Array 1 5320-5591 **** Predicted by CRISPRDetect 2.4 *** >NZ_VINT01000007.1 Salmonella enterica subsp. enterica serovar Uganda strain HIY0233 NODE_7_length_297836_cov_39.906026, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5320 29 100.0 32 ............................. GTGGATATGCTGGCCGAGAAGGTTGGAACAGA 5381 29 100.0 32 ............................. CCATCCTGGCGGAACTGTATGCAGAAACAGGC 5442 29 100.0 32 ............................. GACTACCCGGCATTTGTGGACGCATATCGGCA 5503 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 5564 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 5 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCTTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 15818-17984 **** Predicted by CRISPRDetect 2.4 *** >NZ_VINT01000007.1 Salmonella enterica subsp. enterica serovar Uganda strain HIY0233 NODE_7_length_297836_cov_39.906026, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 15818 29 100.0 32 ............................. TGAACTATATCAATATAAAACTCACTAAAATA 15879 29 100.0 32 ............................. CCACACGTTGAGCGTAAACCTCTGCCGTTTCC 15940 29 100.0 32 ............................. ACTCCGCCACCCGCGTGGCGGGTAATAAAAAA 16001 29 100.0 32 ............................. TCAAACATCAGCGATTCATCGACAGCGTATGA 16062 29 100.0 32 ............................. TATTCACTAAGCATTTCATTTTTTATAATGAT 16123 29 100.0 32 ............................. CGACCCCCCATTTTTCCGAATCGTAAACGAAC 16184 29 100.0 32 ............................. GGAGGTGATAACCGCCTCGCTGAACGCTACGC 16245 29 100.0 33 ............................. AACATCCAACGGATTCGCTTTACTCAACCATGC 16307 29 100.0 32 ............................. TCGTTTCGTGTTGCTTCATCTGGCAGGTCCAA 16368 29 100.0 32 ............................. TCAGTTACCGATGTTAAAGCAAAATCCGCTAA 16429 29 100.0 32 ............................. CGTAAGAGCCAGGCGATGCCAGGCACTAACTC 16490 29 100.0 32 ............................. GCATGACAGGGCGTATTCATCCCACGTGCGTT 16551 29 100.0 32 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCG 16612 29 100.0 32 ............................. ACAAAAGAAATTGTGACACCTAACACGGCCGA 16673 29 96.6 32 ............................T GTAGTTATACTAATAATGTAGTTGAGTAAGAG 16734 29 100.0 32 ............................. GAACTGATGGGCGCCATTACCGGCGAATTAGC 16795 29 100.0 32 ............................. GACTGGTATATCAACAATCATGAGCAATTCTG 16856 29 100.0 33 ............................. GAATCCCAATCTATTACCGGCACGTAGCCGGGG 16918 29 100.0 32 ............................. GCAATATCAACCGGGCGACCTGTCGCCTGCTC 16979 29 100.0 32 ............................. CTCTACGCTCGTTGCCCACGGAAAAGTCTCGT 17040 29 100.0 32 ............................. TAACCGGCACCTTTACCCTTGCGGAGGCTGAG 17101 29 100.0 32 ............................. ACGATTTCGAACGCGTCAGCGGTCCTGACTAC 17162 29 100.0 32 ............................. CATGGCTGAGGGGATGGCGCTTAAAGACTGGC 17223 29 100.0 32 ............................. CGGGCGTTAACGTCCGAAGAGGTTCGCGAAAC 17284 29 100.0 32 ............................. TGGCACGCCCCCGGCTTCTCTATCCGCGCTTT 17345 29 100.0 32 ............................. GTCACGTTCTGGAGTGTTCACAGCGTGAATTG 17406 29 100.0 32 ............................. CGGTTCCGTCATTGCAGATCCCCCACTTCATC 17467 29 100.0 32 ............................. TAACGCTTCAATGTCGCAAGCTTCAGTTCGTT 17528 29 100.0 32 ............................. GATTTACTAAGGTCAACGAGGGATTGAATTGG 17589 29 100.0 32 ............................. GCGAGGATCTTGTGTTGCAGGTTGGTCTCGCC 17650 29 100.0 32 ............................. CAGCGCCGTCCCGCTGCGCAGATGTTCGGTGA 17711 29 100.0 32 ............................. CAGGTCTATTGGACGATCGATAAAATCATTCA 17772 29 96.6 32 .............C............... ATAATAAGCTCAATAATGTAGATATTGAATCA 17833 29 96.6 32 .............C............... ACGACGGCACAAAAGAAATTTCCACCGTGGAT 17894 29 96.6 32 .............C............... TCGCACAACGCCTGGATATCCGCCCATCGGCC 17955 29 93.1 0 .............C.A............. | A [17982] ========== ====== ====== ====== ============================= ================================= ================== 36 29 99.4 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : CGCCAGTGCTGCGCATTCTTGCTCCGGAGTGGGATGACGCGCCGCGAGAGAACTGGTTATCCAGCGCCATGCGTAACAGCGCCTATGTCTATCCCGATCATGGGCGCATGTGGCTGACGCAGCGCATATTACGTGAGCAGGGGACGATTCGGATGCCGCAATCTGCCCGCTTGTTGATTGAGTCGGTCTACGGTGAGGATGTCAACATGCCGGTTGGATTTGCAAAAACCGAGCAATTGCAGGAAGGCAAATTTTATTGCGACCGGGCATTTGCCGGCCAGATGCTGCTTAACTTTGCGCCGGGCTACTGTGCTGAAATTAGCGATTCTTTACCGGAGAAAATGTCAACGCGGCTGGCGGAAGAGTCTGTCACGCTGTGGCTGGCGAAAATCGTGGATAGCGTCGTAACCCCTTATGCCAGCGGTGAACACGCCTGGGAGATGAGCGTGCTGCGAGTACGTCAGAGCTGGTGGAATAAACATAAAGACGAGTTTGAAAAA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //