Array 1 423-66 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJKF010000025.1 Megamonas funiformis strain An776 An776_contig-115_24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 422 30 76.7 34 C.....AC....TA......A..G...... TTGAACAAATTGATTTAGACATTAATGTAAGAAT 358 30 100.0 36 .............................. AAGATATATGTTTTCGATAAAGAATATAGAGAAAGA 292 30 90.0 36 .............A......A..G...... GGCTCAGAAGGGATTAAACAATTTTATATCAATCAT 226 30 100.0 35 .............................. GGAATTTGAGTGTTTAATAGGAAATACTTTGCTTA 161 30 100.0 36 .............................. TTTTAAACAAATGTATAATGTAGAAAAAATAAATAG 95 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 6 30 94.5 36 GTATTCGTACAGCTTCTGTTGATATTTATC # Left flank : ACCTTGTTTTTCTAAAGTTTGTGCTATTTCACTAAGAGCTGTATATGTACAACCTTTTTCGCGTCTACTACCATTTAATAATAAAACTTTCATTGAAATTCAACCTTTCTTACTAGAAATAAATCCTATCTAAATTATATGCTTATAAGCAAAAATAATCAATAATACCTCAAAAATGCAATTTCATTTATTAAATTAATATAAGTTTATAATTTATAAAAAACAAAAAAGGCTTTACAGAAAATCTGTAAAGCCTATAATTTCAAATGGTGCGGAAGACAGGAACATATTTATACATCAACCTCTACAGCCTTATTTACTCAAAAAGGGGCAAAAAGGGGGCAAACTACTTCACATTAACCACGATTAAACAAAAATTAGCTCTATTCTATATTGAATAGAGCTTTTAATTATTTTCACTGCTAACAGAAAGATTTATTTATATTATCCTTTTTCCGTTTTTTCGGAATGTGATATATACTCAACAACAAAATATTTTT # Right flank : CACCAATAACCCTAAGATTGTTCCCCAGTTCGACTCTGTATTCGTACCTGTCTCTTATACACATCT # Questionable array : NO Score: 2.98 # Score Detail : 1:0, 2:0, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCGTACAGCTTCTGTTGATATTTATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.50,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 1 53073-53498 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJKF010000004.1 Megamonas funiformis strain An776 An776_contig-115_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 53073 31 100.0 35 ............................... TAGGTATTCGGTTGAATAAAATCTGTTCTATATCT 53139 31 100.0 35 ............................... GATAACGGCTGCTAAATTTCCCGCATTGGCACGTT 53205 31 96.8 36 ..............................A TTATTTACATCGACCAAACTATTTTCCCATTTTTTA 53272 31 100.0 34 ............................... CTTTATTCAATGGAACAACTGTGATTAGTAAACA 53337 31 100.0 35 ............................... TCCAAATCTTGTCAAATACTTCATGGCATTTCTTA 53403 31 100.0 34 ............................... CATATTCCCTTTATCTTTTCTTTAATTATATTAT 53468 31 87.1 0 ...............T........A....AA | ========== ====== ====== ====== =============================== ==================================== ================== 7 31 97.7 35 GATAAATATCAACAGATACTGTACGAAAACT # Left flank : GCTGTCAGACCTTTAAATTCTCTAGTATTTATATTTGGACAAACTTCATAAAAAAATTCTGCCATATCCTCATCAATAGTTCTAATGGTCAAAGTATATATCTTGCCTTTTTTATAGATTTTATCTTTTTCTAATGGCGATAATAAATCATAGCAATAATTTTTATATGTATTTGTATTATGTAATTTTCCTAAATTTTCTTTTGCAAATAAGCTTTTATCAATAAATCTAGTCAACATAATTTGCACATCTTGTACCATGATATCCTTTAATAAATATAATTTTATGCGTATCTGATAAACCTTCATCAAAATGCCCCTTTCTTTGAATTTACCAAGTGATATATTCATCTTTATACAAAAATGCTGATATATCAATAATTATAACAAAAATTCGTCATTAAATTCTCAAAATCCTTTTCGTTGGTAAAAAATCCCTAAACCTTGATAAAATCACTATTTTCATCTATAATATATTTTATAAACCTTAATCTTTAAAGG # Right flank : AGACTTGTTATAGTTATTTTTCTATAACAAGCCTTTTTATTTTGCTTTAATTTAATTTTATCTGTATTGCTCCCATGCCTAGATGAGTATTTACTCCTATTGATGTATACTGAGAAAACTCTGCCAGCATTAAGATTATTTTATTTGCCATTATATTATTTTTTAAACTAAACCTACATTTTCCTTGAAATGTAGGTCTTTTTTTGCCATTTATCAGCTGTGGTCTTAAAACGACTTCATAATCATCTAGCTGTATTTCTTGTGCTAGATTTTCAATTAAATCTTGTTCATACAATTTTTCATCAATGGCAAATAAATTCCAGATAGCAACTAAATTCACTATTATATCATGCGATTGACAAATTATTTTATCTTCTTCGCCAAACAATAAAGTCGGTGTCAAAAAATTAAATTCAATATAGCTACTTTTCAATCTATGTGTAAAATATTTTGTTACTAATTGCTTATATGTAGCACTATGAATATAACTTTTCTTCTCT # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAAATATCAACAGATACTGTACGAAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.50,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 67651-67356 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJKF010000001.1 Megamonas funiformis strain An776 An776_contig-115_0, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 67650 30 100.0 37 .............................. GCCTCAAATTGTATGAAAATTTTAAAAAATAGGTTTT 67583 30 100.0 36 .............................. GATATCAATCAAATCGTTATCAAAATACCTAAGGTA 67517 30 100.0 36 .............................. TTTTATTAAAAACGTTTGTAAGAAGCTTGTGTTTTT 67451 30 100.0 36 .............................. CACTCCTTTTGCATACAATATTGCTTGTTCCTGGAA 67385 30 83.3 0 .................A.....TA..G.A | ========== ====== ====== ====== ============================== ===================================== ================== 5 30 96.7 36 GATAAATATCAACAGATGCTGTACGAATAC # Left flank : CTTCCAAACATCCGCTCTGTAGGTGTTATGGGTGATAGCCGTACTTATTGCCACACTGTAGCACTTCGTGCTGTTACAAGTAGCGATGCTATGACTTCTGAATGGGCAAGAATTCCATATGAAGTATTAGATACAGTTTCTCGTAGAATTGTAAACGAAGTACCTGGTGTAAACAGAATAGTTTATGATATAACTTCTAAACCACCAGCTACAATTGAATGGGAATAAGATAAAAAATATAGCTAAGTCCTTTATTTTAGGACTTAGCTTTTTTTATCATAATTTATTGTTATAGTTTCAGACATATATCTTATGCTCTTTAATCTTATTATATCTAAAATTTACCAACCTAAAATTTATAAAATCTTCACAAAGCTTGATTTTATTGACCTACTCAAATCTAATATATTATCTATCATTTACTGGTAAAAATTATAAAAGTCTTGCAATATCAATAGTTTATAACTATAATGTAATTAATAAATCCTAATAACGTTAGG # Right flank : AATTGAATATGTATTATTTGGAGTATGGCGGTTATTAATAAAAATACCGCCATATTTTGATATATAACTATTAGTCAAAATTAATTGACATCTTGTTATATTTATATATGGCGGTTAAAATTAACGTACTATAAACGTACTATAAAAATAAATAAACAAACAAATTTAAGTTAATTTATATAAAATATCCTATATAATGCAGGCAAAAAAACAATAAAAAATACTAGAAAAAATATATTGCATTGAATGGGAATAAGATAAAAAATATAGCTAAGTCCTTATTTGAGGACTTAGCTTTTTTATTTAATAAGATACTATTTTATTTAAAATAATGTTTCTTTAAAATTTCATCTGCTACTTGTACACAATCTTCACAAGATAAAATTTTATTCTTCTCCATATTTTTCAAATCTCTACAATATATTGAACCACATTTTTCTTTAAATAATTTTGCTACTTCCTGAAATTTATTATATGTATCTTGTTTACTTTTCAATGGA # Questionable array : NO Score: 2.90 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAAATATCAACAGATGCTGTACGAATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.30,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 2 112346-113893 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJKF010000001.1 Megamonas funiformis strain An776 An776_contig-115_0, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 112346 30 100.0 36 .............................. GTTTTTAGGCTATAGGGAGATATAGATAGGAAAATG 112412 30 100.0 36 .............................. ATATATACTAAATAATGGTAATAAAAAAAATATAAA 112478 30 100.0 36 .............................. TCTGAATTTATATCTAAATTAGAGAATAAACTCTAA 112544 30 100.0 39 .............................. CTTCCATCAAGTGGGCTTGTAATAAGATAGGTTTTAGCC 112613 30 100.0 36 .............................. TAATTATTATAGCATATATCGGACTTAGTTTATCCG 112679 30 100.0 35 .............................. TCTTCAAAATAATATTTTCTATCTGCATTTTTCTT 112744 30 100.0 36 .............................. AAGGAAAATAACATAAAGTTAATAAAAAAACTTGAC 112810 30 100.0 37 .............................. TTAGATAAAAATAGTGAAGATATTGTAGTTATGACTA 112877 30 100.0 36 .............................. AAATAAAGGTGGAAAAAGCAAAGCTAAAACTGCTGC 112943 30 100.0 35 .............................. TTTGCAAATTGGTTAAACCTGCATTAAGTGCAGGC 113008 30 100.0 36 .............................. ACTACTTCTTCCGCGCCATTGGCATACTTGACTACA 113074 30 100.0 36 .............................. CGTAATGGAATGGATTGTTCCCCAATAGAAATAGAA 113140 30 100.0 37 .............................. AACCAGCTATATTCGTCGCATTCAGCTACTTGTACTT 113207 30 100.0 36 .............................. TCTATAACGTTTTCAGCTCTACCTAATACAAAATAA 113273 30 100.0 36 .............................. ATGTAGGGGAAACAACCGAAGGGCTAGCAAATCCAT 113339 30 100.0 36 .............................. TTTTGTTTTTGGCGAACATATTTATAAAATAAATCT 113405 30 100.0 35 .............................. TTTATATTTGAGCCATCTTTAATAATAGCCATACA 113470 30 100.0 36 .............................. TACAAAGTACCTATAAATTTTAATCCGTTCCAAACT 113536 30 100.0 35 .............................. ATTAATACATTAGCTCCGTTCCCGAAAGATGAGGA 113601 30 96.7 36 ................A............. TGGGTGATTAGTCTATGGACTAGGCACTTTTTTTAT 113667 30 96.7 36 ................A............. AGATGGTGGTTATAGTTGTTATAGTACAAGCACCAC 113733 30 96.7 36 ................A............. TAGCCGCCGGACGAAAGGAACACGCAAAATGCGTTT 113799 30 96.7 36 ................A............. TCATTAACTACCTTCCCTACAAATCTTTCTAAATCT 113865 29 93.3 0 .....................-....A... | ========== ====== ====== ====== ============================== ======================================= ================== 24 30 99.2 36 GATTAACAGTAACAAAGGTTGTTTTTGAAT # Left flank : TATTCATTGAAAGCAGGGTATTGATGAATGAGTAAAAAAATAAATTATAATTATGCTTTTTTATTTTATGATGTAAATGAAAAGAGAGTACAGAAAGTATTTAAGATATGTAAAAAATATTTATCGCATTTTCAAAACTCAGTATTTAGAGGAGAAATAACACCATCAAAATTAATGAAATTAAAGTTAGAGTTACAAAAAATTATAGTAGATGAAGAAGATTTTGTTTGTATTATAAAATTAATGAATGATAATGTATTTGGTGAAGATATTTTAGGTAAAAAAGATATAGAAAATGGAGAAAGTTTGATTTTATAAACTAAATTTTACCAGGCATAAAAATAAGTATATGTATATAAACCCTTATAAATACAAGAGTTATAGCAAATTTCTTTCATTAAAGAAATAAATGCATTATGCCTGGTAATTTTTACTTAGAATGTTGAAATATCAAGGTTTTTGAGCTATATTATAAAATATAAAGTCTTTAAAAACGAGGG # Right flank : TGAACTTAGCAATAGAAATATATAGATATTTTAAAATAAAAAATGATAATAAATTATTATGAATAAATATATAAGCTATTAATAATTTTTATAAACTAAAAGGATTATTTTTGTTATAATATACAAACTATGACTTTGGAGGTATATATTTGACAAAAATAAAAATATTATTGATTACTATTTGTATTATGGTGATGTCTACTATGACTGTCAGTGCAAATGCGTTTGATGATTTGAAAGATGACTTAAAAGATGATCAAGCATTGAAATTAGCAGCGGGATATCTAGTTGCTAATGAGGTGCAACGATTAACGAAAATAAGTGCATTGGAATTATTCTTAGCTTCAACAGCAGTTAATTATATGGACGATAAAGATATAACAAATGCAGTAGTAAAATCTTTAGTATATCAGATAAAATTTTAAATAAAAAATGCATTAGAATTTTTTCTAGTGCATTTTTTTATATAATTATATTGTGAGGTGAATTTTATGGAATTT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAACAGTAACAAAGGTTGTTTTTGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [75.0-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 15294-14673 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJKF010000040.1 Megamonas funiformis strain An776 An776_contig-115_39, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 15293 35 100.0 37 ................................... TAATTTTTTGTTCATTATTATTACCTCTTCTTTTATC 15221 35 100.0 39 ................................... TTTCTTAGATAAAATTTTTGTCTTTTAGGTTTACTATAA 15147 35 100.0 37 ................................... GTATCTATAGTTATTTATAAAAAAAGTAGTAAATGCA 15075 35 100.0 36 ................................... TATAAAATTCAGCAAAATTGAAATTAAACTTATCTA 15004 35 100.0 40 ................................... TCAAACACATTTACATAATTATCTTTTTCATATTCAGTTG 14929 35 100.0 38 ................................... ATTTCTTATTCATTGTTTTTACCTCTTATCTTTCTTTT 14856 35 100.0 39 ................................... ATATAACATATTCCATGCTAAAGTTGCTAATACAGCTTG 14782 35 100.0 40 ................................... ATATAGTTCCAAAATTCTCCATTGAATCTTTCTGTAATCT 14707 35 91.4 0 .................C..T.............T | ========== ====== ====== ====== =================================== ======================================== ================== 9 35 99.0 38 GTTTAAAACTAACCCCGTTTATAGGGGACGGAAAC # Left flank : ACTCAATCAATCTAAATCCTGTTCTCAACCGCAAAGTGCATTTTCAGCCCAATAACGACGCGGGTTCCAGAGCACAG # Right flank : TAGCTAAAAAAGACTCTAGTCAAATGACTAGAGTCTTTTTTCTGTTTAATTATTTTATTAGCTATTTATAATTCTTATTCGCTCTTCTCTCCTAATCTACACCATACGGCAAAATGTTCACAATTATTAATTACTACATTATAATCTTCTTCAAATAAACGACTTCTCGCCCTATCAACGATTTCATCTTTAGTATATACTGCATCATACTCTACACGATAAATATCTGAGCCGTCAGCAAAATCTTCTAAGCTGTTAATTCTAATAGAGCCTTCATTATATTCGTATACCCATCCATCTCCATCATATATACCATGATGACTATATACACTACGATGAACACCTACATGATCGCCTTTTTTTAATATATGTTTTGCTTCATCTACACTCATTTTGCGTTTAAAAAATCTTAATATACTAGTTGCCTCATTCACATTTTCTAATGAATCTCCCACATTATTTACAACTTCTACTGCTTTTCCTATTTTTTCCAATCCTAC # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAAACTAACCCCGTTTATAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.00,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 9541-7993 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJKF010000006.1 Megamonas funiformis strain An776 An776_contig-115_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 9540 30 100.0 36 .............................. TTATCAAATATGTTCCCAATTATTTTTATTTCATTA 9474 30 100.0 37 .............................. AGAAAATGGAATTGGAGGATAACAAAAACAAAATTTA 9407 30 100.0 35 .............................. GCGTTGAATATGGATTTCCTTATGTAACACAACAG 9342 30 100.0 36 .............................. CATCTATTTCTATGATGAATTATCCTACTTCATAAC 9276 30 100.0 36 .............................. CTGTGATTGTGGAACAGTTAAGGAATACGATAAATA 9210 30 100.0 38 .............................. TTTCCTAAAGTTTGGGAAACCCATATAATTTGTTCCGG 9142 30 100.0 36 .............................. TTTAGCTCATGGCAGTGAAACAACAGCACAAGCCTA 9076 30 100.0 35 .............................. CTTTTATAAGTGGTATGTAAAATACAAATGAAAAA 9011 30 100.0 35 .............................. TGCCCATTTGTTTAAGTTTTCGCATTACTTGTGCA 8946 30 100.0 37 .............................. GTATTTAGCTATTTTAGCATCTGTTATGGCTTTTATT 8879 30 100.0 36 .............................. GAGCGATTGCAGTACAGTAACAGCGGAAACTACAGA 8813 30 100.0 37 .............................. GACAAGTGTAAATATATATCCTGCAATCGGCGTACCG 8746 30 100.0 35 .............................. GCGTTTGTGGCATGTGTTGCATTATCTGCTGTATT 8681 30 100.0 37 .............................. AAGTTCAAAAGTATATTTAACAATCCAACGACTTCAA 8614 30 100.0 36 .............................. ATCATTAGAAATAAGTAAATCTAATTTAGCTAATAT 8548 30 100.0 36 .............................. CAGAAAACAAACAGGACTAGAACCTAGTGTAACAGA 8482 30 100.0 36 .............................. CATTGACAAAGGACTTTGTTATTTCCTAGCTCTTTT 8416 30 100.0 36 .............................. TCATTCTCGTACACGCATTGGGCTTGAATATCTACC 8350 30 100.0 35 .............................. TACATATAATCTGTCGCCACTTCTTACCAACATAC 8285 30 100.0 37 .............................. AAGTATTTTTTTTCTGCATCTTTTCGAGCTTTAATGG 8218 30 100.0 36 .............................. TTTTTAGATGCTAACAGAAGTTCTTTTTCTTTGGAA 8152 30 100.0 36 .............................. TTTTTCGGCAGGCGTAAGCTTATTGTCTGGCTTAGG 8086 30 100.0 35 .............................. GCGATTACTGATGAAAAGATATATACTTCTGTATT 8021 29 76.7 0 ...............TT..A-.....CT.A | ========== ====== ====== ====== ============================== ====================================== ================== 24 30 99.0 36 ATTTAACTTTAACAAGAGTTGTATTTGAAT # Left flank : AAATACTCATCATAATTCTTTAGATTTATTCTTCATATCACCAAAATATCATGGAGACGGCTTGGGTCTTGCAACATGGAAAACCATTGAGAAAAAATATCCCGATACAATCACATGGAGAACAATTACGCCATATTTTGAACAAAGAAATATACATTTTTATATAAATAAATGCGGATTTCATATAATAGAATTTTTCAATAAATATCACAAAGAAAAAAATATGCCCAATCATATAAATGATAAACCCAATCCATGTATAGATAATTATTTTCTCTTTGAAAAAAAGATGAAATAATCCAAAGAAATGCTACTTGCCAAAGATATTTTATCTCTAATTTTACCAGTTAAATTCTTAAAAAAGCTTTTCATTACCTGAAAAATAAGGCTTTTTATAAAATCTTTAAAATTACCATTATCGCTGGTAAAAAATATCAATATCCTTGTATATCAATACTTTTAATAGTATAATGAAAATCACAAATACTGATTTTTCTAGC # Right flank : AATAACTTTTCCACTATTTGATAAATATGTAGATAATTATAAAAATAAAAACTCATGGATTAAAATACCCATGAGTTTTTATTTTGCTTTATTCTTTATTAGCTATACCTAATTTACCAAAAACATAAAACGATAAGCTGAGAATCATGCCACAGACAACAGCAAGGCCCATACCTTTTAATTGTACAGGACCAATATTTACAGCAGCTCCACTAAGACCACTTATCATAGTTACGGCAGTAAGTATCATATTTTTCGTACTAGTATAATCAACTTTTTTCTCTATAAGCATACGTATACCAGAACAAGCGATAACACCAAATAACAATACAGAAATACCGCCCATTACTGGTACTGGAATAGCATGAATAATCGCAGCAATTTTACCAATAAAAGAGAAAAGAATAGCAAAAACAGCAGCTCCACCGATTACCCACACACTATAAACACGAGTAATAGCCATAACGCCCATATTTTCGCCATAAGTAGTATTAGGAGTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAACTTTAACAAGAGTTGTATTTGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 16070-19472 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJKF010000007.1 Megamonas funiformis strain An776 An776_contig-115_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 16070 30 100.0 36 .............................. TGATTTTTTATCTATCAAAACTTTACAACAAAGAAA 16136 30 100.0 37 .............................. GGAACTCTTTAAATTTATAACAGATATAGAGTAAATT 16203 30 100.0 36 .............................. TGGTGATAGATTAACTTTAGTAAATCAATATGTATT 16269 30 100.0 39 .............................. GCCGGTCGGAGCAGTCGGCACAGGCGAGCTTGTAGTACT 16338 30 100.0 36 .............................. TATTCTATGATGAAATCTATTAAATAAGTAATAAAT 16404 30 100.0 36 .............................. TGGTGATGTGAATTATTTAGCAAAATTATTAGGTGT 16470 30 100.0 36 .............................. TTTTGGTAGGATTGTAAAAATTTCTTACTATTGTTA 16536 30 100.0 36 .............................. GCTAAAAGTTGCTCTTTATTTATTTTTAGTTTTTCA 16602 30 100.0 36 .............................. GAGCTGTATTTCGGTACGATTATCTGTCCCGGCACA 16668 30 100.0 36 .............................. TGGTTATACAAAAGACAACAAAGGCCGTCTTTTATG 16734 30 100.0 35 .............................. GATATACTTGATGTATCTATTGATGAATTAATAAG 16799 30 100.0 36 .............................. TAGGCATATTCAATCCTTACAAAATCGATTTTTTTC 16865 30 100.0 35 .............................. TCTCCATTGGCACATTGGACAAAGTCGAACACGGC 16930 30 100.0 36 .............................. TCCGTAAATTCGGGATACTCATACAGCATTTTTAAT 16996 30 100.0 37 .............................. GACAAGTGTAAATATATATCCTGCAATCGGCGTACCG 17063 30 100.0 36 .............................. TGTGTTTTGGTGCCGTTTTTGGTTAAAATTGTCTTT 17129 30 100.0 36 .............................. CGCTCACTCAAAAAAATTGCAACGGCTCGGAGCTGG 17195 30 100.0 37 .............................. TTTTGTGGAATTACCATATTACTAATACCAATACAAC 17262 30 100.0 37 .............................. CTGGTAATAACAAAGGCATTTAAATTACTGTTATAAA 17329 30 100.0 34 .............................. TAATTAGCTATAGCGTCTCGTGATTTTCCACACA 17393 30 100.0 36 .............................. TTGCAATTGGGTAAAGCCTCGATATTGTTATATGGA 17459 30 100.0 36 .............................. AATTTCCCTAAAGAAATTAAAGTATTACTGATACCA 17525 30 100.0 36 .............................. TAAAGGTGTATATAAGTCCGCAGGTGTTGGTGCTGG 17591 30 100.0 37 .............................. GCCTGTATGTTGTTTTTACCACCTAATTTAGCTTTCG 17658 30 100.0 36 .............................. TTCAAAAAAGCTTGATAATGCACTATCTCCGCCATT 17724 30 100.0 36 .............................. TTGTCTCTTTGCTGAACAAAATATCTAATACGATTT 17790 30 100.0 36 .............................. GCTTCTAGTTTTACTTGTTGATATTCTTCTAGCTCC 17856 30 100.0 36 .............................. AAAAATATCCGAATATCAATTTCAAAGAGGTGTAAA 17922 30 100.0 35 .............................. TATCCCAAAGCTCTTTTTAATAAGGCGTTTTCTAC 17987 30 100.0 35 .............................. ACATCAAGCACGGCATTCCTTATTCTGTTTGTTAA 18052 30 100.0 37 .............................. TGTATTGGAAATGTATCAATTCGTTAAAATTTATTAA 18119 30 100.0 35 .............................. GCCTGCACTTAATGCAGGTTTAACCAATTTGCAAA 18184 30 100.0 37 .............................. AAGACCGCCAAGAGGCAGACAGCCCAACTATTAGAGA 18251 30 100.0 37 .............................. TCTTTACTATTAAAATATATAGCGTTTGCTTCGTCTA 18318 30 100.0 38 .............................. CAGTCCCAATAATAAATTTGTGGCTCTAGCAATTCCAC 18386 30 100.0 36 .............................. TTTTTTTATTCATGTCATTTATATATTTTCGACGCT 18452 30 100.0 36 .............................. AAGCAGCAGCAGTTTTAGCTTTGCTTTTTCCACCTT 18518 30 100.0 36 .............................. CTGATATAGTATCAGACGTGCAGCGTAAAAAAGATT 18584 30 100.0 36 .............................. AGTTGGTATGAGCAAAAATATGTATTTGGTACTTAT 18650 30 100.0 34 .............................. AAAGGTTTAATCTACCTTTTAATATTTCAAAGTT 18714 30 100.0 36 .............................. TTCTGGCAGCAGATATTTAGGTGTTCATGTCTGTAA 18780 30 100.0 36 .............................. CGCTCACACAAAAAAATTGCAGTGGTTTAGAGCTGG 18846 30 100.0 37 .............................. GTTTCAAATCGGATATAAAGGCATGATTGACCTTGCA 18913 30 100.0 37 .............................. TGTTTTTTTATAATTAAATAATAGCATGCAACGCACA 18980 30 100.0 36 .............................. TTACCACAATCACAGTGGCAAAGAATTTTGTTTTCT 19046 30 100.0 36 .............................. ATAATGTTTTGGCATTCTCCAAGGATTGAGTCAAAT 19112 30 100.0 36 .............................. TTCATTTTTATTTTTTACTTTTTAGGTAGGGGGCTT 19178 30 100.0 35 .............................. TTAGTAAAAAAATTTTTTAAAATCGGAGATGATTA 19243 30 100.0 39 .............................. ACAGTTTTAGAAGAAATACCCATAATATTTTGTGGTTGT 19312 30 100.0 36 .............................. TTCTAGCAACATAATATTTATCATCCGTTACTTTTT 19378 30 100.0 35 .............................. AGCGTTAAATTTTGTATAGCAGTTTCTAAACTTTT 19443 30 83.3 0 .......................CAAA..A | ========== ====== ====== ====== ============================== ======================================= ================== 52 30 99.7 36 ATTTAACTTTAACAAGTGTTGTATTTGAAT # Left flank : TTATCCTCTTGCTAAAAAATATTTAAAAGGTTGCAGTGGTGTTATCACTTTTGTAATCAAAGGTGGCAAAGAAAACGCTGTTAAATTCATGGACTCCTTAAAATTAGCTTCTAATGAAGTTCATGTTGCTGATATTCGTACTTGTGTTCTTCACCCAGCAAGTGAAACACATCGTCAATTGACAGATGAACAACTCGAAGCTGCTGGTATCAATAGCGGTATGGTTCGTTTCTCTGTAGGTCTTGAAGATATCAATGATATTTTAGATGACTTAAAACAAGCTTTTGCTAATGTAAAATAATTATTTAAAGGCATTTGTGTAAACAAGTGCCTTTTTTATTTTCCCAGCCATTTTTTAGTTTAAAACCTAAAAGCCTTATAAATAAAGGATTTATTAAAAATCAAAAAATCAATCTCAATCGCTGGTAAAATTTTCATAAATATTGATATTTCAACCTTTATAAACTATAATTATTTATAAAAGTGTTAATTTTACTGGC # Right flank : AAGCTGTAACAAAGAGAATTTCTCAATGTTACAGCTTTTTTTATTAATTTTATAATGTGGAAAAGAAAAAGTTTATTAAAATTGGTACGGCTACTGAACATAATACACCATTAATTACAGATATAATAATAAATTCTTCACTACTATATTTTATAAGCATAGGCAAAGTGGAGTCTTCGCTTGTTGCACCTGCTGCTCCTATAGCTGCAAATGTATTTAAATATTTTACTAAAACTGGAATCATCATAAAAGCGATAAATTCTCTCATCAAACTACTCAAAAAAGCTATTGTGCCTATCTGTGCATTTGCAAGTGATTCAAGCATTACCCCAGATAAACTATACCAGCCCATAGATGCACCAATAGATAGACTATACACTAAATTCATATCAAAAATATAACTGCAAATCAATCCGCCAAAAACAGATCCAATAATTACACCTATAGGAATCAATAATATTGTCAAATTATAATTTTTTATCTTCTCGATTATTGATTCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAACTTTAACAAGTGTTGTATTTGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.10,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 79-476 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJKF010000066.1 Megamonas funiformis strain An776 An776_contig-115_65, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 79 36 100.0 35 .................................... GAAACAATATTTAAAGAAATCTACAGCTAATTTAT 150 36 100.0 40 .................................... ATCAAATACTATATTTTCACTTAAAACAGCATCAGCAGAA 226 36 100.0 37 .................................... GGAGGAAAAGGAAATTCTAATTTTAAATCATCTGATA 299 36 97.2 36 ...................................C ATATATATTCCTCCTAATATAATTATATATTTATTA 371 36 100.0 34 .................................... TGGCTTAATTACTATTTTAGTAGATTTAGTCTCC 441 36 91.7 0 .................C..T..............C | ========== ====== ====== ====== ==================================== ======================================== ================== 6 36 98.1 37 GTTTAAAACTAACCCCGTTTATAGGGGACGGAAACT # Left flank : ACTCAATCAATCTAAATCCTGTTCTCAACCGCAAAGTGCATTTTCAGCCCAATAACGACGCGGGTTCCAGAGCACAGGG # Right flank : CTCTGATTTAAAAATAAATTATTTTCTCTCAAAATAATTTAAGATTAGCCCAATATATAAATAAAGGCTATTATAAGAGGTGATTTATAATGTTTCTAGTAAGATTTGTACTATTCATTATAGCTATTGAAATACTTTTTCCTGACACTGAAGAGTAGTATGGAACGAATTTTTATAAAGCAATAACAATTTGAGTTTTAACTCTTTTTGTTATTGCTTTTTTCATTTTAAATATAAAAAAGCCCGATATCTTAGATATCGAGCCTTTGTTTTATCTCATTTATTTATCTGCTTTTAAAGAAAAATCAAACCAATCTTTTACTTTTACTTCTAAATCATTAAAATTCCCATTATCAACTATATACTTCACTCCTTTATAAATAAAAACTCCAAAACCTAAAACTACAATACTCGTTTCACTGTATTTTATAACATCTCCTATCAATTTATTATCTGATTCATGTATCGCAATTTCTTTCGCTGTTTGTGCATCAAATTTT # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAAACTAACCCCGTTTATAGGGGACGGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 60943-59858 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJKF010000008.1 Megamonas funiformis strain An776 An776_contig-115_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 60942 30 100.0 36 .............................. TGGTGATGAAGAAAAAGACCTTGTTATAACTGGTCA 60876 30 100.0 35 .............................. CAAGAAAAAGAAATAAAAAATAATCAAGAAATAAA 60811 30 100.0 36 .............................. TAGAAATCTTCCAGAATAAAAAGTTAAAGAGTGAAG 60745 30 100.0 36 .............................. GAACATGATTTTGACTATTTATGAGTTCTAATACTT 60679 30 100.0 37 .............................. GTGAACCTGTAATACTTTCTACTTTGAAAGTAAAAAA 60612 30 100.0 35 .............................. AAATTTTTGCACCCCCTGAAATTTTGGGCAGTAAA 60547 30 100.0 36 .............................. TAAAAAAATAGATAATAAACAATCACCACAAAACAT 60481 30 100.0 37 .............................. GGATTTATTAGCGCATAAATTACATGAGGTGGATTTA 60414 30 100.0 35 .............................. GTTGGTTTTATTTATGCAAATTAAAAATTATTACC 60349 30 100.0 36 .............................. TTTTCTCGCTCCCGCTTTTCGATTTCCTTCTGCAGT 60283 30 100.0 36 .............................. TTTACTTTTACTTCCATCTGCTGCACCTCATTTTTT 60217 30 100.0 36 .............................. GGATTTTCGCGCTCTTTTAAAATCGCATTCCATTTT 60151 30 100.0 36 .............................. TCACCTTGTAGCATATCTTTATCTTCTGCATCATAC 60085 30 100.0 36 .............................. TTCCCTCTTAGTTTTTTGTGGCTTCGATTTTTTTAG 60019 30 100.0 36 .............................. GCTAATTGTCTATCTAATCCAATACCTCTATCATTT 59953 30 93.3 36 .......A............A......... TCCATATAATAAACTTGTATTTCACGGATAGTTCTA 59887 30 93.3 0 ........................C.A... | ========== ====== ====== ====== ============================== ===================================== ================== 17 30 99.2 36 ATTTAACTTTAACAAGTGTTGTATTTGAAT # Left flank : AATATCTACCCAACAATTAAATAGTAATAGGTTATTATCTGAAAAACAAATCATTTATATGTTAAATGTATTCTATAATAAAAGAGTTGATGTTTCTTTCTATAATCAAATTATTGATTGCTTTATCTATAAAATTTATATTTACTCCGACAAAATATGTATTGTCTATAACCTGAATAATAGTGATAAAGACGTGACTTACTCTGATATTAACGAATTATATAAAAGTTCGCACCTTAACTCATGCGGTTCACCATATGATTTATAAAATTAAAGCAACTATCAATGATAGTTGCTTTTTGTTTTTTACTACTTGATAAAATTTTATTTACCATAAAATTACCAGCTAAAATTAAGAAAAACTCCTCTAAAGCTTGAAAATTAAACCTTTTTATAAAATCTCCAAAAATCCTATTATCGCTGGTAAAAAACAACTAAAATCCTTGTATATCAATACTTTTAATAGTATAATGAAAATCATAAAGATTGATTTTTCTAGC # Right flank : CTTATTATTAAAAAATTATAAAAGGCTTTTAATAGATTTTGTCTTCTATTAAAAGCCTTTTTTTATTTAGAATTATTTTTCAATTCCTCTAAAAATTTCTTATCATCTTTGCTTAATTCTACTTTTTCAAGTAAGTCTGGTCTATTTGTATACGTAACACGCAAAGATTCTTGTCGACGCCATTTTGCTATTTTAGCATGGTCTCCCGAAAGTAGTACATCAGGTACACTAAGACCTCTATACTCACGTGGTTTTGTATATTGTGGATATTCTAAAAGCCCATTATAAAAAGAATCTGTTGGCGCAGACTCTCCAGAGCCTAATACGCCTGGAAGCATTCTTGATACAGCATCAATTACCACCATAGCAGGAAGTTCTCCACCTGTTAATACATAATCGCCAATAGAAATTACTTCATCAGCTAAATTTTGTACCACACGATTATCAAAGCCTTCATAATGACCACAAATAAATATTAACTGATCAAAATTAGCAAGTTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAACTTTAACAAGTGTTGTATTTGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,-0.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 491-9 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJKF010000080.1 Megamonas funiformis strain An776 An776_contig-115_79, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =========================================== ================== 490 35 100.0 38 ................................... ATGTCAATAGCAATATCTTTATCTGCATTATCAATACT 417 35 100.0 39 ................................... CTTGCAGCAATACATTCAAATCGTATGGTATACGTAAAA 343 35 100.0 36 ................................... TTTAGATCGAATGAAATGGTTTCTGCTATGATGTAT 272 35 100.0 40 ................................... TCTAATTGATCTGATTTAGCTCTTAATCCTTTAATTCTAT 197 35 100.0 41 ................................... GTTCCAGCATATTTACCAATTGTAATTAAGCTATCTGTCAA 121 35 100.0 43 ................................... TCATCAATAACCTCTTTTGAATTATTTTTTATAATTACTGATA 43 35 77.1 0 ........................CT.T.TCTT.T | ========== ====== ====== ====== =================================== =========================================== ================== 7 35 96.7 40 GTTTAAAACTAACCCCGTTTATAGGGGACGGAAAC # Left flank : CAAAATATTGCAAATTTTTGCATTGTAAAATTCCTCAAAATAGGTTATAATATCTTTAGTTGATTGAGTTTTAATGAAGGATATCATATATTTTTTTACTAATATTTATACACGGCTTCATTTTTAAAACGTAAAAAATAGCCCTAAATGGCAAAAAAACGGCATCTCCGCCGCACCGCGTCATTACTGGGTTTGTGGCACTTTTTAAAGTGTATAACATCGCTCAATCAATCTAAATCCTGTTCTTAACCGCAAAGTGCATTTTCAGCCCAATAACGACGCGGGCTCCAGGGCACAG # Right flank : TACACATCT # Questionable array : NO Score: 3.10 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAAACTAACCCCGTTTATAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.00,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [8.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 828-1302 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJKF010000017.1 Megamonas funiformis strain An776 An776_contig-115_16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 828 35 100.0 34 ................................... TAAATTCTTCGTTCTTAATTAATTCAGGAGCATA 897 35 100.0 38 ................................... ATTAATTTTATTTTTATATTATTCTTTTATCACATATA 970 35 100.0 41 ................................... ATTTCAGTACTTCTAATATACTCATCTGGACCGTCTGGTCT 1046 35 100.0 40 ................................... AAAAAGAATCCATTATGCAAATTTAGCGAAGATTTGTTAA 1121 35 100.0 39 ................................... TAAATTTCATAAATAATAATCCTATAAATGGTCAACAAG 1195 35 100.0 38 ................................... TCTTATCCCTAATATTCCTAATAGTGTAACTAATATGA 1268 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ========================================= ================== 7 35 100.0 38 GTTTAAAACTAACCCCGCTTTTAGGGGACGGAAAC # Left flank : ATTTTTATTGACAAAAACTTTTATATCTTTTATCTTAATTTTATAAGTCTTACATTATATATATCTTGCTTAAGATTTTCATTTTGGCATTTATTTATCAAAATTTTTTACTATAAATATCTTTTATAAATAAATTCCTATATAATTAATATAAAATTTCAACTGAAAATTCTGATAATCTCAGTCGCAAAACTCTTATAACAAAATATTGCAAATTTTTGCATTGTAAAATTTATAAAAATAGGTTATAATATCTTTAGTTGATTGAGTTTTAATGAAGGATACTATATATTTTTTCACTAATATTTATACACGACTTCATTTTTAAAACGTAAAAAATAGCCCTAAATGGCAAAAAAACGGCATCTCCGCCGCACCGCGTCATTACTGGGTTTGTGGCACTTTTTAAAGTGTATAACATCACTCAATCTATCTAAATCTTGTTCTCAACCGCAAAGTGCATTTTCAGCCCAATAACGACGCGGGTTCCAGAACACAGG # Right flank : CTATTATAAAAGAGCAAAAGTATAATACTTTTGCTCTTTTGTTTAAACTATAAAATTAAGAGGTAATTTCTATGGCTTCTATATATATTAATGAAAATGGTGCTTATCTTCATAAAAAAGGCGGTCGTCTTATTATTGAGAAAGATGATATCATTATCAAAGAAATTCCTTTAGAATTAGTAGAAGATATCACTGTAGTTAACACTACGCAAATTTCTTCAGCTTTAATAACTGAATGTTTTGCTAAAGATATACCTATTTTTTGGATATCATCTTCTGGAAATCTTTTAGGTTCACTTTATTCTCCTAAAAATATTGATATCTTTAAACATAAACAACAGTTTGAGCTATTATCAGATAAAAATTTTTATTTTCAATTAGCGCAAAATACTGTATATGCCAAAATTCACAATCAAATAACTTTATTGCGTCGCTATAATCGCAATCTCAAAATAGATAAAGTAACTGAATTAATCAATTATATAAAGAATGTGCAAAAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAAACTAACCCCGCTTTTAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA //