Array 1 1027411-1028414 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025094.1 Salmonella enterica subsp. enterica serovar Virchow strain FORC_080 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1027411 29 100.0 32 ............................. TTTTGTTTAATTCTAAAACGGGACAAATGGAA 1027472 29 100.0 32 ............................. GGAACAACCATTCCCTCAATGAACGGGTTATT 1027533 29 100.0 32 ............................. CGGACAGGCCTGCCAGTCGGGCAATATCCGTC 1027594 29 100.0 32 ............................. TTGACGGCCTGGCAGCGCGTGACGTTATTAGC 1027655 29 100.0 32 ............................. CCAGGCTGGTACTGTGCGCCATAAAGACGCCT 1027716 29 100.0 32 ............................. CCGACCACAATCAGGGAACTGATCCAGCGTGG 1027777 29 100.0 32 ............................. TTCAGATTGTCGCTTTTTGTTGCTGCCATTGC 1027838 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 1027899 29 100.0 32 ............................. CCTTATCAACTAATTCGTTCCTTGACACTCGT 1027960 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 1028021 29 100.0 32 ............................. CAGGTCACTAAAATTTGTAGGGTTATCCACAG 1028082 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 1028143 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 1028204 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 1028265 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 1028326 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 1028387 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1044684-1047519 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025094.1 Salmonella enterica subsp. enterica serovar Virchow strain FORC_080 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1044684 29 100.0 32 ............................. GCGGCTCTATTGTGCACGTGCTGGCGCTTACG 1044745 29 100.0 32 ............................. CACATGCACCTTTTGAGCCAGTAATTGACAGG 1044806 29 100.0 32 ............................. CTTGGAAAAGACAACAATATATTGGTAAATCA 1044867 29 100.0 32 ............................. GTCACGTACTAGTGACGACATAGACAGACTGG 1044928 29 100.0 32 ............................. CGGCGGGACCCCGCGATTTTCTCCCTGACGAA 1044989 29 100.0 32 ............................. CTATCCGGGCGTTTACCGTGTGAGCGCCTCCA 1045050 29 100.0 32 ............................. GGGGCTTCTCCGCCATCGTAGCGGATTTCAGA 1045111 29 100.0 32 ............................. GTCCGGGCGACGTGGCGGCCGTGGTAGTACAT 1045172 29 100.0 32 ............................. GCTGGACACCCCGCCGCATAAACGCGAGTCCA 1045233 29 100.0 32 ............................. CTCTGACTCGTCATAATCACCCCATCTGGACG 1045294 29 100.0 32 ............................. GCATCAACAAAAGTGATCGGCTATACAGTCAG 1045355 29 100.0 32 ............................. AAACTTCCGTGGGAGGAAACGGACGGGCAAGT 1045416 29 100.0 32 ............................. TGGATTGCGGAAGATGATGGGGTGCTTAACCC 1045477 29 100.0 32 ............................. GGGCTAAATTTGATAAGTGGGAACCGTCAAGG 1045538 29 100.0 32 ............................. CTAAATACGGGCCATAGCGGCAGTATTACCAC 1045599 29 100.0 32 ............................. GTATTAATTGACGTGGTGACGATGCGTCGTAA 1045660 29 100.0 32 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTG 1045721 29 100.0 32 ............................. GCCTCTGTAATTGATTCCAGCGTTATTTGCTC 1045782 29 100.0 32 ............................. TCTAATGCTTCAATATCAATCATTATGTTATT 1045843 29 100.0 32 ............................. ATGATCGCGCCCTCATCTCCCCAGATTTTTGA 1045904 29 100.0 32 ............................. GCAAAACGTCTGCAATGCCTTTTTTAACAAGA 1045965 29 100.0 32 ............................. CCTTGTGTTGCTCTTTGAATTGCTGCGCCATA 1046026 29 100.0 32 ............................. GCGTCTCCCCTGTAATTGTGACGCTGTCATCC 1046087 29 100.0 32 ............................. GGCGTAATACATCATCACGCACAATGACCATC 1046148 29 100.0 32 ............................. TTGATATCCGCCTCAACTACTACGAGGGTGAA 1046209 29 100.0 32 ............................. TTTCGTCGGAGCTGGTGGACGTACTGGAACAG 1046270 29 100.0 32 ............................. AGACACAATACAGCGTATCCACCCCTGAAGAG 1046331 29 100.0 32 ............................. CTGAGGTTGAGCCGCAAAAGATTGTGACTGAT 1046392 29 100.0 32 ............................. TAGGCTTCTTTCAGCCTGGCGGCTCGTTTACC 1046453 29 100.0 32 ............................. AATGTTGCACTCACCTCTCTCGCCACAAAACC 1046514 29 100.0 32 ............................. TAACTCACGTTTGCGAGCTTCCATCTGTGCCG 1046575 29 96.6 32 .............T............... CCGCGCTGGGCCAGCCGCATAACGCTGGAAAT 1046636 29 96.6 32 .............T............... CCAATACGTATACTGACAACAGTATTACTGAC 1046697 29 96.6 32 .............T............... TACGCCCCGAACGCGGGGCTGGCTGCTGACCA 1046758 29 96.6 32 .............T............... GCGCTATTCCTACCCCCACACCCCGATCCCCC 1046819 29 96.6 32 .............T............... CCGCGCCTTATCGTCGTACATACCCGGCGGTA 1046880 29 96.6 32 .............T............... AAAATTGTATCATGTTTGGATTGCTGACAGAT 1046941 29 96.6 32 .............T............... GCTGAGTAGGAACACATATTAACCGGCCCTTC 1047002 29 96.6 32 .............T............... CGAAAAAACGGGCGCTGCGGGTCATTTTCGAA 1047063 29 100.0 32 ............................. ATCCGCGCCTTTCCACGCTTAAACGTTACGTA 1047124 29 100.0 32 ............................. TTGTACTGATCATCTTCCAGCCCGGCAAACGC 1047185 29 100.0 32 ............................. CGTTCTTCCAGCACATCCTGCGGCTGCACGAC 1047246 29 100.0 32 ............................. TCACGCGGGCCCCCTTATTGGGTCGGGCAGGT 1047307 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 1047368 29 100.0 32 ............................. CGCTGATATTGTTCGCGCAGATCGTCGTACTG 1047429 29 93.1 32 .........................GT.. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 1047490 29 93.1 0 A...........T................ | A [1047516] ========== ====== ====== ====== ============================= ================================ ================== 47 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCATTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAATGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACTGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //