Array 1 225095-226158 **** Predicted by CRISPRDetect 2.4 *** >NZ_JREA01000014.1 Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000194 CFSAN000194_contig0013, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 225095 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 225156 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 225217 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 225278 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 225339 29 100.0 32 ............................. CAGGCTGGTGCCATAGTTTTGAGTTTCTACCG 225400 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 225461 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 225522 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 225583 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 225644 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 225705 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 225766 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 225827 29 100.0 32 ............................. GGCGCCCGCGTTTCTCGGCTCGGCGCAATATC 225888 29 100.0 32 ............................. GTAGTGCAACGCCGGTGATTTTACCAGTATCA 225949 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 226010 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 226071 28 96.6 32 ............-................ GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 226131 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 18 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 242281-243653 **** Predicted by CRISPRDetect 2.4 *** >NZ_JREA01000014.1 Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000194 CFSAN000194_contig0013, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 242281 29 100.0 32 ............................. GGCCAGTTCAACAAACACCACGACGCGGGAAT 242342 29 100.0 32 ............................. GGTGACGGCTTTGTCCGACCGCATCCGGGCCA 242403 29 100.0 32 ............................. ACGAGGGACGGCTGGCGCTGGAGAGATTTTCA 242464 29 100.0 32 ............................. ACCCGCTCCGCGCAGCTCGCAGCGTAATTCGA 242525 29 100.0 32 ............................. ACACATATACTCTCCCCGTTTGCATCATCAGG 242586 29 100.0 32 ............................. ATCGCTAAATCTAAAATGCCCTCGTACAGTGA 242647 29 100.0 32 ............................. CGCAATAAACGGCATCAGCTATAGCTTGATAG 242708 29 100.0 32 ............................. AAACTGCGTTTGAGTTCCAGCCGCTTTTTCCT 242769 29 100.0 32 ............................. GCCGACGACAAAATCACGGTCACAACGGGTAT 242830 29 100.0 32 ............................. GATTCGACTTTATAGGGATTGATTAGAGGAGA 242891 29 100.0 32 ............................. TTATCTATGCCATAGTGACCCCACGTTACATA 242952 29 100.0 32 ............................. TATAATTGGCGTCCATATATCTGGATATTTAC 243013 29 100.0 32 ............................. ATTGTTTCCCGCTTGCGCTTGCATCGCCGGAT 243074 29 100.0 32 ............................. CTTACTATCAGCTCGCGTGCTGTTTGCAGGCC 243135 29 100.0 32 ............................. GATGCCAAACTGGTCAAGCTGGCGATTATCAA 243196 29 100.0 32 ............................. ACCATTACTGACGTGATGGCGGCGCAAGGGTT 243257 29 100.0 32 ............................. GGAAATAAACTCCTTGAGCAGCGGCAAGCAAC 243318 29 100.0 33 ............................. TGTGAACGTCGGATAAATACCGATTCCGCCTGC 243380 29 100.0 32 ............................. AGTTTCTTGTGACGCTTCTATTCAGGACAAAA 243441 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 243502 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 243563 29 89.7 32 ............T....C....G...... AACTGGTACACCCGCCTGACGTTTGTTCAGCT 243624 29 96.6 0 ...............A............. | A [243651] ========== ====== ====== ====== ============================= ================================= ================== 23 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //