Array 1 948023-949515 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP047115.1 Salmonella enterica subsp. enterica strain SCSM4.1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 948023 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 948084 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 948145 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 948206 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 948267 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 948328 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 948389 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 948450 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 948511 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 948572 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 948633 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 948694 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 948755 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 948816 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 948877 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 948938 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 949000 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 949061 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 949122 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 949183 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 949244 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 949305 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 949366 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 949427 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 949488 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 965647-967611 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP047115.1 Salmonella enterica subsp. enterica strain SCSM4.1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 965647 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 965708 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 965769 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 965830 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 965891 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 965952 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 966013 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 966075 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 966136 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 966197 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 966258 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 966319 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 966380 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 966441 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 966502 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 966563 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 966624 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 966685 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 966746 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 966807 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 966868 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 966930 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 967033 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 967094 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 967155 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 967216 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 967277 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 967338 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 967399 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 967460 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 967521 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 967582 29 96.6 0 A............................ | A [967608] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //