Array 1 1045734-1047713 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP036165.1 Salmonella enterica subsp. enterica serovar Albany strain sg_wt5 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1045734 29 100.0 32 ............................. GATATGGGGCTTGATCTTGATTTATTTAATAC 1045795 29 100.0 32 ............................. ACAAAAAAGACGAAACCAAAATCGACGCCGCG 1045856 29 100.0 32 ............................. CCGTCATGGCGGATATTCGTCTGATTGGCGAC 1045917 29 100.0 32 ............................. GGGATTGCGGGAATTAGTATTAAATCCGGCGT 1045978 29 100.0 32 ............................. GAATTGCGGGAATTAATATTAAATCTGGCGTC 1046039 29 100.0 32 ............................. ATAATCAGGTCGTTAATATTTTTGGTCGCCGC 1046100 29 100.0 32 ............................. CCCACGCGGCACAGCTGGCAGAGGACGAAATG 1046161 29 100.0 32 ............................. CGCTGGTGTACGACATCGCCGACATGATCAAA 1046222 29 100.0 32 ............................. CGCCTCGCAAAACTGGTCGGGGTTTTTCCCCA 1046283 29 100.0 32 ............................. TTGCGTCAGGTCGTCGTTTTTTGAGAACGCCA 1046344 29 100.0 32 ............................. CTAAATAAAACCTGTAATTGCTCCCAATCGTA 1046405 29 100.0 32 ............................. AGGGGCAGCTCCTGGTCGATGAGGTTCTTGAG 1046466 29 100.0 32 ............................. CCGTCGGCCTGACAGCCACAGCAGTCAATACA 1046527 29 96.6 32 ............................A TGCTGGTCACGCCCGGTTTAGCGGGTAAATTC 1046588 29 100.0 32 ............................. TCACGGGGTCCGACGCGGATGTAATGAGTTAT 1046649 29 100.0 32 ............................. GCGTTGGCGTCGCCCAACACCATCGCCGGGGC 1046710 29 100.0 32 ............................. TTACTGGAACTGTCACTATACGTGGAACGTCG 1046771 29 100.0 32 ............................. ACAACCGTCGTTTTCTCCACGACGTCGAGAAG 1046832 29 100.0 32 ............................. ATCTCCGGCACGTGCGATAACGGGTCTGATTA 1046893 29 100.0 32 ............................. CGACCCAGCGTTACGCGGTAATATTTCGCACC 1046954 29 100.0 32 ............................. GACGTTGATTTACACGGCAAAGATACGGAATC 1047015 29 100.0 32 ............................. GTACTGGCCTATTCCACATACAGTGGCACGCG 1047076 29 100.0 32 ............................. TAGCTTAATCACGGTGCGTCCCTCCTCCGTTC 1047137 29 96.6 32 ...C......................... ACCTGATTGAGGTAATCATGAAAAAAATATTA 1047198 29 100.0 32 ............................. GCTGGAGCGCAACTGCCAGTGACTACAGAAGC 1047259 29 96.6 32 ............T................ AGCACGCCACAGCGCGTAACTGTCGCAATAGA 1047320 29 100.0 32 ............................. CGTCTTATCAGGATACCTGCAAACAGATGTTG 1047381 29 100.0 32 ............................. ACCCCCCATTTACTGTTATTGTAGGGATAGCC 1047442 29 100.0 32 ............................. CGAGCGCGGAATGATTTTTAACGCTGAGATGG 1047503 29 100.0 32 ............................. GCTGGAATGGTACGGCTTACCAACTTCCCTGA 1047564 29 100.0 32 ............................. TGTTTGCCATTCTCTCGCGTGCTGAGGGAGAC 1047625 29 100.0 32 ............................. ATTTGCGTCAGACTACCGACAGGGGCTGGTAT 1047686 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGATGATAAAAAATAGTTTATAAACAACAATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1064271-1067169 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP036165.1 Salmonella enterica subsp. enterica serovar Albany strain sg_wt5 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1064271 29 100.0 32 ............................. CGAACACTGGCTTAAGTGCCATTGCTGGAAGT 1064332 29 100.0 32 ............................. CGTCATCATACCAACTGCTGGTCGATACGATT 1064393 29 100.0 32 ............................. ATAACAGCGGCCACAATATAAACAATGGTTAA 1064454 29 100.0 32 ............................. CATTCTGACTAACGCCACCACAATTGCCGCTA 1064515 29 100.0 32 ............................. ATGTCAGCGCAGGAGATGGCGGCGACTGCTGG 1064576 29 100.0 32 ............................. CGCCGCCCCCATCACAGCACCCCGGCCAGCTT 1064637 29 100.0 32 ............................. GTCTTGAGCAGTGGGCGCAAGAGTCTGGTTAT 1064698 29 100.0 32 ............................. GAATCGCGGGAATTAATATTAAATCTGGCGTC 1064759 29 100.0 32 ............................. CGGGCATTTGCCCGCTTTTCATTACAGTGATT 1064820 29 100.0 32 ............................. TTCTGGCAATGGTCTTATTTTTTGAGGTTTAG 1064881 29 100.0 32 ............................. GTCACGTGCGGTTATCCTGCAATTTCTGACGA 1064942 29 100.0 32 ............................. GTTTACAGCCTGAGCAATGCCGGAATGAATGA 1065003 29 100.0 32 ............................. TATTTCAATATTCATTCATTGCAGGCGTAGGA 1065064 29 100.0 32 ............................. ACGCGAGCGCCGGTAGTCAGCACATCATTAAA 1065125 29 100.0 32 ............................. CATAACCATAACCAAATTGGGTTAATGGCGCC 1065186 29 100.0 32 ............................. CCAGCCTCTTCAACGAGTTCGAGAAACGCGGT 1065247 29 100.0 32 ............................. TCTGGTCGTCCGAGGCTGAGGCCGAGTGGCTG 1065308 29 100.0 32 ............................. CGCACCTGCCGGGACATGACCCTGCCGGAGCT 1065369 29 100.0 32 ............................. GCGTTTAAACGCTTTTTTGATATCGGCTTCAG 1065430 29 100.0 32 ............................. TTAGAGTTGAAATTGATGGCATTGAACTTGGC 1065491 29 100.0 32 ............................. TACCAAAGATACCGCCGCGCTGCTTTCTGGTA 1065552 29 100.0 32 ............................. GCATTGCCTGGCTGAGTCCGTCGCTAACTGCG 1065613 29 100.0 32 ............................. TAGCTTCTTTGTTCGTGCGGGGCGGATTATGC 1065674 29 100.0 32 ............................. CATAATTTACGCGGCCCTTTTTTGGTCACCCA 1065735 29 100.0 32 ............................. CGAATAAACAGGCCTGTAACGCGCTCCAGCGT 1065796 29 100.0 32 ............................. GCTCCGCCTTGAAAATAACATCTGACATTGTG 1065857 29 100.0 32 ............................. TGCCGGGGTTCTGCAGTCTCTATTTTCCTCGC 1065918 29 100.0 32 ............................. GAGCTGATAGAGGCCAACCCGGACGCAAAAAT 1065979 29 100.0 32 ............................. TGCACATACATCCTCACTTACTGGGTCTGACA 1066040 29 100.0 32 ............................. AGCTGTTCGGCGTGGCGGCGTAGCGCCTCGGG 1066101 29 100.0 32 ............................. CTGCTGATGTAATGGCCGACGCAGATGCTGTG 1066162 29 100.0 32 ............................. AAAGTTGACACAATAGCGAAATCAATTACTGA 1066223 29 100.0 33 ............................. TTGTTGCAGGCGGGAGAACGCAGCGCGTACCCC 1066285 29 100.0 32 ............................. GCGACCTGCTCGACAGCATTCAGTTTGTTGTT 1066346 29 100.0 32 ............................. TGATCCAGCCACTTAAACAAAATGATCCACAT 1066407 29 100.0 32 ............................. GGCCACACCGACAACCGCAACGGATACAAACA 1066468 29 100.0 32 ............................. CAGCCGGAACGACAGCAGCGACAGCGACGTGG 1066529 29 100.0 32 ............................. ATATTATAAAAAAAATAATAACCTCTCAGAAA 1066590 29 100.0 32 ............................. GTTTGGTTCATCCTGAACGGCGTTCGTGGGGA 1066651 29 100.0 32 ............................. CGCCCGCATGATGGCGCGGTTACTTAATGTCA 1066712 29 100.0 33 ............................. CGGTATGCTATTGACAGGAGTGAGATTTTAGAT 1066774 29 100.0 32 ............................. AATCTTCAGAGGACTCAGATCCTGATTACGTT 1066835 29 96.6 32 ............T................ TTGATTACAGTAAAATTTACGTTTATTCAGTC 1066896 29 100.0 32 ............................. AAATCTCCACCGTGGATATTTCGGTTATTGGT 1066957 29 100.0 32 ............................. ATGTGCGCATTATTGCTAACCATAGAGACTCA 1067018 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 1067079 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 1067140 29 100.0 0 ............................. | A [1067167] ========== ====== ====== ====== ============================= ================================= ================== 48 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGCACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //