Array 1 1736-2768 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWLG01000028.1 Thermosulfurimonas dismutans strain S95 contig00028, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1736 30 100.0 38 .............................. GCGGCTTTGTGTATCAAGCTAATTTCGAGGTCTTAAAT 1804 30 100.0 36 .............................. TCCGCAACATTATGCGGCTCTACAAAATGAAGCTCG 1870 30 100.0 37 .............................. TTGGTGGAATTCTGGGAGGTATAGTTGGTGGATTGGT 1937 30 100.0 38 .............................. ATTCATAAATCTCGCTAGCATTGTCGATTATGTAACGG 2005 30 100.0 38 .............................. CTAAGTACCTTTCCCTAGAGGGTTACGCAGGTTCCCGC 2073 30 100.0 39 .............................. TGACTTTGAGGCCTTCGTTCACAACGAGTACTGGCGCTA 2142 30 100.0 37 .............................. TATAGGTATCGGAATTAAATGGGGACTACACGATCCA 2209 30 100.0 36 .............................. CCGTGAACATTTATCCTGTTGCGATCATTAAATTGC 2275 30 100.0 36 .............................. TTTTCTCAAATCTTCTTCTGTCTTAATGGTTTCAAG 2341 30 100.0 37 .............................. ACCAGATAGCTTGGGAATGCTGGCAGATTTGCCATGC 2408 30 100.0 36 .............................. CTTCTAGTGAGGTTAAATTTCTAAAACTCAAAGAAG 2474 30 100.0 36 .............................. GTCAATAAGGTCTGAGCCGACGTGTCGGAATCGCCC 2540 30 100.0 37 .............................. AGGAGCCGGAGGAATGGGCCTCCGACTCCCCGGAAAA 2607 30 100.0 37 .............................. TAGTGAGACCGGTGGCGATTTTGCGATGCAACTTATA 2674 30 100.0 35 .............................. TTGGGGGCCTCATTGGTGGAATTTTGGGCGGTATA 2739 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 16 30 100.0 37 GTTTCGAGCCTACCTATAAGGAATGGAAAC # Left flank : AAAAAAACTCCGTCGAGATTCCTGTTGAAATTTAGATTGAAAAAGAGATAGAATTAGATAAAAAAGTTCACACCGGCTAAGGGACGCGCTGGTGTTCGTAATTTTGGTTTATGATGCCGGGGCAAAACGGGTGCAGAAATTCCACAAAATCTGTCGGAAGTATTTAAACTGGGTTCAGCTTTCGGTGTTTGAAGGGGAGCTTACCGAAGTTCAGCTCGAGCGTCTGCTGGCCGAGCTACGGGAAGTGATGAATTCCGAGGAAGATTCGGTGATCGTTTATGGCTTTCGCACCAGGCGGTATTTCGTGCGCAGGGTGATCGGACGTAAGAAGGACGACCCCGACCGACGTTTCTGGTGATCTCTTTGACTTCTGGCCGCCGGACCACTCAGGATTTTTACACTACCGAAGGTCCAGCGGCCAAAAAAAGGCTTTTACCTCTTCCCATGAATTCTCAAAATTGGTATAAATCATTGTAAAGATTGCTCCCCCTTTTACAGGG # Right flank : TATTTTGAGCAGGCCTGTAAGACCTGTAAACGCAACCTGTTTCGAGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCGAGCCTACCTATAAGGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 26-187 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWLG01000026.1 Thermosulfurimonas dismutans strain S95 contig00026, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 26 30 100.0 36 .............................. ACAATAAAGTGGTCGTGAACATATTTCCAAATTACG 92 30 100.0 36 .............................. CTTTCTCAGGTCTTCTTCTGTCTTTATAGTTTCAAG 158 30 96.7 0 .........................A.... | ========== ====== ====== ====== ============================== ==================================== ================== 3 30 98.9 36 GTTTCGAGCCTACCTATAAGGAATGGAAAC # Left flank : ATTGGTGGCATAGTAGGGGGGATAAG # Right flank : CGGGAAGGGGAACCTGATTGAGCGGGTGGAGATCGAGTGGACACAACGGGCTGCCGAATTCCGGCAAGGGCTTATTGCCCTGGAGTTTAAGCTAGCCAAACAATTGGCAGGCCGGAGGCTCACCTTGGAGCAGGTTCGGGAGATCTTGCGGAAAGAAATCTTTGAGATCCTGCGGTCCTATGCCCGGAAAGGGGCCTATACGCCCAAGGTGGATGAGAGGTGGAGCCTGGAGGAGTTTGAGGCTCCCTACTTCAAGTTTTTGCAGGCTCTGGAGAAAACGAACTGTCCTTTGAGCAAGATCAAAGTAAAGCTTGAGTGTCCTTCTCAGAACCGGAGAGCCAAAAAGGGCGAAAAATAGGTTCTATTTGTGGCAAAATGGAAACTATGGACCTTCTCATGGGCTGGAAGGAGATAGCCAGGATTTTAAGGGTTTCGGAGAGGACGCTTAAGGATAATTGGGAGCGGTGGGGCTTACCCATCAAGTTTTTGCCCACCAAGCG # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCGAGCCTACCTATAAGGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 21-1181 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWLG01000035.1 Thermosulfurimonas dismutans strain S95 contig00035, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 21 30 100.0 37 .............................. GGCTTCTAGCAGTTGGACCGAAATTGACCGTAAAGGT 88 30 100.0 37 .............................. TCTTGGCGCTCCCCGTCCTTGGTCCGGAACTCGCTCG 155 30 100.0 36 .............................. CGGTCCCGTCGGTAATCGTTACCGTCCCGGGAATCA 221 30 100.0 36 .............................. AATTCTTGGTAATACTTACTCCACGGTCTTTTCTTG 287 30 100.0 37 .............................. TTATCCTGGCTCGCTCTGATTTTCTGGAGTTCTCCTT 354 30 100.0 36 .............................. AGAACGAGCAGGGGCAGCGAGAAATTGAGATTGCGC 420 30 100.0 36 .............................. TTAGCTCCTCAGCCAGCCGGTCGTCAAGGCCGAGCT 486 30 100.0 37 .............................. AAGCTGGGTATTTAAAAATGCCTGAAGAGATTTCTAG 553 30 100.0 36 .............................. AAATTGTCGGAACAAATGATCCAAAACATTTGAAAG 619 30 100.0 36 .............................. TATCGCCTCAACTCTAGTCCCGGCCCTGAGGTGCTT 685 30 100.0 37 .............................. TTGCAACAATTCAATAATCCTGGACAAAATGTCATTA 752 30 100.0 37 .............................. AAAAAAGAATTGTCGGAGGGGTGGCCGTCAAGGGCGG 819 30 100.0 38 .............................. CAGTTCTCGAATATATTCTCTCGTGGAGTATGAGATTG 887 30 100.0 36 .............................. TGTTAAACCCTGGCAATGGTTCTCCTTCATAGTGCA 953 30 100.0 37 .............................. CTATGTTATCTTCAAAGTTGTAGAGCGACGCTAATAG 1020 30 100.0 35 .............................. ACGATCCATTTTGAGGCCCCCTTTTTGGAAGATGA 1085 30 100.0 37 .............................. GGTTGCGTTTACAGGTCTTACAGGCCTGCTCAAAATA 1152 30 96.7 0 ..........T................... | ========== ====== ====== ====== ============================== ====================================== ================== 18 30 99.8 37 GTTTCCATTCCTTATAGGTAGGCTCGAAAC # Left flank : GGCCGGCCTGGAGGCCGTAAG # Right flank : | # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTCCTTATAGGTAGGCTCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.80,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [8.3-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 26-591 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWLG01000053.1 Thermosulfurimonas dismutans strain S95 contig00053, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 26 30 100.0 37 .............................. TCATGCCTCCTCCCACAAAGCTCGAAAAGTAGATAGA 93 30 100.0 37 .............................. GATCTAGCACGGATACTGGGTCTAGCACGGATACCGG 160 30 100.0 38 .............................. TTACATATAGCACGGCTGAAATTGAGCAATTACGTCAG 228 30 100.0 37 .............................. CTAAAAGTTCTTACAATATTTCTCTTCCGGACATAAA 295 30 100.0 37 .............................. TCATAATAGTCGCGGGGCGGCGTTTTTTTCGTCTCAT 362 30 100.0 39 .............................. GCAACACGCTTGTTATATACAAAGCGACCGGGTTGAAAG 431 30 100.0 35 .............................. GGACGAAATCGAAAAGCCGGCCTCTTTTGTAAAAA 496 30 100.0 36 .............................. CCAATTCTGGCAAAAGATCGCGCAATTTTTCATATT 562 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 9 30 100.0 37 GTTTCGAGCCTACCTATAAGGAATGGAAAC # Left flank : GGCCGGCCCGGAAGTAGTCGAACGCG # Right flank : TTGGGGGCCTCATTGGTGGGGGAGTGTCCACCCAATTGTGGAAATTGTAAAATGACCAAATCACAAAAAGGAGGGTGGACACCATGAGCAAAATTCAGAAGGCCCCTAAGCCACAGGAAGTACAAGCCACCATCAAAGAGTTTACTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCGAGCCTACCTATAAGGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [11.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 1 74643-74298 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWLG01000007.1 Thermosulfurimonas dismutans strain S95 contig00007, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 74642 37 100.0 41 ..................................... TCAGTAAGAACATAGCCAGGCTTACCTTCAGCTATAGGAGT 74564 37 97.3 42 ..........C.......................... TGGTTTCACCTCCTAAACGGTTTTGACATCAAAGCGGTAAGA 74485 37 100.0 37 ..................................... CCTAGAGCCGTGGAAACATCTAGAAATTCAAGGGCAA 74411 37 97.3 40 ..................T.................. ATACGAGCGAATTGCTGAGCGACTTTCATATCCTCGATGT 74334 37 97.3 0 A.................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 5 37 98.4 40 GTGAGAAAACTTTCCCTCACTAAGAAGGGATTGCGAC # Left flank : CTTTAGAGGACCGTCTCACCCTTCACTATAGTCGTCCTGCAGAATTGGGACGGGTTTACCTTCACCTGCGCGAGAGGCTCCGGTATGTGGAACACGAGCTTCGGAGACATTTCCGAAGAAATCCCCAAAGACTTCGGGTCGGAGATTATATTTTCTCCTTAGAGGGCGAGGAAATTATCGTTCGCCCTCGATCCGCATAGCCCCTTTACACTTCCGAAAATTTTTGATTTTAAAGGATAAGAGGATTCAGCTCTTTGAAAAACTGGCGATAAGGGTGCCCTTTTTGGTGAGGGATTCATAAGCCTGCTTGATATCGTCATTTTTAGGGTGCTTTTAAGTAAAGGATTGCCAGTATCTATTTTGGACGATTTTATGGGCTGTTATGTTGTGGCTCCCCCAGCGAAGATATCGGGGGAGCCACTTTTTTAAACATTCATTTTCAATCCTTATCATTTACGGCTTTAAAAGATACTGTAGATTCTTAAGTTATAAAATATGCA # Right flank : CTTTAATGATGATGGGGGATAAAAATGATCCTTTATCTCACCGAACAGGGGTTAAAGGTCTCGCGGGAAGGAGAAAGGCTCAAGCTGGAAATCGGTCAGAAGAAAAAGGAGGTCAGGCTAGCGGAAGTGGATCAGGTGGTGGTCTTCGGGAGGGTAAACTTTACTGCCCCGGCCCTCCAGGCCTTGCTCAAACGCGGAATAGAGGTTCACTTCCTCACCCTTTCCGGAAAATATCTCGACAAACTTTCGCCTCCGCTCGGGAAGAACATAGAACTGCGGTTAAGCCAGTTTCAGAGCTTCCATAACCTGTGGAAACGGCTCGAACTGGCCAGGGCTTTCGTACACGGAAAAATTCACAATCAGCGGGAATACCTGGCCCGTCAGAAACGAAGGCTAGGGGAAACGGCCCTGGAAGGTCCGATATTTCACCTTAAACGCGTTCTTACCGAACTTGAAAAGGCCAAAGATATTGACGAGATCTTGGGTCTCGAGGGCATGGC # Questionable array : NO Score: 2.90 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGAAAACTTTCCCTCACTAAGAAGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA //