Array 1 85073-85242 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZFV01000068.1 Amycolatopsis panacis strain YIM PH21725 NODE_22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 85073 30 100.0 38 .............................. GGCAATCCACCAAGCCTTGTGACTAGAACTTCCGACTG 85141 30 100.0 42 .............................. GGCAGTCGCGGAAGGTCGGTGCGGTAGACCAGCGTGGTCCTG 85213 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================== ================== 3 30 100.0 40 CCTCCGGCGCTCCGCGCCGGACTCCATTGC # Left flank : GATCCCCGAATACAAACCAATGATCACCAGGTAAGCACTCATGGCCCGGCATCGATCCATGATGGCCTACGACATCGCGGACCCCGCGCGACTCCGACGAGTCTGCACGCTCATGGAAGACCACGGCGAACGCCTCCAATACTCGGTCTTCCTCTGCGACCTGTCCCTCGCCGAACGAGCGGAACTCGAATCACTCGTCACCAACGTCATCGACCTCACCCACGCCAGCATCATCCAAATCGACCTCGGCCCGCTCCGATCCGCGGCACCGATCCGCACCCTCGGGAAACCTCGAACGCTACCCGACCCCAACGCCAAGATCATATGAACCGCGAGCGGTCCAGCACCCACCCAACTCCCAAGCACCGCTCGCGCGCAGATCAGACCGCGAATCCTGCCTCCATCCAACCTCGACCATCCGACTTCAAGGCGTACATCGACGACCGCTCGCAGGGCCAGGTAACGTCCCAGGTCACGACCTATAGAATCCGCGAGTCTTA # Right flank : CCAACCGAGCCATCGCGGACGGCCTCATCGCCGCCGCGGCCAGCCCCGCGCATCGCATCGCCAAACCCGCAGGCTTCAGAGCACCCGGAGAGCGCTGGCTACGCGAGAACAACTCCTGATCTGTCACCCACTCACATCCCTCCCGCCGGTTGTCGTAAACACGCAACGACGTGCACGTTCACGGCCAGCCGGACCCACGGTAACGGCCACCACCAACAGTCCGCGGCGACGACACCCGGGCCAGCGGTCCCGGCGGTAGACCACTCAGCCGGGGCTACACATTGCGAGGCGCAGCCAAACTCCCGATGGCAGGCAGGGCACGTATGCAGCCCGATCTGAGAACGCTGCCTGTCATCAGCCTGCGCCGTCCGGCGGTGGTGGTGCCCGACGCCGTCAGGTGCCGTCAGCTTTGCCCTCCAACCTCAGGGTTTGCCTATCATGGGATAGAGCTGGCCCTCCTGCGTAGTCCCAGATTGTGTCAATCTGTTGTCTCTGCGGAA # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTCCGGCGCTCCGCGCCGGACTCCATTGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.50,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [40.0-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 1 76300-75511 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZFV01000061.1 Amycolatopsis panacis strain YIM PH21725 NODE_16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================================== ================== 76299 29 100.0 32 ............................. AACTACGTGTCGCTGCGCGCAATGACCGCTGG 76238 29 100.0 32 ............................. CCCTCGCGGACTGCGTGATCGAGCTGCACGTG 76177 29 96.6 32 ............................G TACTGCTGCGCCTGGCCGGAGTCGGCGACAAG 76116 28 96.6 32 .....................-....... CATCCGCGACCAAGAACGTCTCGGCCAAGTCG 76056 29 100.0 32 ............................. GCGCGTCGGGCACGGCATCTCCTCGCCGCACT 75995 29 93.1 32 ........G...................G GAGCTTCATGAGACTCCTTGACGAAAGTGAAT 75934 29 100.0 32 ............................. CGCATGCACGAGGATGTCGCCCTCGCCCGCGA 75873 29 96.6 33 ............................G CTCGGCGAGCAGGTCCAGGTTGCCGGATTCACG 75811 29 100.0 32 ............................. GTGGTGGAGGCGGCGCAGTGGGAGATGTTCCC 75750 29 100.0 32 ............................. TGGCCGTTCATGTCCCAGCCGGGCCTGGACCC 75689 29 100.0 59 ............................. GTGGCAGGTACTCATGCAGGTGGTCCGTCACCTCCAGAACGGGGGTCCCTGAAGGCGAC 75601 29 89.7 33 .C.....................A....A GCTCCGGCGCGAAGGGCTGCCCCGTTCCCGGTA 75539 29 86.2 0 T.........T.T...............A | ========== ====== ====== ====== ============================= =========================================================== ================== 13 29 96.8 34 GTCTTCCCCGCGCGAGCGGGGGTGGTCCC # Left flank : TCGACCTGATCCTGGTCCAGGTCCTGCGGCTGTGGCACGACCAGGACGGCGGCCTGCCCGCCACCGACGATCCGGGAATCGCCGCCGCACTGCGCCGGATCCACGAGCACCCGCAGCACCCGTGGAACGTGGCAGGGCTCAGCGAGATCGCCGGGCTGCCGCGGACCGCGTTCACCCGGCGGTTCACCGCCCAGGTCGGCCAGCCGCCGATGAGCTACCTCACCGGCTGGCGGCTCGGCCGCGGCGCCCGCCTGCTCCGCGAAACCGACGCACCCTTGGCGACGATCGCCCGGCAGGTCGGGTACTCCACGGAGTTCGCGTTCTCCGGGGCGTTCCGGCGGCATTACGGGGTGGCTCCCGGGCGGTTTCGGCGGACTGCCGGGGAGGTGGCTTCGGTGGGGTGGCTGTGGGTGGGGCGGCGTTGCCCGGTTCGTGCGGGGCGGGGATGCAAAGTGAAGCAAAACTGGGCACGGCGAGGGTAAACTTGCAGGTCAAGAAGG # Right flank : CAAATCGAGCACACCGAACCGGTCGAATGGAACGCACGGATGCACCTGATCGACGAACGCGCAAGGTCGCTGACCGACACACAATGGTCTGCCGCCTGAGCCTGCCGATCAGCACCTTAAGAGCGCAGGCCAGAATCAACGGCAGCAGAACGGAGAGCACCAGTGACCCGAGCCGAGATCGAACGCGACCAGGTCGGCTACATCCAGCACATCGACGTCGTCGTCGGCCACATCAGCGACGTCCAGGCCGGACACAGCCAACGACTAGACCGCATCGAACGAGTCCTCACCCAGCACACCGACCAGCTCAAAGCGATCAAGACCACCCAGGACGCCATGCAGATCCAGCTGAGCGAAATCCTCACGATCCTGCGCAACGGCAAAACAGACGGCTGACCTGCCAAAACGATCAAGGGGCCTTCAGTCTTCCCCGCACGAGCGGAGCTGATCCCGACCCCAGCCGCCGGACCCGGTCGCCTTCCTGCGAGAGCGGCGCATCA # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:-0.09, 8:1, 9:0.96, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCGAGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCGCGCGAGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 80534-80260 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZFV01000061.1 Amycolatopsis panacis strain YIM PH21725 NODE_16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 80533 29 96.6 32 ..G.......................... GTCATCGCGTTTGCGCTGCCGTGCATGGCCTG 80472 29 96.6 32 ............................T CGTATCCTTTAACGGGAACCGGTAAAGGGGCC 80411 29 100.0 32 ............................. TCGGGCAATCGGAAGTACCACGCGATCCGGGT 80350 29 96.6 32 ............................C GATGCGAGCAACCTGCTGATTGACCCGAAGAG 80289 29 93.1 0 .......................A....C | A [80267] ========== ====== ====== ====== ============================= ================================ ================== 5 29 96.6 32 GTCGTCCCCGCGCGAGCGGGGGTGGTCCG # Left flank : CGACGACGACCGAGACGAGGATCTGTGACCGTCCTCGTCATCGCCGCCTGCCCCGTCGGCCTCCGCGGACACCTCACCCGCTGGCTCCTCGAAATCTCGCCCGGCGTATTCATCGGCACCATCACCACCCTCGTCCATGAACTCTTGTGGAACCGGGTCATCGAGATGGTCAAGAACGGCCGGGCCATCATGGTGTTTCACGCGGACAACGAACAAGGCATGGATTTTCATGTCCACAACCACACTTGGCACCCGACTGACTATGACGGCATCCAGCTCATGCTCCGCCCCACCCCACTGCCGACCGATAGTGCATCCGACACCGCTCCTGGCGCCGCGCCTACGCGGAGCTGGAGCACCACCGGACGCCTCCGCCGCTACGGGCGGCGCTGACCGACCCGACCCAGGGGCGGCACCCGCGGGTAGGACTCAGCGAAGAGGATCGAAGCAAAGTGAAGCAAAACTGGGGATCTCGTGGGTAAACTCGCAGGTCAACAAGT # Right flank : CGAGGTCATTTGCACGGCCATCGGGCGGCGTCATTCGCCCGGCTTGCCCCGGGTACGCGGCGAACCCGGTCCCGGCTCACAGTCCGAGGTGCAGCCGCAAAGCCGTATCCAGCTTGCGGATCCGGTCGGCGTCGAGCCGTCCGCAACGGCGGCCGATCCGCTCGACCGCCACCGTCCGGACCTGCTCCGCCTGTGCCTTGGAATCGCGATGTAGCCCCGTGCCGTCCGCAGGCAACAGCACTTGAAACGGATACACCCTGTCCACATTGGACGTCACTGGGACGACCGTCACCACGCCCCGCCCGAGCCGCTCGGCCGTCGCATTCGCCGTGTCGTTGCTGACGATCACCGCAGGTCGGGTCTTGTTGGCCTCTGAACCCCGCGCCGGGTCCAGGTTCACCAACCGGATTTCACCGCGTCGCACGGATCACGCCTCCAGGCCGTCGCCGACGATCGCGTCCCACGCATCAGCCTCGCCCGACGTGTCCCAGGACCCCCAT # Questionable array : NO Score: 3.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCGAGCGGGGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCTCCCCGCGCGAGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //