Array 1 524740-528611 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033381.1 Methylomonas sp. LW13 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 524740 29 100.0 31 ............................. TGGTCAGAGCTTTATCCCGCTGTCGATGTGC 524800 29 100.0 32 ............................. AGTCCGCTGCCGCCGCACAAGTTGCTGCCGAC 524861 29 100.0 32 ............................. TCTTCAATCGTGCCGTCCAAATGGGTGCAACG 524922 29 100.0 32 ............................. ATTGATTTGATCTTGAGGTAAAGCTGAGTCAT 524983 29 100.0 32 ............................. CCCCGGCAGCGATTATGACCCGGCGAGTTTCC 525044 29 100.0 32 ............................. AAAAATTATTCATCACTGAATATGATAAACGA 525105 29 100.0 32 ............................. TTAATTTCTTCGGTTCAATTTCCGCGTTAGAA 525166 29 100.0 31 ............................. CCGAGCCGTTTGAAAAGGTGAGAGATGCAAC 525226 29 100.0 32 ............................. GATAAGCTGTCGGCGAGTGATAATCCCCAGAC 525287 29 100.0 32 ............................. GCGACGCCGGAAATCGTCGCGGTTATTTTAAA 525348 29 100.0 32 ............................. GCTGCACGTAGTTATCACCCATCTCCAACACC 525409 29 100.0 32 ............................. TCAATGCAGTTCTTTCCAGTTATCTGCATAAA 525470 29 100.0 32 ............................. TTGGCTTCGCCGACAATTACAGGGCGTATTGT 525531 29 100.0 32 ............................. CTCATGCCCACTTTGTCGCCTTTAATTTCTTC 525592 29 100.0 32 ............................. CCTCGACAAGTTGGGGAACTGGATTAGAGCAG 525653 29 100.0 32 ............................. GTTATTGCCATATGCAACCAAAACCCGCCTAG 525714 29 100.0 32 ............................. CACCATAGCATAGCCAGAATAAACAGAAAAAC 525775 29 100.0 32 ............................. TTCGTTTAGTTCATCATCGCTCAGTGGTTCGC 525836 29 100.0 33 ............................. CACAGACCGGTAAACCAGATCCACTGCCTGTAC 525898 29 100.0 32 ............................. AATACGGCACTTTTTTAAAGAACATAGGCACT 525959 29 100.0 32 ............................. GCTTTGGCCAGCTTGTCGGCGGATTGGGTAAT 526020 29 100.0 32 ............................. TTATTGGGGGCGATTGCATGATTAACTTATTA 526081 29 100.0 32 ............................. AATTAACCGAGCACCCCATATAAAGAGCATAG 526142 29 100.0 32 ............................. GCGATTGGCATTGCCCAGTGGCATCCTGATAG 526203 29 100.0 32 ............................. GAAAACGGGATGGCGCTCTCCTTGTAGCCCGC 526264 29 100.0 33 ............................. CAAAATTAAGCTCTGCTACCGCATCAAATTTCC 526326 29 100.0 32 ............................. CTATGGGTGTTTGGCGTAGTTTCGTCAATCAT 526387 29 100.0 32 ............................. CCGACCTGGAAATACCGACCAGACCCCCGGAC 526448 29 100.0 32 ............................. ATAGCCGGCGCGCCGTCGTGTATCCCCGCGAT 526509 29 100.0 32 ............................. CGTTCTCTTGGTGCGTACCAGAGCGACAGGTC 526570 29 100.0 32 ............................. CTTAGAGCATGACCGACACAACGGCTCAACCG 526631 29 100.0 32 ............................. TTGTGCCCGTCTTGCAATGGGTCTGGTGTTAA 526692 29 100.0 32 ............................. CCAAAATTGCATCTGTGCTATGCGCTGGGGAT 526753 29 100.0 32 ............................. CCTGCCCGGAAACGGAGCGGGCTTTTTTTATG 526814 29 100.0 32 ............................. CTGACTAAGCGGGAAGTGCGCGAGGGTTTGCA 526875 29 100.0 32 ............................. CTGACGATGCCGCCGAGCATGGATAAAACGAA 526936 29 100.0 32 ............................. CACTGACCGCGTCTTAACCATCAGCCACGAAA 526997 29 100.0 32 ............................. GCACTACCATATGAGTATAACCGTACAATTCA 527058 29 100.0 32 ............................. GATTTTGCTAAATCTCTGGTTTCGGCGTTGAT 527119 29 100.0 32 ............................. TCCAGATTGACGTTAACCACGGCCAGCGTCAG 527180 29 100.0 32 ............................. TTGCGCGCGGGATTTTGCGCTTGGCCAGAATT 527241 29 100.0 32 ............................. CCGGTGGCATTGGGTTATGACCCTAGCCGCAC 527302 29 100.0 32 ............................. GCGATGATGTAGGCCTTAAACACTTCCGCCTG 527363 29 100.0 32 ............................. AATTGAATACATCGCAACAAAAGACCGTGAAA 527424 29 100.0 32 ............................. GCGGCAAACGCCTGCAAGAAGCCATCGACGAA 527485 29 100.0 32 ............................. CCAGCACAGCGCATTTCAATGCAGCTTCAATC 527546 29 100.0 32 ............................. CCGCTTCACTAATCAAAGCGTTCTCATAGGCG 527607 29 100.0 32 ............................. TCAAACAAACATCCTACTTATGGTTTGCCAAG 527668 29 100.0 32 ............................. TGCAGAATCGGCCCGTGGTAGGCGTTGGCATT 527729 29 100.0 32 ............................. TTAACAACCAGCTAACCAGGAGTAGGAAAAAT 527790 29 100.0 32 ............................. CGGCGGCTCTTTGGCGCTGAATGAGCCCGGTT 527851 29 96.6 32 ............................T ACTTTGCCTGCCGGCTATTCAGTTTGATCGTG 527912 29 100.0 32 ............................. GCGAGTTTAACGGCAACGCTTACAACTACGTG 527973 29 100.0 32 ............................. CCAGGAAAGTTCGACCACATCGGCGGTCGTCA 528034 29 100.0 32 ............................. CACCAATCCAAAAAGGCAACCAACGCAAAGTG 528095 29 100.0 32 ............................. TATGGAGTTGCCTGTTGGGTATAGCATCTGCA 528156 29 100.0 32 ............................. CGGGTAAGCACCGCTTTTTGTGAGCCTTCGCC 528217 29 100.0 32 ............................. TCAACGATGCTATCTCGCCACCGTTAAACCCG 528278 29 100.0 32 ............................. TTTTGGAATTTTGCCCAGGCGTCTATGTCGGC 528339 29 100.0 32 ............................. CCAAAACTCACCCTCATCGCTTTCATATGTGC 528400 29 100.0 32 ............................. CCACGAAAAAGCCGCCAAGATTCGCGAGGATT 528461 29 100.0 32 ............................. ACTGAGCGCAAAAGCGAAGTTAAACGCTGTAA 528522 29 96.6 32 ............................A GGTTATGTCGCACCTAATTCTGGCGCTGTAGC 528583 29 89.7 0 ..........................TGA | ========== ====== ====== ====== ============================= ================================= ================== 64 29 99.7 32 GTGTTCCCCGCACCCGCGGGGATGAACCG # Left flank : ATTGCCCCGGCCATTCCCAATGCGGAGGGCATCGGCGATGTTGGTCATCGTAGTTGAAAACGTGCCGCCCAGGCTGCGCGGACGCTTGGCGGTGTGGTTGATCGAGATTCGCGCCGGGGTTTACGTCGGCGACTTGTCGGCCAAGGTGCGGGACATGATCTGGTCGCAAGTCGAGCAGGGCTTGGAGGAGGGCAACGCCGTGATGGCCTGGTCCACCAATACCGAATCCGGTTTTGATTTTATGACTTTAGGAAAGAATAGACGGCTACCGGTAGAGCTTGACGGCTTGAAACTGGTGTCGTTTTTTCCGCCGGAAGAGGCCGATTTGTCTCCCTCGCCCTCCGGGCGAGGGGCGGGGTGAGGGTGCACTAAATTCCTGTTGGGATATAGGGCGCTGTAAGGGTAGTCGCCAGCTTTTTAACAACTTGGAAAATACCGAAAAATTTGGTGGAAATTTAGCCAGGTTGTTTTTATATGCGTAACAATGAGTTACGATTAGT # Right flank : ACTTGTTGTTGATCTTCCTCATATCGACTCGTGGCGTTTGTGCAAGTGTCGAGGTATGGAATGCGGGGGATATTCTAGCGGAACGGGTATCTCTGATCGGCTTGCCGGCAGGGAAATTGCTAAAATGGCCTGTTGGCAGGCGAAGTGGATGTTTTTCGGTATTCGTTGATTCGGTTTGTATTAGCTCGGTTCCCCGGGATTAGAAGAGGATTTTATATGATGTTGCAGCAAGGCTTCGCCGATGTTACCAGGGTCGATGCGCGGGAGATGGTGGTCTTAAACAGCCGCAAATGTCGCGGATTTGCTGGTGTCATTAACTGATATGAACAAGATTCCACCCAAACGCGGCCTGGGCCGCGGGCTTGAAGCATTGTTAACCGATATGCCGGCTAAATCGGTAGCGGATAAATCAAGCATTAAGGCGGAAACCGTTCCGGGGCCAGCCGTCCGCCAAGAAAATAGCGATTTGCTTCAAGAAGCCGAAGTGTTAAAGACCCTGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACCCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCACCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1187201-1186578 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033381.1 Methylomonas sp. LW13 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 1187200 36 80.6 37 .G...GGC.....T.........A.A.......... CCGAGTCGGAGCGTATGGCGCGGCTGGAAGGCGAAGT T,T,G [1187187,1187191,1187193] 1187124 36 94.4 37 G......C............................ TACCCAGGCCAAACAGTCTAGTACTAACCCACCCTAT 1187051 36 97.2 38 G................................... CAATCGTTTTAACCAAATCACCAAAAGTAATGCCTTCG 1186977 36 100.0 39 .................................... CAAATAGGCGCCGGAAAATATCAACCGACTTTAATCGCA 1186902 36 100.0 36 .................................... ACCGTCCTCTTGGGCCTTAATCGCCATTCCCTTTCC 1186830 36 100.0 37 .................................... TATGGGTAATTATTTCCGCCTTGATTTGCGTAGCGTC 1186757 36 100.0 36 .................................... CGATATCGGCATGCCCGAGAATCTTCTGCAGCGACA 1186685 36 100.0 36 .................................... GGGTTGTTGCCGTTTCCGTCGTTTGTATTAGTGCCG 1186613 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 9 36 96.9 37 CCTTCAATGAGGCCCCGGCGGGAGGCCGGGGAATGC # Left flank : CCACCACATCCATCAGATGCGTCGTACCGCAGGCCAGAATGAACACCACAAACAGCCACAACACTCGGACATACGGAAAATCCTGCCGATGCCGCGCGAAATAACCCAAGGCAACCGGCAGCAAAAAGTAAGACAGAAATATCAAGCCATCGCTGATCACAAAGGTCCACAACAAACCCGGCGACCAGCTCAGGCAATAGCCATGCGGCATAAAATTATTGTCGGTCAGAAACTTTAGAATGTCATTCATGGCAGGAAGATCGGTAATAGTGATTTGCACGATTTAGGGAACTTGAACGACATACCGTCGCCCCGTATCCGTTAGCTAACGCATAACCCGCATTTGGATTCTCTAAATCCGATACAACTAAACATAGCAGCTAGCCCAAACAGCGTAAGGTTTAGCCACTTTTTATGTGGAATTAAATGCTGGCAGCAGGTAGATGGTTGGGGGGAATACGCTTGGATTATTGACCCGGCCCTATTTATCACGGATGTGC # Right flank : AGCGCGGGCTGGAGGCCATGATTGGCGCGGCCTGCGCGGGCCGTTTGCGAGGACTGCGTAAAACGGCCGCTCAACTTTAGCGGAAAAGTTTGCGCCGCGCCAATCCAACTTGCTAAGTGTTTGATTGTTAAAGAGCTGCCAGCTTGCGAGAGCTGACCGGTTTTTGCGCGCCACTACAGCGCTCGCAAAGCGGCGGCGGAAAATCCACATCAGACGATGACCGGCTGACGTTCCACCACATCGAAATCCTTCCCCAAACTGACCACCGAGGGCTTCACCGTTTCCGCCGGCCCGACATTGATGATCAGAACATGGTCGTCGCTATGATGGATGATGCCATCCAACAGCGCGATTAATTCCGCATGGCGCTTACGACTCAGCCGGCATTGAAACACCGACAATTGCAGCCAATCGCCATAACCTTTCATCAGCCGAAACACCCGCCGCCAGCGTTTGGTATCGCTGATGTCGTAAGTCACGATATACAGGTGTTCGAGGGC # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTTCAATGAGGCCCCGGCGGGAGGCCGGGGAATGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-14.90,-16.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA //