Array 1 63354-60924 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABHXV010000078.1 Yersinia kristensenii isolate IP36506, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 63353 28 100.0 32 ............................ CGTTTGCCGCTGTGAATGGACAGGTATTTATT 63293 28 100.0 32 ............................ AGCAGCAACAGTACAGCAAATAGAAGCACTGG 63233 28 100.0 32 ............................ AGTGGTTATGCCACCACTTGAGCTCCTTTTTT 63173 28 100.0 32 ............................ GGCGTATGTCCAGCGGCGTAACTCATCACAAG 63113 28 100.0 32 ............................ TAATCCCGGCCCCCAGACTGACGCTTATTATT 63053 28 100.0 32 ............................ AACGGTAGGCAGTTTCCCGTATAAACCATTGC 62993 28 100.0 32 ............................ ATCATGATTTACCCCTGCTCTCCTCAATCTTC 62933 28 100.0 32 ............................ TACTGCATCTGTTCGTGGTGGTGTATTACAAC 62873 28 100.0 32 ............................ TTCACGGCGGCAAGTTATCAGTGACGGTTTTT 62813 28 100.0 32 ............................ ACTGTACAGCGTATGCGAGGCGGCGATTTCAC 62753 28 100.0 32 ............................ AATTACGGGAGAAGTCCAATGTCTCCAGTTCT 62693 28 100.0 33 ............................ GCGCATTTTGGGTGTGCCGGGGCTGGATAATCT 62632 28 100.0 32 ............................ ATATTGATGCGGTTTACCGCGGCTTAATTGCC 62572 28 100.0 32 ............................ TGTTGACCACACCGGCCTTGAAAATGACATCA 62512 28 100.0 32 ............................ GGCAAGCAACAAGGTGGCGGCAACTGTCCATG 62452 28 100.0 32 ............................ GGGACTTTAGTTGGGGCAACATGAGTAACGGG 62392 28 100.0 32 ............................ AATGATGTGAAGGGCGAACGCCACGCTATTGT 62332 28 100.0 32 ............................ ACTTATCATAAAGAAGATATCAACACCCAGTC 62272 28 100.0 33 ............................ TTCAAAAGCGGCAGCAAACGCCAGGGAAATAAT 62211 28 100.0 32 ............................ CGAATCCTGACTATAAAGCCATTCTGGCCGAT 62151 28 100.0 32 ............................ ACTACACCTTCTGCCGCACCAGCACCACGATT 62091 28 100.0 32 ............................ TCACGTGAGTAATCTTCTTTGTGATGCTTAAT 62031 28 100.0 32 ............................ AAATGGATGCATCGGTATCAATTGAGACTCAG 61971 28 100.0 32 ............................ AAATGGAACAACAGACAAATTCAAAAGCGGCA 61911 28 100.0 32 ............................ ATTTCAAGAATTGATCCGAAGTTGGTGTTCCT 61851 28 100.0 32 ............................ AGTCATTGTCCCGCCAGATAATGACAATTTGC 61791 28 100.0 32 ............................ TAAACCGCCATTGCTGAATGCTGAACCGATAA 61731 28 100.0 32 ............................ AGATGAATTAACAGCTAGTTCTACACCCGTGC 61671 28 100.0 32 ............................ ACTGAAGTACTCGAGTGGGTTAACAGTCAAAT 61611 28 100.0 32 ............................ TTGAAGCAATGAATCAGACGATGGCGACCACT 61551 28 100.0 32 ............................ TGTGGCGGCGAATTGGCAGAATACGCAAGAAC 61491 28 100.0 32 ............................ TGAGTTCAAGGCTGGTGATGTCATTGTTGTTG 61431 28 100.0 32 ............................ AATCGCGGAGTCTGTAGCTGTAATATTATTTT 61371 28 100.0 32 ............................ GTTTTATGTTTGTTGGATTAAAGGGGTTATAT 61311 28 100.0 32 ............................ GTCTGCAATTTTCCATGAAAAATCTGGACGTT 61251 28 100.0 32 ............................ GCTCTACCAACTGAGCTAAAAACTGTAATAAT 61191 28 100.0 32 ............................ CGAATCCTGACTATAAAGCCATTCTGGCCGAT 61131 28 100.0 32 ............................ ATCTGGCCGCGTGACCGGGCGCGCTTATCCCG 61071 28 100.0 32 ............................ TAGTTTGGACCAAAAAGGATACGCAAAAGATA 61011 28 100.0 32 ............................ TAATCCCCCAAGGGGAAGAAATCGAAGAGATT 60951 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 41 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GCGATTTAGCCGAATTGCAGTCTGCGGGCTGGCTGAAAGGTTTGCGGGATTATTGCGAATGCAGTGACATTCTTCCCGTGCCAGCAGCGGTTAAATACCGTGTCGTGCGCCGCGTGCAGGTGAAAAGTAATGCGCAGCGGCTACGCCGTCGGTCTGTCAGTAAAGGCTGGTTGACGGAAGAAGAGGCACTATTGCGGATCCCAGATAATCGTGAGCAGCACTGTCATTTACCTTTTTTACGCTTAAAAAGCCTATCCAGCGAGCAAAGCTTCTTGTTATTTATTGATCAAGGAGAGTTACAGCAAGCACCGGTTAGCGGAACCTTCAGTGCTTACGGTTTAAGTGCCATAGCCACTGTCCCTTGGTTTTAACCCTCTTTTTTCGGCCAACTCTAACTCATTGATTTTATATTGAGTTGGCCGAGAATATTAAAAAATCCTTTTTTATGATTTTGGTGGGTTATTTGATAATAATCAGTAAGTTATTAATATTTCGTTACT # Right flank : TCTATCCGACGTCTTATTTCTCCTTTTTTGTTGAATACCTCTAAAGAGGTATATATTTGATTTTATGTAAAAATTGTTTGGTGCTGAGTTTTTTTTGAGCTGGTTCATAAAATCAAATACCCACACAAAGAATGTTTGATCTAAAACAAGCATTGTTACTACAACAAATCATTTACTGAAAATCCTCCTTACTATCTCCATAACCCCACTGGGCGAAATCTGTCATGGGTATCTCTGGGTGAGTGTTTGACATCCTGGTGCGGGTTTAAAAATAAAAAATGACTGCCTGGTGCCAGCACCGGCGGCGTCCGGTATGGAAAAACACACTGGAGTATCTATTGTGAGCAAATTTATAAGACAAATGTCGGTAGGGATATTGGCGCTTTTGGTCATCGGAGGGGTGTTTTCTGTGTCGGCAGCACCTACGCCGCCGATTGAGGCCCGCAATGATAAGTTCGCGCAGCAGCATGTGGATCAATTCACCTCTTGGTTGAAAACCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [68.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 73629-71857 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABHXV010000078.1 Yersinia kristensenii isolate IP36506, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 73628 28 100.0 32 ............................ ATAACCATCCCAGCATCATAGTATCTTCCGTT 73568 28 100.0 32 ............................ GAATGCGGATATTGTTATCGCTAGTGCTCAAA 73508 28 100.0 32 ............................ AACACCGGCAACAATCTCGCCATCCAGAACAA 73448 28 100.0 32 ............................ GAGTCGTTTGCACTGGCAACCCTCCCACCTCA 73388 28 100.0 32 ............................ AAAGTAGGCGACCACCATATCCCAGCCCAGAG 73328 28 100.0 32 ............................ TGTAGCAGCACCTGTAGCAGCACCTGTAGCAG 73268 28 100.0 32 ............................ ACCAATGCCACCAACCATTTAACGGATGCATG 73208 28 100.0 32 ............................ AGCGTCCGCATGGAGCATCGTGGCGACATTCG 73148 28 100.0 32 ............................ GTCTTGCATTCATCTTAACGCAATCAACGCGG 73088 28 100.0 32 ............................ TTCATCGAAACTATGCACGGCAAGAATGTTTC 73028 28 100.0 32 ............................ TCTCTCTGTTAATAGAGAGGGCATTTCATCAC 72968 28 100.0 33 ............................ GATGATTGTCATTATGCAGCGCATCCATTACCA 72907 28 100.0 32 ............................ ACCAAGCCGAATTGGAACGTGGGCGTACTGAG 72847 28 100.0 32 ............................ GATACTCACCAGCCTCTCAACCTGATCTTTGT 72787 28 100.0 32 ............................ TCGGTTTATACGATGGAGGGAATAATGATTCA 72727 28 100.0 32 ............................ TCGTGGTTTCGCTGAAGCAGTTTACCAGGCTA 72667 28 100.0 32 ............................ CACAATTCCCCGCGTCCTGCGGTGGTTGCACG 72607 28 100.0 33 ............................ CTTGAAAAAATCCAAGTATGGCGATGGTATGAC 72546 28 100.0 33 ............................ GGAGTTCAGGGAAGCCGCCGACAGTTTTAAAAT 72485 28 100.0 32 ............................ GCCTAAACTAGTATCTAAAACAACAGCGATCC 72425 28 100.0 32 ............................ CTACGAACTTCAATTATCCCAGCTCTGTTCTC 72365 28 100.0 32 ............................ GGCTTAGTCAAACTGTTGATTGCCGAGCGCAG 72305 28 100.0 32 ............................ AGCATCAACATAAATCGCGAGGGTGTCATTTC 72245 28 100.0 32 ............................ AGACAGCGTTTAACGATTGAGTTCATCGAACA 72185 28 100.0 32 ............................ AGCGGTTCGAATGCAATGCAGCTCATCACCAA 72125 28 100.0 33 ............................ ACATAGAGGGCGATTTACCGCTGAATTGGACAA 72064 28 100.0 32 ............................ TGCCTCCCCATTGGGGAAATTAATCCCGGCGA 72004 28 100.0 32 ............................ AACGTAGCCTAGGCTTTTGGTTACAAAGAATT 71944 28 100.0 32 ............................ ACGAGCCGCTTTGCCGTTTGATTCCAGTTTCA 71884 28 78.6 0 .....................AGCATC. | ========== ====== ====== ====== ============================ ================================= ================== 30 28 99.3 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GGCTTTTTGGGCGATTAAACACAAACAAGCTTTACAAGCGGCGGAGCTCTGTTTATAGTTCGGCTCGTTGCGGAGGGGTGGCCGAGTGGCTGAAGGCAACGGTCTTGAAAACCGTCGACGGGTAACCGTTCGAGAGTTCGAATCTCTCCTCCTCCGCCATCATTTCTCCGTTTCTCCTGCGTATTATCCCTGTTTAATCTCCTGAAATACCTTAATTTTTATCCTGTGATATTTATTCTTTCCGATATAACAAAACGAGCAAAACCCACCCCAAAATAGTGAACTATAACTTTTTCAAACTCCCCTTTTGTTTGTCACATCATCCTCAGCAGAAAAGGCTTCATGACATTTTACCTTAATCTCAACTTGAACCCTTTTTTTAGAGTGTTTTTTAACTCGTTGATTTTATATGAAAATCACCAAGGTTTTAAAAAAATCATTTTTTATCACTGCGCTTCAATGCACTTTTATTATCAGTAAGTTATCTGTATTGTTCTACT # Right flank : AGATTGAGAGCCAAAACACATTTTGTTACTTACAGTCGGCTTATTACTGTTTTCTATTACCGGCTTTGCCGGTATTGGGTTAGTGTAAATAAATTAATCATATCAATATCGTGCGGACCTCTATCTTGGTAAGACGCGCTCACTTACTGGCAAGATATAATTAACCCGTTAGAACGATTTGGGCATTCTGTCTAAGGAGGTTGCTGGCGATGGACAATTCTATTCATTCCTCTGATCTGAAAACAATTCTGCACTCAAAGCGTTCAAATATTTATTATTTAGAATATTGTCGCGTATTAGTTAACGGCGGGCGGGTTGAATATGTCACTGATGAAGGGAAACAATCTCTTTATTGGAATATCCCCATCGCGAATACCACTGTTATCATGCTGGGGACGGGGACATCTGTGACTCAAGCCGCTATGCGCGAGTTTGCCCGCGCCGGTGTTTTAGTCGGTTTTTGTGGCGGTGGTGGCGCGCCACTTTTTGCGGCGAATGAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //