Array 1 37852-37464 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDOV01000030.1 Photobacterium aphoticum strain DSM 25995 contig0030, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ===================================== ================== 37851 35 100.0 36 ................................... TTTTTTCTTCTCTCTTCTCTGTCTCTCTTCAGTCCT 37780 35 100.0 37 ................................... TTACCGCTTGGTTTACGACTAACTTAACAGTCATTAT 37708 35 100.0 37 ................................... TTTGCATACTCAAACATTCCGCTGTCGATGTTGTTTT 37636 35 97.1 32 ..........T........................ TAATACCCCACGCCATCAAAAACAGACTTTAG 37569 35 100.0 34 ................................... ATTACCTGCTAACTTAAAAAATAATTTGTTATTC 37500 35 97.1 0 ..........G........................ | CG [37466] ========== ====== ====== ====== =================================== ===================================== ================== 6 35 99.0 35 CTTTCAGTGCACTTGGCCGTTTAGGCCGTTGAAAC # Left flank : GGGTGCTATTTTGCCAACTGTTTGGCGGTTCACTACACTTGCCCGCCCCGTTAACCTATATCGTGCATGACTTTTCAACACTGTTGACCTTGCAGCAGATTGACCCGCTCACCCCACGCCAACAGTTATTGCCCGCTCACTCAATGATGGCAGATGCCGGTCAACCCCATAATGCTTTGTATGATGCCCAGCTGCTAAAAGCCTGCTTTACCCATTGGCAAACACACGGCCGCTTTGTCTCACAATGCACAGTGAAAAAACCGTAATCCGCCAGACACCCGTTGCAACGTTTCCACAAGCTGAAATACTATGAGTCAGCGACTGAATCGGTTCTTTAACAGCACGGGCATTTTTATCCTTATTAACAACCCATTAGTGATAGAATCATGAAAGGTATCAACAATGCGTGTTATGCAAAAAGGTCGTTGCTTGTGGATAACGTTAGGGCGGAGGAAACAGGGGGCTATCTTATTGAAGTTCATACTGAAATAATACCACCA # Right flank : GCACGGGAACAATCACACATTCACCCGCCAATGACATACGGTGTGTCGATAAGATAGAGACAAAAAAAGGCCACCTTGCAAGGTGGCCTCAATCCATATCAATAATGCTATTCAGTTATACGTGATCTTTTTCTTTTCGAGGTGGTGTTTCTTCTCTATGTGGAGACTCAGAAGGAAAGTCTTCTGCTTTCATTTTATTCTTCACAATTAAGGAAGGGTCACTGTTCGATGCTTCCCCATTTGTCACTGTCTTTTTGATTTTATTTAACACATGATTTTCCTTAATTGTTTCATGCATAGATTCAATTCTATTCATAACTAAAGCAATAATCTCATCTTTCATACCAAGGTAATTCATTACTTTAATTGTCAAAACCAAAAACACCACTGACAAAGCAATATTAACCCCAATATGCAGACCATAGAATGTGGCTTTTAATGCCTCTGCAAACAACATGGCTATTGCTAATATTGCAGCTGCTGTTGATAACCTTGACATT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAGTGCACTTGGCCGTTTAGGCCGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 38805-39474 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDOV01000030.1 Photobacterium aphoticum strain DSM 25995 contig0030, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ====================================== ================== 38805 35 100.0 34 ................................... ACTATCAAATTTTAGTGGGCACCCAATACAGAAT 38874 35 100.0 33 ................................... CAAAGAGTATGTTGATGATACTTTCAACAAACT 38942 35 100.0 36 ................................... AGTTTCGTGAGAAAATGCATGCTAACAAACAGCGAA 39013 35 100.0 35 ................................... ACGGTAAATTTTTACTAAAAATGCGGATAACCGCA 39083 35 100.0 35 ................................... ACAATAAGACAGCTATCGACCATGCAAAATTCTAC 39153 35 100.0 37 ................................... AAGTCCTGTTCAACACCCATGTGTCACATGGTGTTAA 39225 35 100.0 38 ................................... CACATTACTGATGTGGATGCGTCTGTTCATTCAGACTT 39298 35 100.0 36 ................................... AATTAAGGATGTTTGATTATGAAATTCATGAATGTG 39369 35 100.0 36 ................................... TCCGTGCGGATAAGAAATCCGATCAAGTCATAAGGA 39440 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ====================================== ================== 10 35 100.0 36 GTTTCAACGGCCTAAACGGCCAAGCGCACTGAAAG # Left flank : GGCGGGCAAGTGTAGTGAACCGCCAAACAGTTGGCAAAATAGCACCCAATCGTATGCCGGGCAATCAGCCCACATCTCTATATCATCATACACACTTAACCACTCTGTCAGCGCTGCCGCAATGTGCGGTTCGGTGTCAAATATCCATGTACTTTGTTGTGCGGTGCTGAGCGCATCATGGCGAAAGGTTGCCTGATTGTCTGGTTGGGTCAGCCATTGCATATGGGGCAGCACATGTTGCTGCAACCACGGGTCTAGGGTATAGGTTTTTGCCTCCATGCACTCGGCATAAAATGTGCGTCCGTTTTCATCCACCAAGGCCAGGCTCAGTAAACGTGCCGATTGGGTCAGTGCGGTAAATTCAGAATCAAAAAACACTCTCACCGTCTTATCCTTTTATGTGCCGTTATTTTCTCATTGTAAAGCGGGGAATGCCCCATGCCAACGGCCAAGCGCACTGAAAGGATGATCTCTGAATGTAAGTTCGCAGTTCCTTCTTT # Right flank : GGGTAGCATTATTTCAGTACGCACATCAATAAGATAGCACCCTGTTTTCTCCGCCCTAAAGTTATCCACAAGCACCGGCCTTTTTGCATAACACACATTGTTGATACCTTTTATGATTATATCACTAATGGGTTGTTAATAAGGATAAAAATGCCCGTGCTGTTAAAGAACCGATTCAGTCGCTAACTCATAGTATTTCAGCTTGTGGAAAAGTTGCAATAGGCTCTCCCCATATATCAAACGACTTTTTTCGGGCATTGTGAGGCAGCCAGTAAAAGCGCAAACTGTCTGTATCATCCACGTATTTTTTGCAGCGTTTTTTCAGCGTGGTTAACGCTTTATTATCCCTCAGGGTGATCTCAAACACCGAGTATTGTACACGCTCACCATACCCCAGCAGTAACCGGCTGAGGCGACGGCGTTTCTTGTCATCTTCTATATCAAAGCAAGCAAGGTAAACGTACATGGTTCAGCTCCTTTTGTGTCAGTGATGCGGTGTG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACGGCCTAAACGGCCAAGCGCACTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA //