Array 1 68290-69252 **** Predicted by CRISPRDetect 2.4 *** >NZ_AEXP01000002.1 Lactobacillus iners SPIN 1401G contig00127, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================================= ================== 68290 29 100.0 33 ............................. CAGTCACTTTACAAAATGACAACTCATATTATA 68352 29 100.0 32 ............................. GGATTGGGGAAAAGCGACTTTAGAGGCTATGA 68413 29 100.0 32 ............................. CAACGCTTACTTCTCGAATTCAATTAACTGTC 68474 29 100.0 32 ............................. GTAATGCTACGAACAATATCAATTCTTTTTAA 68535 29 96.6 32 ............................C CACGTTTACAATTTCTGGTATTATCTGACACA 68596 29 100.0 32 ............................. CGAGGACATTGTGGACATGGTTCGCTATAGCA 68657 29 96.6 31 ............................C ACGGGCTAGAAAATCTAAAAAAGCATGTTTA 68717 29 100.0 32 ............................. GCAACAAACTCGCAAGCTTTACGCAATAATCA 68778 29 100.0 32 ............................. GCAGGAATAAAGTATTTTATGTTTACGATTGA 68839 29 96.6 32 ............................C TGATTAGACTTGCAGTTTTTTGTGCATCATAT 68900 29 100.0 32 ............................. TATGCGGTTGCGGTTTAGGATGTTTTATTTCA 68961 29 100.0 32 ............................. GCGAGCTGGAAGATAAAATCAATGAATTTTTT 69022 29 100.0 33 ............................. CAACGCTTACTTCAAAGTAATAAAGTCACTTTA 69084 29 82.8 109 .....................AC...TTA AAAACACTTCCAAATTTTTATTTACAAAATTTAGGCAATATATCATAATATGTTTAACTTAGGAGTAAGCATGTTATTTTTAGTTTTGGCTTGCTTTTTTCTTAATATT T [69104] 69223 29 69.0 0 ...C..T...T.......T..A.A..AAA | T [69240] ========== ====== ====== ====== ============================= ============================================================================================================= ================== 15 29 96.1 38 GTATTTCCCGCACATGCGGGGGTGATCCT # Left flank : GTGCTATAAAAATTGCCAAAAATATTGAGGAATATTCATGTATTGTTAAACAGAATATTACACTACCTAATGCAATTAAGATTTTAACTGGAATAAGCGATGCAGAACTAAAAACTGGTAAAGATGAGTCTGTAGCAATTAAAGAGTTATGTACGTTTATTGGAGATAAGGCATTAGTTGGCTATAATGTTAATTTTGATATCAGGTTCATCAATGAAGCATTAAAACGTAACGGACAATCTCAATTAACGAACAAAGTATATGATGTCATGAAATATGTAAAACGTGATAAGATGTTTTTAAAGAACTACAAGTTGGATACAGTATTAAGTGAATATGGAATAAATATTAAAGTACCACATAGAGCGATTGAAGATGTAAAAATAATACGACTTCTTATTAGCAAATTAGATGGATTAACTAATAAATTGAAAATTCAAAAGTGAATGAAAAAATGGTATCCTTAAATTGCAGGTAGCGTCATAGATGGATCTTTTAGT # Right flank : AGTTATTTTTTATAATTAAAAGAAGAAAGGTAACATATATAATGGGAAGAGAGCTTATGGGGTTGGCTAGTTGTGATGATGATCGCAAAGCAATTATCAATTTTACTATAGTAGCTGCCAAATATTTTAACGATCAAGTTACAGTTGAAAAAATTAATGATAGTTTGAAGGAATATGGTCAAGCCCCTTTGACAGAAGAAGAGAAAAAATTTTATGGGGTAAAATAATTTTTGCCAAGTACTCTCTATTTTTATCGAGTATTGCTATCATGAAAAATAAAAGCACTAATTTTAATATGTATGCGTGTTATAGAATACATATCTAAATTAGTGCTATTTTTTGTGATTTGAAATTTTTTATTTAGAATTTTTAGTTAATTTATTTTTGATAGATAATATGATGATAGGCAAAATTGAAATAGCAATGATAGCAATGATCAGCAAGGAAAAATGATGCTGTACAGCAGGAATATTACCGAATAAAAAGCCACAGATTGAAAA # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.46, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTTCCCGCACATGCGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACATGCGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //