Array 1 1399286-1398226 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP012326.1 Bifidobacterium dentium JCM 1195 = DSM 20436 strain JCM 1195 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 1399285 36 100.0 28 .................................... GAAATACGTCTACGAGCGGTTCCGTTTC 1399221 36 100.0 28 .................................... GCATCGAAAGCCTCTGCGAAGACATTCG 1399157 36 100.0 28 .................................... GCGCCCCGACCATCCCGACACGAAAGCC 1399093 36 100.0 28 .................................... CTTATCGCCGGATTGTTGCGCGGCGAGA 1399029 36 100.0 28 .................................... AGTCCTTGCCATTATGGTCGGCTGGCAC 1398965 36 100.0 28 .................................... GCTTCGCGACTGTGGAGCGGGTTGCGGA 1398901 36 100.0 28 .................................... CGTGTCGGACGTGGACGGCGTGCTCTAC 1398837 36 100.0 28 .................................... CTTGTCGGCGTGTTCGCCACGGCTCCGA 1398773 36 100.0 28 .................................... TTGCGAGCAGTGCAATGCACGTCGTCTC 1398709 36 100.0 28 .................................... TTTCCCGGCATCTTTCCTCTCGTGGTTG 1398645 36 100.0 28 .................................... GGCGACGTACACTTCCTTGGCGCACATG 1398581 36 100.0 28 .................................... TGTTTTTCCACATCACGCCTTTGCGGCA 1398517 36 100.0 28 .................................... ACGAATTCCTTGAAAACCTGATCCGCGC 1398453 36 100.0 28 .................................... CGCAGGAACTGTATTCGCTCGTATACCA 1398389 36 100.0 28 .................................... AATGGTACGTCCGTTAATGTCTTCCGAT 1398325 36 100.0 28 .................................... TCAACCCGGATAATGAGTCGTTGCCGTT 1398261 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================ ================== 17 36 100.0 28 CAAGTTTATCAAGAAGGGTAGAAGCTAATTCCCAGT # Left flank : AGTTCGACTCATCTGGCCTGACGATACCAAGTTCAATAAGCGATTTCGCACAACAATTTGGCTTGTATTGCGAGAAGAAGATCGATGCATTGGAAGTGCCAGAATATCGAGGCCCTTATGAAAAAGGATGAGGACAGTGATGGCATGTGGTGTCTGGTGATGTTCGATCTGCCGGTGAAAACGAGACGGCAACGACGAGAGGCGACAGAGTTCAGAAACATGCTTTTAGGCATGGGCTACAGCATGGTGCAGTATTCCGTATACTCAAGATATACGCCGACCCAATCAGGCAATAGATCGACGGTGATCGCAATAAAAGAGAATCTTCCTCCTGATGGTATTGTTCGAATTCTCCATGTCAGCGATCATCAATGGTCGACCGCATTGCGTTTTTCCAGTTCTAAACAGGTGGAGACTAATGAAACGCCGGACTATTTCACACTTTTTTGAACAGAAGAACCTAATTGAAAGGCGGAGAATGGCCCTTCTTGACAAACATA # Right flank : ACATCGACGAGTTGGGGACCGAGCTCTCCAAGTTTATCCACTATCCCAAGGAGATACGAGCTAATGGAACGCACAGTCACATTTGAAGATGAGGAGTCCGTCAGGGCCTTTTTATTGGTGTCATCATCGGTTACGTCATCATGTCTGTGATTCTGCATCCATTGCATGCGCTGTACTGGATTTCGAGGATCGCAGGCGTCTGCTGCATGTTTTACGGTGTCGGGTCATCCGTGTATCCGGCAAAGGGATTCGATTTCCTCATTCTCGGCGTGGCATCATTCTACATTCCAAAAGGCTGGATTCTCCATGGCATCCCCGTTCGAAGATGCCATGCGGCTTCTCGCCTTTTAATCGGCATTCAGGAAAGATGCGTATCTTCCCAGCGCGGACAGGAGATGGTCCTTCCTCGTTCGTTTCGGATCGATGACGGGCATTCCCTCTCGAATCCGGCTGTAAATGGGTGAGAATGCGTCGTATGTGTCATATGAGAACACGGTCTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGTTTATCAAGAAGGGTAGAAGCTAATTCCCAGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 2 1836771-1831394 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP012326.1 Bifidobacterium dentium JCM 1195 = DSM 20436 strain JCM 1195 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 1836770 33 100.0 33 ................................. AAGTCGTTGTTCATGTGGACACGCCAATATCCG 1836704 33 100.0 35 ................................. GCAGAAGGTCACGATGGATGATGCAACGTTTTACA 1836636 33 100.0 33 ................................. CTTAACCGTACTCCGGCCGCGGCTGGCGGACAG 1836570 33 100.0 33 ................................. GAGAAAAGGACTAAACAATGGCTACCGTATACA 1836504 33 100.0 33 ................................. ATGACACTTCCACCGCCCGTACCATGACGGGAA 1836438 33 100.0 34 ................................. CTGCAAATGACGAACGTGCTGTCGGATGAAGCGT 1836371 33 100.0 33 ................................. GTCCTCGACCGCGACCATGCCCGAATCGTTTGG 1836305 33 100.0 34 ................................. ATTTATTTGCGCCGCACCGACGTGGAACAGCACC 1836238 33 100.0 35 ................................. AAGGATTGAGGTGAGCTCGATGAGGCAAATGCCGC 1836170 33 100.0 33 ................................. TCGGGGAAGCGGTACGAGCCACGGTGCGCGTGG 1836104 33 100.0 33 ................................. CATTCGATGCCGATAGGGTGCCCTGAGTCTGCC 1836038 33 100.0 34 ................................. ATAAAGTCCCTGTAAGTGATGGAGGACACGTTAG 1835971 33 100.0 33 ................................. TCGGAGGAGCTGCTCGTAGTAGTCTTCGAATCC 1835905 33 100.0 34 ................................. TCTCTGCAGCACGCGCATATTCGTGGATCAGCCG 1835838 33 100.0 35 ................................. AACGACGGCAGCTCGCACGTGGAATGGATCACCGA 1835770 33 100.0 34 ................................. TTGTCCGGCGACATCGGCGGCGGCATCAGCGCCA 1835703 33 100.0 34 ................................. ATCCAGACATGCGATTATGTCAATGCCCACACCA 1835636 33 100.0 34 ................................. CGCTTTGAATGGCAGGTTCGGGATGCCGAGTCCG 1835569 33 100.0 34 ................................. CAAGTCATCCAGCGTTTTGCCAATACGCTCGAAT 1835502 33 100.0 34 ................................. TACAAGCATAGGGGGTCTATCACCCCTAATCCGT 1835435 33 100.0 32 ................................. CAGCTCGGCGACGCGGACGGCCAGATGCTCAT 1835370 33 100.0 34 ................................. CCCGATTGGGAGATGAGGATCCGTGGCCGCGTCA 1835303 33 100.0 34 ................................. TCCGGCCCCCAGCCGAGCTCTTCCCACGCCATTT 1835236 33 100.0 34 ................................. TCACCCCGGTAGGCCCAGTCGATGGGCAGTTCCC 1835169 33 97.0 35 .............G................... ACTGCGACGGCTTGCGCTTGCATGCACAGTAACCC 1835101 33 100.0 34 ................................. GATTGCCTTGTGTTGGCATTCGTCGTTGGATGAT 1835034 33 100.0 34 ................................. CATTAAGAGTGAAGTTGCCAAGACGTATGCGACC 1834967 33 100.0 34 ................................. GACATGCTGGGCCATGATATAACCGCCTTAAAAA 1834900 33 100.0 34 ................................. ACATCCACGAGCAACTGGCGCGTCGTATATAAAA 1834833 33 100.0 35 ................................. TGGTCGGCGGTCATCATCAGTCTTATCGGCGGTGG 1834765 33 100.0 33 ................................. GGCGTGTACGCCGTCAGATAGGCCGTCGCACCC 1834699 33 100.0 33 ................................. ACAAACCCATTGCCGAAACTGCTCAACACGACA 1834633 33 100.0 35 ................................. ATGATTTGGAGCCTAAAAAATCAAAAGTATTGTAC 1834565 33 100.0 33 ................................. GATGTGAAATTCGACGTGGACCGGACCAGCTTC 1834499 33 100.0 33 ................................. GCAACCTTACGCGCCGCCATCATGTGCAGTCGA 1834433 33 100.0 34 ................................. GCCTCACGCGAACGAATAGCATCGGCGGAGGCCG 1834366 33 100.0 33 ................................. ACCAAATACGTGTTTAAGGTGCAAGATGATTGC 1834300 33 100.0 34 ................................. CCGTCACCGATGCGGAAGTGGAAGCCTCCGCCAA 1834233 33 100.0 34 ................................. TTCTTTCTTATTACTACTACTCCTACTACTACTA 1834166 33 100.0 34 ................................. ACCATGCGTTTGCAGTCCTGCTTGCGCTTGTAGA 1834099 33 100.0 33 ................................. AAATGCCGGTATCTGCCCGGGATATGGAAGTTG 1834033 33 100.0 34 ................................. CTGGTGCCGTCAATCGGATTGACCGGCGAATTGG 1833966 33 100.0 35 ................................. ACCTTATCGTAGGCTACGGGGTCGTTGATCAGCCA 1833898 33 100.0 33 ................................. CTGCTGGCCATATGCCTGGAATCGCGTGGGTTG 1833832 33 100.0 34 ................................. CTCGATTTCGGTTTGCATGTGGGTCAGGATCCGG 1833765 33 100.0 34 ................................. CTCAACAGGCTGACCATGGCGTCGGTGGTCGCGT 1833698 33 100.0 33 ................................. TCATACCGTGATACGCTTACCGTACTCGGCTAC 1833632 33 100.0 33 ................................. GTTGAGCGTCCGTAACGCCATGGTCGCCTCCCC 1833566 33 100.0 36 ................................. ACTGCTTGCGGTGGCTGTCGAGTCTTGCGTGGTGGC 1833497 33 100.0 34 ................................. GCCTTGACCTCACGCGACATGAAATCGGCGTAGG 1833430 33 100.0 33 ................................. ACCAACGAACAGGTGAGCGCGACCCTGTTCGCC 1833364 33 100.0 34 ................................. CAGGATGGATGTCAATTCGATGAGGCAGATGCCG 1833297 33 100.0 34 ................................. CAACCATTTGCGGAACGTTGGTCATATTATCCCC 1833230 33 100.0 34 ................................. TTATGAAAGGTGTGAACATGAGCAGACGGAACAA 1833163 33 100.0 34 ................................. GGGTGCGGCGAATGCGATCGGTGCGGCCGCCACC 1833096 33 100.0 34 ................................. CTATCCGCAAATCGGCTCGAAAGAGTGCGTACCC 1833029 33 100.0 33 ................................. GCGCATGGTGCGGCCCAGGTAAAAGACGAACAT 1832963 33 100.0 34 ................................. GTGGACGGCTCGGGCGCTGATGTCCACAAGCTGG 1832896 33 100.0 33 ................................. TGGTTGGTCTTGCGTCTGCGTCGAGTCCACGTC 1832830 33 100.0 33 ................................. CTCCGGACAGGTCGAACTACGGAGATACATTTC 1832764 33 100.0 35 ................................. AATAACTGATGCCGGACAGTGGCTCGTTGTCGCCG 1832696 33 100.0 35 ................................. ATTGGCCAGCACGAACCTTTCGAACCAGCAGACCA 1832628 33 100.0 35 ................................. AAGCCAAAATAGTCGGCAAACCACCATACGGTTAT 1832560 33 100.0 34 ................................. TCCGTCGAGAGTGTTCCGTGATCAGGTCGGCGTG 1832493 33 100.0 34 ................................. ATGGCAAAGTCCCTGCATGCGCGTCTCGTGGCCT 1832426 33 100.0 33 ................................. ACGTAATCGCACGTCTGGACGAAATAATACCAA 1832360 33 100.0 33 ................................. GCTTTCGCGCCGACGGTCAAGATCACCCGCAAA 1832294 33 100.0 33 ................................. TACACGGCAAGCGTCGGCATCCGCGGCGTATCA 1832228 33 100.0 33 ................................. ACGTGATGACGCAGGTCGCAGTCGATGACATGC 1832162 33 100.0 33 ................................. GACAAGGACGGGTATTCGCCGCCATCAGGCGGC 1832096 33 100.0 34 ................................. CTCACCGGCGTCAACGGCACGGGGAGCAAGACAT 1832029 33 100.0 33 ................................. CTGTCCGGCGACATCGGCGGAGGCATCAGCGCC 1831963 33 100.0 33 ................................. CGATTTGGAACGTGAGATAGCGGAGAACATCAC 1831897 33 100.0 35 ................................. TCATGTTCCATTGCCCTGAGGTTGAGGATAGCCCA 1831829 33 100.0 35 ................................. ATGAGCCGTGAAGTCAAGGCGAAAGTGCATGGAGG 1831761 33 90.9 35 ............................TG..A TATGCACGCGCACACCGACATCCGCAGGGAGCAAT 1831693 33 100.0 33 ................................. ACCGACGTGGCATGCGGCAACGACTACACTCTT 1831627 33 97.0 34 ......T.......................... TTCCGATCGAAGAGTCCGCTGTCGTTCTCGGCGA 1831560 33 100.0 35 ................................. GAGGACAGCCTGGAGGGCTGCTACGCGCTCATGCA 1831492 33 100.0 34 ................................. ACGCCGAGCTCCCGGTCCCCCGTCGGCCCTGGTG 1831425 32 84.8 0 ....................T.A.-...A...C | ========== ====== ====== ====== ================================= ==================================== ================== 81 33 99.6 34 GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT # Left flank : CTGCGGGGAAGAGACGGTTGCGTAACGTTGCGAAGACATGTATGAAATATGGGCAACGGGTGCAGAATAGCGTATTCGAGTGCTCGGTCACTTCATCGGATTATCTAACTTTAGTAAATGAAGTGATGAAAATCATGGATCAAGAAAAGGATAGCCTGCGCTTATATAAATTAGGGACAAAATATTCTGAGAAGATTGAACATTATGGTGTACAGCGGCATCTTCCTGTAGATGATGTGATGATGATTTAGACGCCGAGGCCTGTCGTTGTGCGAAGTGGAAGCTCTCATCGAATAAGGCAAGCTTCGCACCTGGATGGAACTTGGAATCGAAAAGTAAGTCGATTTTCCTTGGCTGTTTGATAATTTCAGAGAGAAGAATCGTTATTATTTTTTGGTAGAGTGATTAGAATAACGGGTTTTGACTTCAAACCCTGCTACTCTTGAACTTGTACGAAGGATAGATGTTCCACAATGTGAAACATGCTGTCCATCTGTGCA # Right flank : ATGATGGGAGCGGCCATGGGATTGCGTGAACGGCGTGAGCGTTGCGGGTTGACGTTGCTCCAGTTGGATGCGTTGACCGGTATCGCCTACACGCGGTTGAGCACGTTGGAGTGCAATGCGTCCGAGGCTCGCAACATGTATTTGGGTACGGCTCGGCGGATTGCCGACGCGTTGCATTGCAACGTGTTGGACTTGTATCCGGATGAGGATGCGTGGCGTGGCGGCGTGTCAGCCGGCGTGACCGGGTTGAGGAGGATTCGTAGGGAACGGCATTTGACGCAGCGGATGCTGTCAGCCTTGACGGGTATCCCCCAGCCTAATATTTCTTGGTTCGAGACCGGGTATCGTCCTGTGTCTCAAATGTATTTGGATACTGCGCGACGCCTGTCGGAGGCGTTGCAATGTGACCCTGTTGATTTTCTTATTGATTGAAAGGATATTGTGATGAAGGCTGAGGTTGTTATTGTTTCACGGTTGGAGCGCCATGGCGGGACGATGCT # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.10,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //