Array 1 9042-6452 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOBH01000032.1 Streptomyces violens strain NRRL ISP-5597 contig32.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 9041 29 100.0 32 ............................. ATCTCCGAGACGACCAGGGAGGGGGTCACCAC 8980 29 96.6 32 ............................C GTACCGGATGGGCTCGAACATGGTGACGCGGG 8919 29 100.0 32 ............................. CAGCAGGCGGCCGAGGAGGCCCAGGAGAAGGC 8858 29 100.0 32 ............................. CCGAGCTCGTGGATGACGACGAGCTGGCCGAG 8797 29 100.0 32 ............................. CTGTCGATGACGACGGCCTGGTGGTCGTGGTG 8736 29 100.0 32 ............................. ATCATGGACCTTCGCTGGTTCATGTCCCGGGA 8675 29 100.0 32 ............................. CCCTGGACGTTCCCCTCGACAAGCTCCAGCAA 8614 29 100.0 32 ............................. TTGCTGCTGAGCGCTGTCTCGCTCCTTGATGG 8553 29 100.0 32 ............................. CCCGGCGACACCGCCCACCCCGGCCTGCTGGA 8492 29 100.0 32 ............................. CCGGTACTGCGAGTGCGAGCCGGTCCGTGAGC 8431 29 100.0 32 ............................. TACGTCGAGGCAGTAGCGTTCGTGCTGTCGCG 8370 29 100.0 33 ............................. TCCCAGGACGTCACCCCCACCGGCCGGGTCTGC 8308 29 100.0 32 ............................. CAGCCGGCGCCCCGCCCCACCAACCAGCGGCT 8247 29 100.0 32 ............................. CTACTCGGTGAGCGGGTCCACCCGAAGACGGG 8186 29 100.0 32 ............................. GGAGCCGTAGGTGTCGAAGAAGGCCGTCGTGT 8125 29 100.0 32 ............................. GACTTGGAGGCCGGCCGCGTCGGCGGCGGGCC 8064 29 100.0 32 ............................. CCGGAGACGTGCCGGCCGATCTGGACGTACCC 8003 29 100.0 32 ............................. ACGTCCGGCGGTGGTGGCCAGGGGAGCGGCAG 7942 29 100.0 32 ............................. CCAAGACCGGGCTCGAGCAGGCCAAGGCCGAC 7881 29 100.0 32 ............................. ACGTGGACCATCCACAGGCCCGCCTGGACGGC 7820 29 100.0 32 ............................. ACGGGGCTGGGCGTGGTGGCGCGCGGCCAGGC 7759 29 100.0 32 ............................. GCGGTCTCGGTGAACAGCAGGCCGGCGAAGAC 7698 29 100.0 32 ............................. ACGCCGGAGCTGGTGTACGGGCCGATGCAGCC 7637 29 100.0 32 ............................. GCGGAGGTGGCCAAGGCGAAGGCGAACTACCC 7576 29 100.0 32 ............................. GCCCGTGCGCGGGCTCGTGAATCAGGGGTCCG 7515 29 100.0 32 ............................. GCCCAGCGCACGCCGTCGGTGTCGGTGCGGAA 7454 29 100.0 32 ............................. CAGTACAACGATCCCCGCATCTACCCCAATTG 7393 29 100.0 32 ............................. GGCATGAAGGCGTTGAGGATGCCGGTGAAGCC 7332 29 100.0 32 ............................. CTGCTGGCGCTCCAGCTCGTCCTGCATGCGCT 7271 29 100.0 32 ............................. TGGTCCGGGAGCCAGGGCTCGTGATTGTCGGT 7210 29 96.6 32 ............T................ GGCGTGTACTGCATCTCTGCCCCGCTCGACCT 7149 29 96.6 32 .......................A..... ATCAGCACGACGAACGTGGTGAGCGGCCAGGG 7088 29 93.1 33 ........T.............C...... GACCAGTAACGGCAGGCTCCGGGCAACGGGGAG 7026 28 93.1 31 ...-......T.................. TGCCTGGACCACCTGCACAACGGGTGCCCGA 6967 29 100.0 32 ............................. TACGGGGACCGCGGATTCCGCGGTGTGTACTT 6906 29 93.1 32 ...T...T..................... CAGCACGGCATCGGCACCTTCGACGCCGAGGC 6845 29 93.1 32 ...T.........A............... ACCCGTTCGAGTTCGACGGCCGGTTGCACGCC 6784 29 93.1 32 ...T...T..................... CTGTACGAGCGCGCCTGTCTCGGACGGTTGGA 6723 29 89.7 32 ...T........A.............T.. GCGGAGGCCGCCAGGCTGGAAGGCGAGCGACG 6662 29 82.8 32 A..T......T..........A..C.... CGGTCCATGCACGAGCTGACCGGCGTCCCCGA 6601 29 82.8 32 .C........T..............A.TT TCCCAGACGTACCTGCCCCTGAACCGGCTGCG 6540 29 89.7 32 ........T.....G........T..... GTGACTCGCACAATGGCGCCTGCGTCACCATC 6479 28 79.3 0 ....-..GA.T...........C....A. | ========== ====== ====== ====== ============================= ================================= ================== 43 29 97.2 32 GTCCTCTCCGCGCGAGCGGAGGTGAGCCG # Left flank : GCCACGCATCGTCACCGACATCCAAGACCTCCTCGACCCCGGCACCGAACGCGACATCCCCGACCCCGAAGAACAACTCGTCGACCTCTGGGACCCGATCACCGGAGTCGTACCCGGCGGCACCAACCACGGGGCCGACAGATGACCCTCAGGATGAAGGAGCACGCCACATGGCCTCGATGATCGTGCTCTCCGCCAGCGCCGTCCCTCCCCATCTCCGCGGTGCCCTGTCACGGTGGCTTCTGGAAATCACTCCCGAGCTGTATGTGGGAACCGTCTCCGCCCGCGTACGCGACGAGCTCTGGTCCGCGGTTGCGGCCTGCGCGGGAGACGGCACAGCCGTTCTGGCCTACCCCAGCGACAACGAGCAGGGTTTCGAATTGCGCACCGCGGGCACAGCTCGGCGTCTCCCAGTGGACTTCGACGGTCTGACCCTGATCGCCTTCCGACAGGAAGGCAAAGAACTCGCAAATCGCTTCTAGAAGAGCAGGCCAGGAAGG # Right flank : TAGACATCGTGGGATTGGGCGATTGAGTGCAACCTTTGGTGCCGGCGGTCTCCGCAGCGACTCGCCCATGCCTAAACAGTGCCCACCAGGAACACGGCTACGGGATAACCTTCAGAGGGCTGGCCGTACAGTGCAGCGCTGTCGACGGAAGTCGTCCAAGCCGCGCGGTGGGCTCTGGCGAAAGCGGCTTGGTGCCCCATGATTTCTCGGGTGCCTTCATGGCTGCCCATGGGTGCCTCAGCAGGCGCCGTCCAGCATATTGCGGTCCGCGTCAACCGTATCCTCGTCCACAATTAAGTCGTCGCCGACTGGACGTCTCGCAAGCGGTGACTCAAGCGGCTTCTCGGCAATTGCTTGTGATCCAAGCGCGGACCTCCGCAGGGGAAAATCGCAGCTGTTGCCCTATGCGGAAGCTAGGGATGCGCTCCTTGAGGTGGTTGTCGTATACCCAGGAAGCCGGCTTCCCGAGGAAGGCGGCCAGGGTCGGGACGTCCCAGAGC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCTCCGCGCGAGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCTCCGCGCGAGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.10,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [34-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 18742-21522 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOBH01000032.1 Streptomyces violens strain NRRL ISP-5597 contig32.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================================================== ================== 18742 29 96.6 32 ..................A.......... GGCCTGGTCGCCGCACCCGAGCGTCTTCTGGA 18803 29 93.1 32 ...........T..C.............. GTGTAGCGGCCGACCCACTCCCCCGGCAGACG 18864 29 93.1 32 .C......G.................... AAGATCACCATCTTCGAGTCGGACGGGGACGT 18925 29 96.6 32 .C........................... ATCGCGCAGTTCCTCATCGGTGGGCACCGTGG 18986 29 93.1 32 .....G.................A..... TGGTTCCGGCACAGGAGGTTGTTGCACGGCGT 19047 29 96.6 32 .............A............... GTCCCTGGCTGGGGCGACGCGATCAAGGTCGC 19108 29 96.6 32 ..G.......................... TCGCCGCGGTCGTCCCAGGCGTGCGTGCCCTC 19169 29 96.6 32 ..G.......................... CGGTGCGTGTGAGACGTGCCGGCCGTCGCGTT 19230 29 96.6 32 ..G.......................... CAGATCGAGGCCGAGGCGTACGCACTCTGACC 19291 29 93.1 32 ..G................G......... TCCCCTGGTGGGGTCGCTGCGCCAGAGGGCGC 19352 29 96.6 32 ..G.......................... GCGAACCGGTCGGGGGCAGAGGCGCCCACGCT 19413 29 93.1 32 ..G..................A....... CGGGAGTCGAGCAGGGCGCCGGTGTCGCCCAT 19474 29 89.7 32 ..G................G....G.... ACGGCGGTAGCGTCGGTGGCCGTCTGGTGGCC 19535 29 93.1 32 ..G...............A.......... ACCGGCGACCTGGACGGAGCGGCCGAGGCGAC 19596 29 96.6 32 ..G.......................... TCCAGCGGCACGTCCCGCGGGCCGTGCAGGCG 19657 29 93.1 32 ..G...............T.......... TCGAGACGTGCGCGAGCGGCCGTACGTGCCGC 19718 29 100.0 32 ............................. TTCGCTGCCGGGCACGGATTCGCGGCATGGTT 19779 29 100.0 32 ............................. GCCGTGTCCGGCAGCCCGGAGTCCGCGGACGT 19840 29 96.6 32 ......................G...... CTGCACCTGCCGGGGCCGGTCACCAAACTGCA 19901 29 100.0 32 ............................. CGCCCGGGGCCGGAGAGCCATTGGGCTGAGGG 19962 29 96.6 32 ............................A GTACGCCGTCCGCCTCCTCGATGCCCGCGAGT 20023 29 93.1 32 .....................A......A GCGGTGGGGGCATGAGGCACTTCACGCGCAGG 20084 29 100.0 32 ............................. TGGTACGTGTGGGACACCACCGTGGACCGGGA 20145 29 100.0 32 ............................. CCCGCCCCGACGGTGGGTCAGGACGGGCTTTG 20206 29 100.0 32 ............................. TCGTCGTCCTTGCCGGTGCCCTCCACGACTGT 20267 29 93.1 32 ..................TT......... TTGGGCCGCGCATGGCCCCGATATGCCACCGC 20328 29 89.7 32 .........A...........AG...... GGTTCCGGGACGTCCTGGACGATCGCCTTGAT 20389 29 100.0 32 ............................. GCCGTACGCGACGGCCGCCAGGTCCTCCTCCT 20450 29 100.0 32 ............................. ACCAGCGTGTGCCGCCCCGGCATGGCGCAGAT 20511 29 93.1 32 ......CG..................... TCGTCGCCGGGCCGGTAGTCGTAGACGTATCG 20572 29 89.7 32 ...T.....A......T............ GCCGGCCATCGCGAGTCGCCGCGCTCGCCCCG 20633 29 86.2 32 .C.T.G......T................ ACCAGTCCCAGTTGGACTCTTTCGGTGGTGCT 20694 29 93.1 32 ..........TA................. AAGCGTTCCGCCTGGTCGGGGCCCGACTCCAG 20755 28 82.8 30 T........A..........-.C..A... GCGATGACGGTGTCGCCAGGGGCTGACCAG 20813 29 79.3 32 C.G.C......AT........T....... TTCGCCGCCCGTCTTCGTGGCCTGCACGTCTA 20874 29 75.9 33 C.......T....AG.......CA....C GCGGAGATGGACGAGCTGATACCCAGCCAGAAG 20936 28 72.4 126 C...A..T....A.-..A...C....T.. AGGTCGCACGATGACCGGCCCGCACCACAGTTCCGCTCGACGACGAAGATCAGCCGTAGTCGAAGGTGTTCCAACCGATCGTCTGGTCTCTCCGCGTGAAGCCGACTGCGTCCTGACGGCTTACGG 21090 29 89.7 32 .C.T..............A.......... ACGGACGGCGCTGTCCGTACATTGGCGGTACG 21151 29 93.1 26 .........A.................T. CAGCTCGTACAGGCGGTCTTCACCGT 21206 29 72.4 31 .GA.GTG.T....A.............G. TATCGACGACCCGAGTCGACCACGTAGTTAC 21266 29 82.8 20 ..AG.......CT.............T.. TGCCCAACCATGCCCCTTTC Deletion [21315] 21315 29 69.0 91 AA.....T.A....G..A.G.A.....T. CGGGGCCCGCTGTTGGTCCTGTGGAGCGCGCGACCCTCTTCTCGCGAGCAGACGATCCGGAAGCACGGAAGTCAGCGGTGGCAGCGAAGCG 21435 29 79.3 30 ..T.............T..C..C..AT.. GGGCTCTCCTTGGCAGACTGAAGGGGAAGT 21494 29 82.8 0 ..T.....TA........C.T........ | ========== ====== ====== ====== ============================= ============================================================================================================================== ================== 44 29 91.5 35 GTCCTCTCCGCGCGAGCGGAGGTGAGCCG # Left flank : GGTCGCTCTTTACGGCGGCGAACGCCTCTGGCACCTGAGCCTGGAACGGCGGCGTGATCTTCCCCAGATCGTGGAGCCCGGCCCAGAACGACAGCACGGCCCGCGCCTCGCCCACTGTTAACCCGAGAGCCTGAGCCAGGCGGTCCCGCACCCGGTCACCGATCAACGCGTCCCACAGGGCGCCGAACACCGCTGCGGTGTCCAGCAGATGACAGATCACCGGATACGGCCGGGGGAGCCCCCGCTCCTTACCCCAGAAACGAGCATCGAGAGGGACTTCTCCCGGCAGCACGTCTTCGCGTCGCATCATGCGCCATGGATAACAGTCCCCACTGACAACGCCGTCCCACCTGCGCAAACGAAGCCCCTCCCCGATGAGCCCCGGGACGTAGACTGCGCTCCATACCTGTGCTGATGCTGGAGAACGACCACGGCCTCTCGCACCCCGATGCACGCATTAAAGAAACGGCAAAGCCCAGTTAGAACCGCAGGTCGGGAAG # Right flank : GCACTCTTAGGCCACTGAGCGTCCCGGAGTGAACCTCTCGCTCCGTTACGGAATAACTGAACGGTGACCTGCATTACTGCCGCTCAGTGATGGTGCAGGAGTGGGGAGGAGCATGAAGGACCTGAAGGCCTTCCGAGTCAGAGGCGGCCGGGCCACGGAGATACCGGGTGCGTCGGTTGCGGTGGAGCGGGAGCTGCAGTCGCTGGTCGAGGCGAATATGAAGGCGCTGCTGGGCATCCGCTTCCTGGCGACCGAGTACCCGACCGGTCAACACCGAGGCCGGATCGACTCGCTTGGGCTGGATGAGAACTGCAATCCGGTGATCGTGGAGTACAAGCGCTCGCGGGACCAGAATGTGATCAACCAGGCGCTGTCGTATCTGTACTGGCTGCAGGGCCATACGCACGAGTTCGAGAACCTGGTCAAGGAGAAGCTGGGCGCCGAGACGGCGGGGTCAGTGGACTGGAGCAACCCGCGCCTGATGTGCATAGCGGGAGCGT # Questionable array : NO Score: 4.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.57, 5:0, 6:0.25, 7:-0.30, 8:1, 9:0.23, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCTCCGCGCGAGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCTCCGCGCGAGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [20-83] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //