Array 1 617-39 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAARU010000496.1 Escherichia coli strain 3467-2 Ec-3467-2_contig496, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 616 29 100.0 32 ............................. ACATTGACTGCCCGTGGCGTCCCCGCGACCTT 555 29 100.0 32 ............................. AGTTTGTCGAACACGGAGCGGAGCATACCCGC 494 29 100.0 32 ............................. TGCACGCCCTGCCGGAATCTCCCCTCGCTCTC 433 29 100.0 32 ............................. AGTAAGCCGGTTGATTATCGCCAGGGATATTA 372 29 100.0 32 ............................. AGCTTTATTGTTTTCAGGGAAAATAACGCGGC 311 29 100.0 32 ............................. CGCCAGTCTGAGGTTTTCCGGTCATACATCGT 250 29 100.0 32 ............................. CGCCAGTCTGAGGTTTTCCGGTCATACATCGT 189 29 100.0 32 ............................. ACCGTTGCTACACATATGATCAGGCATGTGCC 128 29 100.0 32 ............................. GACGATGAGACGCCCTGGTGTGCCGCGTTCGT 67 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 10 29 100.0 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTATAGAATTACTTTAAATATTTGGCTTTTCAATCAATGAATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGTTTCTGTTAAGTTGGTAGATTGTGACTGACTTAAAAAATCAATAATTAATAATAGGTTATGTTTAG # Right flank : GCGTTTAGCTCCGCAATGTTGGATATCACTGATGAGTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [35.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 56674-56036 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAARU010000191.1 Escherichia coli strain 3467-2 Ec-3467-2_contig191, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 56673 29 100.0 32 ............................. CCGAATAGACAATGACCGCAAAGTGTCTATCG 56612 29 100.0 32 ............................. CTTTCCTACTGAATCCGCGTCGGTTGCCTCTG 56551 29 100.0 32 ............................. AGCCAGACACATTGCTTTATCGCGCCACGCTG 56490 29 100.0 32 ............................. GCGAGTAAGAGTACTGAGTATTTTAATCTCAT 56429 29 100.0 32 ............................. GCCATAGACTTTATTAACTTCATTGGGGGTTA 56368 29 100.0 32 ............................. CGTATCACAACCGGCCTCAGTACGTATCAGAA 56307 29 100.0 32 ............................. AGGGGCAGGGAGTGACGCTGGAGCAGGCGATC 56246 29 96.6 32 ..........................C.. CAGGGAAACCGTTCGTACTTATCGACCTCAAC 56185 29 96.6 32 ..........................C.. AAGGGGACGGCTACGGGACGCCGCCTATTGAC 56124 29 93.1 32 ............T.............C.. GACGCACTGGATGCGATGATGGACATCACTTG 56063 28 72.4 0 .A.........C..T....T-.G..C..C | ========== ====== ====== ====== ============================= ================================ ================== 11 29 96.2 32 GTGTTCCCCGCGCCAGCGGGGATAAATCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGCGATAGCGGTCACCGGGGACGCGGCGGATGAGTATGGTCGTCGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGATCGCGATCTGGCTCCTGGAAGTGCGTGCCGGTGTTTATGTCGGAGATACGTCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTGGTAATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGGTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCTGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : CAGCTCTCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACTGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCATCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAATTAAGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTTTCGGTGTCACTCATCCGCT # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAATCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //