Array 1 140048-140520 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048279.1 Staphylococcus sp. MI 10-1553 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 140048 37 97.3 34 ....................................A TAAAATAACTCCGTCTGCTTCATTAAAATTGTAC 140119 37 100.0 33 ..................................... AATTATTTTTTTGAATTCTTTATATTTTTTAGA 140189 37 100.0 36 ..................................... CAAATTTCACGCTACTAGTTCGCCATATGGTGTTTT 140262 37 100.0 38 ..................................... AAACGGTCGTGATTTGATTTCTTTGATGTATTTTTCAT 140337 37 100.0 35 ..................................... TGTAAACTTCGAGCATTTGTTTATCTGTACTTAAC 140409 37 100.0 39 ..................................... CGATAGCAAAAGTATTATAAAGTGCATTACGATGATTTG 140485 36 91.9 0 ................................-..GG | ========== ====== ====== ====== ===================================== ======================================= ================== 7 37 98.5 36 AATCAGATAGAACCCCGTACAAAAGGGGACGAGAACT # Left flank : TATTGAAAGTAATGTAAAAATAGTAGATTACAAATTAAAAAGCACTAAGTTTTACTTGGAAAAGGTGAAAATACCTTCTTTTACTGGTGAACTTTCGCTAAAAGTTAAAGGTCCTTTGCCGTTTTTACAGTTAATATATTTTCTTTTGGAATTTGGCGAGCTTTCAGGTGTAGGGATTAAAACTAGTTTAGGTATGGGAAAATATAGTATTATTGAGAGGGAAAATAAAAAGTAAATATAATGAGATTTATGTATATATAAATGGATAACTTTTTAGTTATAGTAATAAGACCAGCGATATAGAAAATTACAAATTTACAGTAATTATTCAAAACGGAAAAATTGTACTCAATTAGTGTATAATTGATATTGAAAGTGTTGTTAATAGTTTTTGTCCGAAAAGTGGGCATCATGTAAGTATACACGTGATGTTGTGTCCACTTTTCGGACAGTAAATACACATTATAAGCCACTACAATAAAGTATTTGTGCAGATGACT # Right flank : GTTGATATTACGATTTTTGAAACAATTTGTCCTAGGGTAAATAGGTTTAAAGGGGGATAAAAGTCAAGTGAAGTGGGGGAGTATTATCTCATAGAGTGTAAAAATAAGGGGCTGGGACAGACCTTTAGATCCCTTTAAGAAAAAGTCGTTATAATTCATTTTTTTGAATTTAACAGTTTTTTTCTTATTAGCGAACGAAAACTAGAACTTATTTTGGCTAGCTTTCGTATATTTACTGCCATGAGTGCGATGCCAAGTTCACACTCAACCTTTGATTTTGTGCGAACCGATAATCTTTGGAAACCCAAATTAGCCTTCAGATTTCCAAAAGTTGATTCAACATCTATCTTTCTCTTTTGATAAATGCGTTTCGTCTTTGGATCTGAAAGCTTCTTATTTGTTGTAAATGGCGGTTATAAAATGTAGGAAAAAGGCGGAATGAAAATGCTGTTTTTCCTACATTTTTAATTTTCTAGAATATATAATCATGTCTTAACTCA # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCAGATAGAACCCCGTACAAAAGGGGACGAGAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 2092421-2091792 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048279.1 Staphylococcus sp. MI 10-1553 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 2092420 36 100.0 30 .................................... TGAAGAAATAGCACACTATAAGTACACTTA 2092354 36 100.0 29 .................................... ATAAAGCATAAAGAAGTTGCAGAGGCTAT 2092289 36 100.0 29 .................................... AAGCCGGCATCTGTGTCGTGGTTACGTTG 2092224 36 100.0 30 .................................... CGAATCTGTGCTTTCTGCTTTTGGAGCATT 2092158 36 100.0 30 .................................... TGAACGAACGCTATCGAAGTATTGATAAGA 2092092 36 100.0 30 .................................... CGAATCTGTGCTTTCTGCTTTTGGAGCATT 2092026 36 100.0 31 .................................... TGGCTAGCTCATCTTTAATATCTTCAACCGT 2091959 36 100.0 29 .................................... TATTTATGCGATTTTAGGTATTAGAATGT 2091894 36 100.0 30 .................................... AGGGGGCTTCTCGCTATAAATAGATTTTCT 2091828 36 100.0 0 .................................... | T [2091805] ========== ====== ====== ====== ==================================== =============================== ================== 10 36 100.0 30 GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC # Left flank : TATTATTTCCGGAGTCTCACCTCGGTATTCGCGATATAGAAGTATTTATGCAACTTTTAAAGAAGTATCATTTCACAACGATTGTTTTCACCAATCATCCTTCTATCATCATTAACGAAGAAAACATATTTCTTTGTAAAAGTAATAAAGAGTGTCATGACATTGAAAAAATAAAAGAAGAATTATCGTTATTTATTCCAGATGAAATGGTGAGTTATCAATTGACTCACATGATCGCATACCACGAATTTGTAGGTGAAAACCTTTCTGAGTTTAAACGGTATTTTAAGTTTATAAATCATTACAATTAAGTTATACTAAACTTAATATCATATGATAGAGAAAAGTTAATACAACGATGAACGATTAAGTAATGACTATGTGACTTTATTCGTGATGATGTGGGTTAACTTTATCAATCGAGTTTAATGTTTGACTTCTTTTGATAGTGCTAAGCCTCAATTTTGAAAAAGTATTGAGTTGGTGCCTTTAGATTTGAG # Right flank : GATAAAGCGCAATTTCAACCTAGTTATCTGTTTAACACTTATATTGATTTAAAATGATGGTATACCATGCTGAATTTTTTAATCAAATCAATACAAACCTATGCGAGCCACACCTACACCCCTCACTATGCCTTCAACTCAAACTGAAGGGATGTGAGGATTTTTTCTTACTCATACAAAATGCCACCCAACGCCTCCTGTTTCTCCTCCATGTTATAATAACCACAAATGTTCATAAAAACACAAAGAAAGTAGGGGAAATCTATGGAAGCAATTATTGCACGACAACCGTTCCAATTAGCAGAAGGTCAAAAGTTTGAAAAAGTATCGCGTGAGCTCCCAACACCAGAGGCGCATGATATTTTAGTCAAAGTGCATGCGACTGGGGTGAATCCGGTTGATACGAAAATGCGTCAGGCACTGTTAAATGCTGATGCGCGTGTACTGGGTTTTGATGCGGCAGGTGTGGTTGAAGTGGTCGGTGATGCGGTTACGGATTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: R [matched GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //