 0 ..........G.......................... | ========== ====== ====== ====== ===================================== ===================================== ================== 3 37 99.1 36 CTTCCAGACCATTCCATTTAGAAACTAGGATTGAAAC # Left flank : AAAAGGCTATGCCACGAGCTAGTCAGGTATGAATACTGGAGATGAATGCAAATGAACCTCTGATGAAGTGTCGAGAACGTGCAACCTTCTGTCAAAAGTGTTTGAAGTATGACAAACATTATAAGTCCAGCGGTCACCTGTTTATTGGCTGGGCGGCAGGCGTCATTTAGGAGGCATGACCAGTATTTGGGCTTATTTACGGAACTCGGGAACCTGTGCCAAGATGCAAAGTGAAATGTACAATAGCGCAAACTAGAGGCAAAATAACGATGCTTGGTATAGGGGCGGACTAACTCGTAGTAGTGAAGAAGCTCCTGTAATGGGAGTGGAGCAAAGGGGTTAGCTAATTTGATGTACATACTGCCAACTTGAAAAAAGGATGAGCTATTTTTGTATGTCAAGTTAGAAGAGCCGCATGATGGGAGACTATCACGTACGGTTCTGTGAGAGGCTCGGGGTGAAAATCCCCTTGCCTACTCGACACTAACCGTTGGTTGTAA # Right flank : CTGAATTAGATTTAGCAGGTCAAATAAATACAACTAACTTCCTGCCTGTTTTTACCTCCATATTGTAAACCTTCAGCAGCGGCTTCTTTTTTAAAAGTTATATCTTCTCTCCAAACCCAAGTATCTCCAGTTTTTTTTCTCATCCAATCATCTTTGCTCATCCCGGTAGGATATGTATACCTCAGAGGATTGTTGCTTACATAGATATAGGCTTCCATCGTTTTCTCCACTAACGGGTCAACCGAAATAAACCTCCCAATCCAAGCCGCATAATATCGTGCTCCATAATAATAGAATCCTTTCCAACGCGCCAATCTCGCTCCTACACTAAAAACAGCCACTGGCTGTTTTTTTAACGTTCGGCCGCATCACGTTCCTTCCCATAATACCGGTAACGTTTCAGTGAAACTTCAGTTTGGCTTTTACCAGACCGATAACTCATTGCCCCAAATGGGTAATATTCTTCATAAGAAATAATATTGGCAGAATCATCCAACTCC # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCCAGACCATTCCATTTAGAAACTAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.80,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA //